data_060
# 
_chem_comp.id                                    060 
_chem_comp.name                                  S-methyl-D-cysteine 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C4 H9 N O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-01-25 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        135.185 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     060 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZKY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
060 CS   C   C 0 1 N N N N N N 4.664 39.201 1.573 3.291  0.769  0.613  C   060 1  
060 N    N   N 0 1 N N N Y Y N 7.749 38.174 4.998 -0.582 -1.771 -0.137 N   060 2  
060 S    S   S 0 1 N N N N N N 6.196 39.413 2.550 2.092  -0.182 -0.361 S   060 3  
060 C1   C1  C 0 1 N N N N N N 6.704 37.703 2.841 0.497  0.386  0.289  C1  060 4  
060 CA   C2  C 0 1 N N S Y N N 6.764 37.326 4.335 -0.637 -0.335 -0.443 C2  060 5  
060 OXT  O4  O 0 1 N Y N Y N Y 5.285 38.253 6.016 -2.412 1.380  -0.503 O4  060 6  
060 O    O5  O 0 1 N N N Y N Y 4.449 36.693 4.673 -2.619 -0.368 0.832  O5  060 7  
060 C    C13 C 0 1 N N N Y N Y 5.443 37.444 5.104 -1.962 0.224  0.009  C13 060 8  
060 HCS1 H   H 0 1 N N N N N N 4.246 40.188 1.326 3.164  0.540  1.671  H   060 9  
060 HCS2 HA  H 0 1 N N N N N N 4.894 38.657 0.645 4.302  0.505  0.303  HA  060 10 
060 HB   HB  H 0 1 N N N N N N 3.931 38.629 2.161 3.128  1.835  0.450  HB  060 11 
060 H    HN  H 0 1 N N N Y Y N 7.795 37.936 5.968 0.269  -2.183 -0.488 HN  060 12 
060 H1   H1  H 0 1 N N N N N N 5.985 37.036 2.342 0.439  0.166  1.355  H1  060 13 
060 H1A  H1A H 0 1 N N N N N N 7.703 37.557 2.405 0.403  1.461  0.134  H1A 060 14 
060 HA   H2  H 0 1 N N N Y N N 7.098 36.280 4.401 -0.528 -0.188 -1.517 H2  060 15 
060 HXT  HO4 H 0 1 N Y N Y N Y 4.383 38.223 6.313 -3.267 1.699  -0.183 HO4 060 16 
060 H2   H3  H 0 1 N Y N Y Y N 8.646 38.034 4.578 -0.681 -1.934 0.854  H3  060 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
060 CS  S    SING N N 1  
060 CS  HCS1 SING N N 2  
060 CS  HCS2 SING N N 3  
060 CS  HB   SING N N 4  
060 CA  N    SING N N 5  
060 N   H    SING N N 6  
060 S   C1   SING N N 7  
060 C1  CA   SING N N 8  
060 C1  H1   SING N N 9  
060 C1  H1A  SING N N 10 
060 CA  C    SING N N 11 
060 CA  HA   SING N N 12 
060 C   OXT  SING N N 13 
060 OXT HXT  SING N N 14 
060 O   C    DOUB N N 15 
060 N   H2   SING N N 16 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
060 SMILES           ACDLabs              12.01 "O=C(O)C(N)CSC"                                                      
060 InChI            InChI                1.03  "InChI=1S/C4H9NO2S/c1-8-2-3(5)4(6)7/h3H,2,5H2,1H3,(H,6,7)/t3-/m1/s1" 
060 InChIKey         InChI                1.03  IDIDJDIHTAOVLG-GSVOUGTGSA-N                                          
060 SMILES_CANONICAL CACTVS               3.385 "CSC[C@@H](N)C(O)=O"                                                 
060 SMILES           CACTVS               3.385 "CSC[CH](N)C(O)=O"                                                   
060 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CSC[C@H](C(=O)O)N"                                                  
060 SMILES           "OpenEye OEToolkits" 1.9.2 "CSCC(C(=O)O)N"                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
060 "SYSTEMATIC NAME" ACDLabs              12.01 S-methyl-D-cysteine                             
060 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-3-methylsulfanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
060 "Create component"  2013-01-25 EBI  
060 "Initial release"   2013-03-20 RCSB 
060 "Modify descriptor" 2014-09-05 RCSB 
060 "Modify backbone"   2023-11-03 PDBE 
# 
