data_AR0
# 
_chem_comp.id                                    AR0 
_chem_comp.name                                  "4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H25 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2010-09-17 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        311.380 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AR0 
_chem_comp.pdbx_model_coordinates_details        "not provided" 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HBT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AR0 N   N   N 0 1 N N N Y Y N 16.043 18.541 20.102 -1.706 2.075  -0.526 N   AR0 1  
AR0 CA  C1  C 0 1 N N S Y N N 14.773 18.730 19.416 -1.647 0.878  0.323  C1  AR0 2  
AR0 C2  C2  C 0 1 N N R Y N N 14.958 19.689 18.234 -0.292 0.191  0.142  C2  AR0 3  
AR0 O1  O1  O 0 1 N N N N N N 13.683 19.850 17.644 -0.235 -0.974 0.968  O1  AR0 4  
AR0 C3  C3  C 0 1 N N N N N N 13.726 19.272 20.387 -2.766 -0.087 -0.077 C3  AR0 5  
AR0 C4  C4  C 0 1 N N N N N N 13.298 18.285 21.418 -4.123 0.554  0.221  C4  AR0 6  
AR0 C5  C5  C 0 1 N N N N N N 12.438 18.928 22.459 -5.241 -0.411 -0.179 C5  AR0 7  
AR0 N2  N2  N 0 1 N N N N N N 11.676 17.919 23.178 -6.540 0.203  0.106  N2  AR0 8  
AR0 C6  C6  C 0 1 N N N N N N 10.939 18.151 24.255 -7.694 -0.478 -0.171 C6  AR0 9  
AR0 N3  N3  N 0 1 N N N N N N 10.862 19.385 24.760 -7.636 -1.699 -0.700 N3  AR0 10 
AR0 N4  N4  N 1 1 N N N N N N 10.258 17.160 24.816 -8.875 0.080  0.089  N4  AR0 11 
AR0 C7  C7  C 0 1 N N N Y N N 15.951 19.096 17.188 0.826  1.155  0.542  C7  AR0 12 
AR0 N5  N5  N 1 1 Y N N Y N N 15.468 18.190 16.158 2.125  0.541  0.257  N5  AR0 13 
AR0 C8  C8  C 0 1 Y N N Y N N 15.103 18.711 14.968 2.679  0.730  -0.925 C8  AR0 14 
AR0 C9  C9  C 0 1 Y N N Y N N 14.575 17.865 14.009 3.903  0.167  -1.230 C9  AR0 15 
AR0 C10 C10 C 0 1 Y N N Y N N 14.417 16.494 14.266 4.550  -0.603 -0.275 C10 AR0 16 
AR0 C11 C11 C 0 1 Y N N N N N 14.812 16.000 15.499 3.937  -0.778 0.957  C11 AR0 17 
AR0 C12 C12 C 0 1 Y N N N N N 15.345 16.856 16.469 2.714  -0.180 1.191  C12 AR0 18 
AR0 C13 C13 C 0 1 N N N Y N N 13.835 15.578 13.206 5.886  -1.235 -0.568 C13 AR0 19 
AR0 C   C   C 0 1 N N N Y N Y 12.959 16.371 12.271 6.988  -0.285 -0.175 C   AR0 20 
AR0 O   O   O 0 1 N N N Y N Y 11.784 16.640 12.568 6.716  0.795  0.295  O   AR0 21 
AR0 OXT OXT O 0 1 N Y N Y N Y 13.541 16.703 11.121 8.272  -0.637 -0.348 OXT AR0 22 
AR0 H   H   H 0 1 N N N Y Y N 15.917 17.915 20.872 -1.593 1.834  -1.499 H   AR0 23 
AR0 HA  H1  H 0 1 N N N Y N N 14.422 17.760 19.033 -1.772 1.166  1.367  H1  AR0 24 
AR0 H3  H3  H 0 1 N N N N N N 14.158 20.141 20.905 -2.693 -0.306 -1.142 H3  AR0 25 
AR0 H4  H4  H 0 1 N N N N N N 12.839 19.564 19.805 -2.668 -1.012 0.491  H4  AR0 26 
AR0 H5  H5  H 0 1 N N N N N N 12.725 17.484 20.928 -4.195 0.773  1.286  H5  AR0 27 
AR0 H6  H6  H 0 1 N N N N N N 14.192 17.867 21.903 -4.220 1.479  -0.347 H6  AR0 28 
AR0 H7  H7  H 0 1 N N N N N N 13.077 19.473 23.169 -5.168 -0.629 -1.244 H7  AR0 29 
AR0 H8  H8  H 0 1 N N N N N N 11.743 19.627 21.972 -5.143 -1.336 0.389  H8  AR0 30 
AR0 H9  H9  H 0 1 N N N N N N 11.711 16.981 22.834 -6.583 1.092  0.491  H9  AR0 31 
AR0 H10 H10 H 0 1 N N N N N N 10.291 19.563 25.561 -6.775 -2.105 -0.888 H10 AR0 32 
AR0 H11 H11 H 0 1 N N N N N N 11.376 20.131 24.337 -8.454 -2.182 -0.896 H11 AR0 33 
AR0 H12 H12 H 0 1 N N N N N N 9.687  17.337 25.617 -9.693 -0.403 -0.108 H12 AR0 34 
AR0 H13 H13 H 0 1 N N N N N N 10.316 16.236 24.437 -8.918 0.969  0.474  H13 AR0 35 
AR0 H14 H14 H 0 1 N N N Y N N 16.385 19.956 16.658 0.729  2.080  -0.026 H14 AR0 36 
AR0 H15 H15 H 0 1 N N N Y N N 16.699 18.532 17.764 0.753  1.374  1.608  H15 AR0 37 
AR0 H16 H16 H 0 1 N N N Y N N 15.221 19.766 14.768 2.169  1.330  -1.664 H16 AR0 38 
AR0 H17 H17 H 0 1 N N N Y N N 14.280 18.265 13.050 4.351  0.324  -2.200 H17 AR0 39 
