data_Z50
# 
_chem_comp.id                                    Z50 
_chem_comp.name                                  "3-{[(3-{[(2-aminoethyl)sulfanyl]methyl}-5-(4-methyl-1H-1,2,3-triazol-1-yl)phenyl)methyl]sulfanyl}propanoic acid" 
_chem_comp.type                                  "PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H22 N4 O2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "3-[[3-(2-azanylethylsulfanylmethyl)-5-(4-methyl-1,2,3-triazol-1-yl)phenyl]methylsulfanyl]propanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-22 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        366.501 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z50 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z50 C1  C1  C 0 1 N N N N N N -1.964 5.969  -0.741 4.779  -5.097 -0.939 C1  Z50 1  
Z50 C2  C2  C 0 1 Y N N N N N -1.310 4.691  -0.325 3.496  -4.381 -0.605 C2  Z50 2  
Z50 C3  C3  C 0 1 Y N N N N N -1.708 3.379  -0.473 3.369  -3.101 -0.183 C3  Z50 3  
Z50 N1  N1  N 0 1 Y N N N N N -0.727 2.645  0.091  2.036  -2.892 -0.009 N1  Z50 4  
Z50 N2  N2  N 0 1 Y N N N N N 0.243  3.457  0.574  1.418  -3.981 -0.309 N2  Z50 5  
Z50 N3  N3  N 0 1 Y N N N N N -0.115 4.695  0.318  2.258  -4.884 -0.673 N3  Z50 6  
Z50 C4  C4  C 0 1 Y N N N N N -0.613 1.229  0.225  1.439  -1.699 0.424  C4  Z50 7  
Z50 C5  C5  C 0 1 Y N N N N N -1.598 0.524  0.894  2.214  -0.564 0.617  C5  Z50 8  
Z50 C6  C6  C 0 1 Y N N N Y N -1.500 -0.860 1.032  1.623  0.610  1.042  C6  Z50 9  
Z50 C7  C7  C 0 1 N N N N Y N -2.570 -1.634 1.760  2.463  1.843  1.252  C7  Z50 10 
Z50 S1  S1  S 0 1 N N N N Y N -4.064 -1.896 0.755  2.536  2.794  -0.291 S1  Z50 11 
Z50 C8  C8  C 0 1 N N N N Y N -3.479 -3.043 -0.520 3.573  4.215  0.153  C8  Z50 12 
Z50 CA  CA  C 0 1 N N N N Y N -3.135 -2.362 -1.833 3.733  5.130  -1.062 CA  Z50 13 
Z50 N   N   N 0 1 N N N Y Y N -2.511 -3.272 -2.800 4.573  6.280  -0.702 N   Z50 14 
Z50 C10 C10 C 0 1 Y N N N Y N -0.398 -1.513 0.484  0.261  0.655  1.276  C10 Z50 15 
Z50 C11 C11 C 0 1 Y N N N Y N 0.598  -0.810 -0.192 -0.514 -0.475 1.085  C11 Z50 16 
Z50 C12 C12 C 0 1 N N N N Y N 1.785  -1.535 -0.778 -1.998 -0.422 1.341  C12 Z50 17 
Z50 S2  S2  S 0 1 N N N N Y N 3.052  -1.941 0.464  -2.858 0.056  -0.184 S2  Z50 18 
Z50 C13 C13 C 0 1 N N N N Y N 3.699  -0.299 0.885  -4.601 0.064  0.317  C13 Z50 19 
Z50 C14 C14 C 0 1 N N N N Y N 4.822  -0.354 1.909  -5.473 0.455  -0.878 C14 Z50 20 
Z50 C   C   C 0 1 N N N N Y Y 6.096  -0.924 1.348  -6.922 0.462  -0.463 C   Z50 21 
Z50 OXT OXT O 0 1 N Y N N Y Y 6.703  -0.132 0.502  -7.874 0.778  -1.354 OXT Z50 22 
Z50 O   O   O 0 1 N N N N Y Y 6.522  -2.022 1.655  -7.226 0.184  0.673  O   Z50 23 
Z50 C16 C16 C 0 1 Y N N N N N 0.478  0.573  -0.316 0.070  -1.650 0.654  C16 Z50 24 
Z50 H1  H1  H 0 1 N N N N N N -1.332 6.819  -0.443 5.168  -5.583 -0.045 H1  Z50 25 
Z50 H12 H12 H 0 1 N N N N N N -2.096 5.975  -1.833 4.587  -5.847 -1.707 H12 Z50 26 
Z50 H3  H3  H 0 1 N Y N N N N -2.946 6.054  -0.253 5.511  -4.378 -1.309 H3  Z50 27 
Z50 H4  H4  H 0 1 N N N N N N -2.612 3.017  -0.940 4.165  -2.389 -0.018 H4  Z50 28 
Z50 H5  H5  H 0 1 N N N N N N -2.446 1.048  1.311  3.278  -0.598 0.435  H5  Z50 29 
Z50 H6  H6  H 0 1 N N N N Y N -2.162 -2.615 2.044  2.020  2.457  2.036  H6  Z50 30 
Z50 H7  H7  H 0 1 N N N N Y N -2.850 -1.077 2.666  3.471  1.550  1.546  H7  Z50 31 
Z50 H8  H8  H 0 1 N N N N Y N -2.579 -3.552 -0.145 3.102  4.769  0.965  H8  Z50 32 
Z50 H9  H9  H 0 1 N N N N Y N -4.268 -3.786 -0.709 4.553  3.862  0.475  H9  Z50 33 
Z50 HA2 HA2 H 0 1 N N N N Y N -4.060 -1.961 -2.274 4.205  4.576  -1.874 HA2 Z50 34 
Z50 HA3 HA3 H 0 1 N N N N Y N -2.438 -1.536 -1.628 2.753  5.482  -1.384 HA3 Z50 35 
Z50 H   H   H 0 1 N N N Y Y N -2.306 -2.774 -3.643 4.694  6.900  -1.489 H   Z50 36 
