data_LD0
#

_chem_comp.id                                   LD0
_chem_comp.name                                 "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H19 N5 O5 S3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-03-01
_chem_comp.pdbx_modified_date                   2022-05-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.526
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LD0
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7U49
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LD0  C15  C1   C  0  1  N  N  N  -50.491  14.221  36.728  -0.491  -1.648  -1.510  C15  LD0   1  
LD0  C17  C2   C  0  1  N  N  R  -51.813  14.694  34.528  -1.250  -0.591   0.601  C17  LD0   2  
LD0  C20  C3   C  0  1  N  N  R  -53.280  12.296  33.397  -3.981   0.732   0.421  C20  LD0   3  
LD0  C21  C4   C  0  1  N  N  N  -51.991  12.150  33.813  -2.836   1.747   0.521  C21  LD0   4  
LD0  C01  C5   C  0  1  N  N  N  -53.437  17.870  40.582   5.924  -3.477  -0.311  C01  LD0   5  
LD0  C04  C6   C  0  1  N  N  N  -54.476  15.584  38.364   3.581  -0.770   0.042  C04  LD0   6  
LD0  C05  C7   C  0  1  Y  N  N  -55.689  15.283  37.412   3.634   0.698   0.210  C05  LD0   7  
LD0  C06  C8   C  0  1  Y  N  N  -56.852  16.077  37.361   4.782   1.396   0.112  C06  LD0   8  
LD0  C08  C9   C  0  1  Y  N  N  -56.784  14.089  35.776   2.716   2.706   0.591  C08  LD0   9  
LD0  C11  C10  C  0  1  N  N  N  -53.094  14.997  37.981   2.274  -1.469   0.035  C11  LD0  10  
LD0  C14  C11  C  0  1  N  N  R  -51.814  13.981  35.909  -0.160  -1.442  -0.054  C14  LD0  11  
LD0  C19  C12  C  0  1  N  N  S  -53.791  13.902  33.031  -3.607  -0.543   1.179  C19  LD0  12  
LD0  C23  C13  C  0  1  N  N  N  -54.307  11.348  33.963  -4.233   0.394  -1.050  C23  LD0  13  
LD0  C25  C14  C  0  1  N  N  N  -54.917  14.138  31.913  -4.823  -1.425   1.294  C25  LD0  14  
LD0  N03  N1   N  0  1  N  N  N  -54.588  16.288  39.390   4.684  -1.449  -0.100  N03  LD0  15  
LD0  N09  N2   N  0  1  Y  N  N  -55.699  14.229  36.538   2.546   1.428   0.464  N09  LD0  16  
LD0  N10  N3   N  0  1  N  N  N  -57.023  13.048  34.784   1.712   3.622   0.858  N10  LD0  17  
LD0  N13  N4   N  0  1  N  N  N  -53.007  14.567  36.568   1.130  -0.758   0.062  N13  LD0  18  
LD0  N18  N5   N  0  1  N  N  N  -53.312  15.023  33.971  -2.547  -1.272   0.480  N18  LD0  19  
LD0  O02  O1   O  0  1  N  N  N  -53.448  16.525  40.190   4.643  -2.864  -0.153  O02  LD0  20  
LD0  O12  O2   O  0  1  N  N  N  -52.208  14.904  38.733   2.235  -2.683   0.006  O12  LD0  21  
LD0  O16  O3   O  0  1  N  N  N  -49.887  15.262  36.602   0.274  -1.267  -2.362  O16  LD0  22  
LD0  O26  O4   O  0  1  N  N  N  -54.781  13.623  30.737  -4.964  -2.360   0.541  O26  LD0  23  
LD0  O27  O5   O  0  1  N  N  N  -55.963  14.821  32.180  -5.749  -1.174   2.233  O27  LD0  24  
LD0  S07  S1   S  0  1  Y  N  N  -57.835  15.354  36.186   4.418   3.100   0.373  S07  LD0  25  
LD0  S22  S2   S  0  1  N  N  N  -51.215  13.676  33.643  -1.352   1.020  -0.236  S22  LD0  26  
LD0  S24  S3   S  0  1  N  N  N  -55.545  11.115  32.674  -4.825   1.873  -1.918  S24  LD0  27  
LD0  H1   H1   H  0  1  N  N  N  -50.124  13.459  37.400  -1.411  -2.140  -1.790  H1   LD0  28  
LD0  H2   H2   H  0  1  N  N  N  -51.215  15.617  34.562  -1.012  -0.441   1.655  H2   LD0  29  
LD0  H3   H3   H  0  1  N  N  N  -53.212  11.908  32.370  -4.885   1.161   0.854  H3   LD0  30  
LD0  H4   H4   H  0  1  N  N  N  -51.970  11.834  34.866  -3.108   2.659  -0.010  H4   LD0  31  
LD0  H5   H5   H  0  1  N  N  N  -51.480  11.398  33.194  -2.643   1.977   1.569  H5   LD0  32  
LD0  H6   H6   H  0  1  N  N  N  -52.552  18.063  41.206   6.378  -3.134  -1.240  H6   LD0  33  
LD0  H7   H7   H  0  1  N  N  N  -53.404  18.512  39.689   6.563  -3.205   0.529  H7   LD0  34  
LD0  H8   H8   H  0  1  N  N  N  -54.347  18.091  41.159   5.806  -4.560  -0.342  H8   LD0  35  
LD0  H9   H9   H  0  1  N  N  N  -57.070  16.958  37.946   5.759   0.982  -0.092  H9   LD0  36  