AR0 H18 H18 H 0 1 N N N N N N 14.708 14.947 15.713 4.412  -1.372 1.724  H18 AR0 40 
AR0 H19 H19 H 0 1 N N N N N N 15.651 16.480 17.434 2.232  -0.308 2.149  H19 AR0 41 
AR0 H20 H20 H 0 1 N N N Y N N 14.653 15.115 12.635 5.984  -2.159 0.000  H20 AR0 42 
AR0 H21 H21 H 0 1 N N N Y N N 13.235 14.794 13.691 5.958  -1.454 -1.634 H21 AR0 43 
AR0 HXT HXT H 0 1 N Y N Y N Y 12.920 17.171 10.575 8.943  0.005  -0.081 HXT AR0 44 
AR0 H2  H2  H 0 1 N Y N Y Y N 16.711 18.156 19.466 -2.566 2.582  -0.377 H2  AR0 45 
AR0 H24 H24 H 0 1 N Y N Y N N 15.373 20.649 18.575 -0.168 -0.098 -0.901 H24 AR0 46 
AR0 H25 H25 H 0 1 N N N N N N 13.749 20.440 16.902 -0.339 -0.792 1.912  H25 AR0 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AR0 N   CA  SING N N 1  
AR0 N   H   SING N N 2  
AR0 N   H2  SING N N 3  
AR0 CA  C2  SING N N 4  
AR0 CA  C3  SING N N 5  
AR0 CA  HA  SING N N 6  
AR0 C2  O1  SING N N 7  
AR0 C2  C7  SING N N 8  
AR0 C3  C4  SING N N 9  
AR0 C3  H3  SING N N 10 
AR0 C3  H4  SING N N 11 
AR0 C4  C5  SING N N 12 
AR0 C4  H5  SING N N 13 
AR0 C4  H6  SING N N 14 
AR0 C5  N2  SING N N 15 
AR0 C5  H7  SING N N 16 
AR0 C5  H8  SING N N 17 
AR0 N2  C6  SING N N 18 
AR0 N2  H9  SING N N 19 
AR0 C6  N3  SING N N 20 
AR0 C6  N4  DOUB N N 21 
AR0 N3  H10 SING N N 22 
AR0 N3  H11 SING N N 23 
AR0 N4  H12 SING N N 24 
AR0 N4  H13 SING N N 25 
AR0 C7  N5  SING N N 26 
AR0 C7  H14 SING N N 27 
AR0 C7  H15 SING N N 28 
AR0 N5  C8  SING Y N 29 
AR0 N5  C12 DOUB Y N 30 
AR0 C8  C9  DOUB Y N 31 
AR0 C8  H16 SING N N 32 
AR0 C9  C10 SING Y N 33 
AR0 C9  H17 SING N N 34 
AR0 C10 C11 DOUB Y N 35 
AR0 C10 C13 SING N N 36 
AR0 C11 C12 SING Y N 37 
AR0 C11 H18 SING N N 38 
AR0 C12 H19 SING N N 39 
AR0 C13 C   SING N N 40 
AR0 C13 H20 SING N N 41 
AR0 C13 H21 SING N N 42 
AR0 C   O   DOUB N N 43 
AR0 C   OXT SING N N 44 
AR0 OXT HXT SING N N 45 
AR0 C2  H24 SING N N 46 
AR0 O1  H25 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AR0 SMILES           ACDLabs              12.01 "O=C(O)Cc1cc[n+](cc1)CC(O)C(N)CCCNC(=[NH2+])\N"                                                                                                              
AR0 SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCCNC(N)=[NH2+])[C@H](O)C[n+]1ccc(CC(O)=O)cc1"                                                                                                      
AR0 SMILES           CACTVS               3.370 "N[CH](CCCNC(N)=[NH2+])[CH](O)C[n+]1ccc(CC(O)=O)cc1"                                                                                                         
AR0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1c[n+](ccc1CC(=O)O)C[C@H]([C@H](CCCNC(=[NH2+])N)N)O"                                                                                                       
AR0 SMILES           "OpenEye OEToolkits" 1.7.0 "c1c[n+](ccc1CC(=O)O)CC(C(CCCNC(=[NH2+])N)N)O"                                                                                                               
AR0 InChI            InChI                1.03  "InChI=1S/C14H23N5O3/c15-11(2-1-5-18-14(16)17)12(20)9-19-6-3-10(4-7-19)8-13(21)22/h3-4,6-7,11-12,20H,1-2,5,8-9,15H2,(H4-,16,17,18,21,22)/p+2/t11-,12+/m0/s1" 
AR0 InChIKey         InChI                1.03  IANDEMWLHCVUSG-NWDGAFQWSA-P                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AR0 "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol" 
AR0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S,5R)-4-azanyl-6-[4-(carboxymethyl)pyridin-1-ium-1-yl]-5-hydroxy-hexyl]amino]methylidene]azanium"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AR0 "Create component"     2010-09-17 RCSB 
AR0 "Modify aromatic_flag" 2011-06-04 RCSB 
AR0 "Modify descriptor"    2011-06-04 RCSB 
AR0 "Modify backbone"      2023-11-03 PDBE 
# 