Z50 H2  H2  H 0 1 N Y N Y Y N -1.664 -3.638 -2.415 4.191  6.773  0.091  H2  Z50 37 
Z50 H14 H14 H 0 1 N N N N Y N -0.314 -2.585 0.585  -0.199 1.574  1.609  H14 Z50 38 
Z50 H15 H15 H 0 1 N N N N Y N 1.433  -2.470 -1.238 -2.347 -1.403 1.662  H15 Z50 39 
Z50 H16 H16 H 0 1 N N N N Y N 2.241  -0.896 -1.548 -2.207 0.311  2.120  H16 Z50 40 
Z50 H17 H17 H 0 1 N N N N Y N 4.082  0.174  -0.032 -4.885 -0.929 0.664  H17 Z50 41 
Z50 H18 H18 H 0 1 N N N N Y N 2.878  0.308  1.295  -4.745 0.785  1.122  H18 Z50 42 
Z50 H19 H19 H 0 1 N N N N Y N 5.022  0.667  2.267  -5.190 1.448  -1.226 H19 Z50 43 
Z50 H20 H20 H 0 1 N N N N Y N 4.498  -0.981 2.752  -5.330 -0.266 -1.684 H20 Z50 44 
Z50 HXT HXT H 0 1 N Y N N Y Y 7.496  -0.551 0.188  -8.789 0.769  -1.041 HXT Z50 45 
Z50 H22 H22 H 0 1 N N N N N N 1.240  1.135  -0.836 -0.536 -2.530 0.501  H22 Z50 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z50 C1  C2  SING N N 1  
Z50 C2  C3  DOUB Y N 2  
Z50 C3  N1  SING Y N 3  
Z50 N1  N2  SING Y N 4  
Z50 N2  N3  DOUB Y N 5  
Z50 N1  C4  SING N N 6  
Z50 C4  C5  DOUB Y N 7  
Z50 C5  C6  SING Y N 8  
Z50 C6  C7  SING N N 9  
Z50 C7  S1  SING N N 10 
Z50 S1  C8  SING N N 11 
Z50 C8  CA  SING N N 12 
Z50 CA  N   SING N N 13 
Z50 C6  C10 DOUB Y N 14 
Z50 C10 C11 SING Y N 15 
Z50 C11 C12 SING N N 16 
Z50 C12 S2  SING N N 17 
Z50 S2  C13 SING N N 18 
Z50 C13 C14 SING N N 19 
Z50 C14 C   SING N N 20 
Z50 C   OXT SING N N 21 
Z50 C   O   DOUB N N 22 
Z50 C11 C16 DOUB Y N 23 
Z50 C2  N3  SING Y N 24 
Z50 C4  C16 SING Y N 25 
Z50 C1  H1  SING N N 26 
Z50 C1  H12 SING N N 27 
Z50 C1  H3  SING N N 28 
Z50 C3  H4  SING N N 29 
Z50 C5  H5  SING N N 30 
Z50 C7  H6  SING N N 31 
Z50 C7  H7  SING N N 32 
Z50 C8  H8  SING N N 33 
Z50 C8  H9  SING N N 34 
Z50 CA  HA2 SING N N 35 
Z50 CA  HA3 SING N N 36 
Z50 N   H   SING N N 37 
Z50 N   H2  SING N N 38 
Z50 C10 H14 SING N N 39 
Z50 C12 H15 SING N N 40 
Z50 C12 H16 SING N N 41 
Z50 C13 H17 SING N N 42 
Z50 C13 H18 SING N N 43 
Z50 C14 H19 SING N N 44 
Z50 C14 H20 SING N N 45 
Z50 OXT HXT SING N N 46 
Z50 C16 H22 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z50 InChI            InChI                1.06  "InChI=1S/C16H22N4O2S2/c1-12-9-20(19-18-12)15-7-13(10-23-4-2-16(21)22)6-14(8-15)11-24-5-3-17/h6-9H,2-5,10-11,17H2,1H3,(H,21,22)" 
Z50 InChIKey         InChI                1.06  PPTSONMLFVJRDH-UHFFFAOYSA-N                                                                                                      
Z50 SMILES_CANONICAL CACTVS               3.385 "Cc1cn(nn1)c2cc(CSCCN)cc(CSCCC(O)=O)c2"                                                                                          
Z50 SMILES           CACTVS               3.385 "Cc1cn(nn1)c2cc(CSCCN)cc(CSCCC(O)=O)c2"                                                                                          
Z50 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cn(nn1)c2cc(cc(c2)CSCCN)CSCCC(=O)O"                                                                                          
Z50 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cn(nn1)c2cc(cc(c2)CSCCN)CSCCC(=O)O"                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           Z50 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[[3-(2-azanylethylsulfanylmethyl)-5-(4-methyl-1,2,3-triazol-1-yl)phenyl]methylsulfanyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z50 "Create component"   2024-02-14 PDBE 
Z50 "Modify descriptor"  2024-02-14 PDBE 
Z50 "Other modification" 2024-02-14 PDBE 
Z50 "Initial release"    2024-04-24 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      Z50 
_pdbx_chem_comp_synonyms.name         "3-[[3-(2-azanylethylsulfanylmethyl)-5-(4-methyl-1,2,3-triazol-1-yl)phenyl]methylsulfanyl]propanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