LD0  H10  H10  H  0  1  N  N  N  -51.953  12.900  35.760  -0.105  -2.409   0.446  H10  LD0  37  
LD0  H11  H11  H  0  1  N  N  N  -52.967  14.061  32.320  -3.263  -0.277   2.179  H11  LD0  38  
LD0  H12  H12  H  0  1  N  N  N  -54.770  11.781  34.862  -3.306   0.051  -1.508  H12  LD0  39  
LD0  H13  H13  H  0  1  N  N  N  -53.838  10.387  34.219  -4.985  -0.392  -1.118  H13  LD0  40  
LD0  H14  H14  H  0  1  N  N  N  -57.920  13.186  34.365   1.924   4.565   0.938  H14  LD0  41  
LD0  H15  H15  H  0  1  N  N  N  -56.315  13.091  34.079   0.796   3.321   0.965  H15  LD0  42  
LD0  H16  H16  H  0  1  N  N  N  -53.826  14.682  36.006   1.160   0.207   0.157  H16  LD0  43  
LD0  H17  H17  H  0  1  N  N  N  -53.295  15.889  33.470  -2.488  -2.224   0.807  H17  LD0  44  
LD0  H19  H19  H  0  1  N  N  N  -56.527  14.850  31.416  -6.511  -1.768   2.268  H19  LD0  45  
LD0  H20  H20  H  0  1  N  N  N  -56.378  10.295  33.244  -5.001   1.435  -3.177  H20  LD0  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LD0  O26  C25  DOUB  N  N   1  
LD0  C25  O27  SING  N  N   2  
LD0  C25  C19  SING  N  N   3  
LD0  S24  C23  SING  N  N   4  
LD0  C19  C20  SING  N  N   5  
LD0  C19  N18  SING  N  N   6  
LD0  C20  C21  SING  N  N   7  
LD0  C20  C23  SING  N  N   8  
LD0  S22  C21  SING  N  N   9  
LD0  S22  C17  SING  N  N  10  
LD0  N18  C17  SING  N  N  11  
LD0  C17  C14  SING  N  N  12  
LD0  N10  C08  SING  N  N  13  
LD0  C08  S07  SING  Y  N  14  
LD0  C08  N09  DOUB  Y  N  15  
LD0  C14  N13  SING  N  N  16  
LD0  C14  C15  SING  N  N  17  
LD0  S07  C06  SING  Y  N  18  
LD0  N09  C05  SING  Y  N  19  
LD0  N13  C11  SING  N  N  20  
LD0  O16  C15  DOUB  N  N  21  
LD0  C06  C05  DOUB  Y  N  22  
LD0  C05  C04  SING  N  N  23  
LD0  C11  C04  SING  N  N  24  
LD0  C11  O12  DOUB  N  N  25  
LD0  C04  N03  DOUB  N  Z  26  
LD0  N03  O02  SING  N  N  27  
LD0  O02  C01  SING  N  N  28  
LD0  C15  H1   SING  N  N  29  
LD0  C17  H2   SING  N  N  30  
LD0  C20  H3   SING  N  N  31  
LD0  C21  H4   SING  N  N  32  
LD0  C21  H5   SING  N  N  33  
LD0  C01  H6   SING  N  N  34  
LD0  C01  H7   SING  N  N  35  
LD0  C01  H8   SING  N  N  36  
LD0  C06  H9   SING  N  N  37  
LD0  C14  H10  SING  N  N  38  
LD0  C19  H11  SING  N  N  39  
LD0  C23  H12  SING  N  N  40  
LD0  C23  H13  SING  N  N  41  
LD0  N10  H14  SING  N  N  42  
LD0  N10  H15  SING  N  N  43  
LD0  N13  H16  SING  N  N  44  
LD0  N18  H17  SING  N  N  45  
LD0  O27  H19  SING  N  N  46  
LD0  S24  H20  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LD0  SMILES            ACDLabs               12.01  "SCC1CSC(NC1C(=O)O)C(C=O)NC(=O)C(=N\OC)/c1csc(N)n1"  
LD0  InChI             InChI                 1.03   "InChI=1S/C14H19N5O5S3/c1-24-19-10(8-5-27-14(15)17-8)11(21)16-7(2-20)12-18-9(13(22)23)6(3-25)4-26-12/h2,5-7,9,12,18,25H,3-4H2,1H3,(H2,15,17)(H,16,21)(H,22,23)/b19-10-/t6-,7-,9+,12-/m1/s1"  
LD0  InChIKey          InChI                 1.03   KKQVBXSQHHBKNE-AZYSTIKISA-N  
LD0  SMILES_CANONICAL  CACTVS                3.385  "CO/N=C(C(=O)N[C@H](C=O)[C@@H]1N[C@@H]([C@H](CS)CS1)C(O)=O)/c2csc(N)n2"  
LD0  SMILES            CACTVS                3.385  "CON=C(C(=O)N[CH](C=O)[CH]1N[CH]([CH](CS)CS1)C(O)=O)c2csc(N)n2"  
LD0  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO/N=C(/c1csc(n1)N)\C(=O)N[C@H](C=O)[C@@H]2NC([C@@H](CS2)CS)C(=O)O"  
LD0  SMILES            "OpenEye OEToolkits"  2.0.7  "CON=C(c1csc(n1)N)C(=O)NC(C=O)C2NC(C(CS2)CS)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LD0  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,4S,5R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid"  
LD0  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},5~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(sulfanylmethyl)-1,3-thiazinane-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LD0  "Create component"    2022-03-01  RCSB  
LD0  "Modify value order"  2022-03-29  RCSB  
LD0  "Initial release"     2022-05-25  RCSB  
##
