data_DN2
#

_chem_comp.id                                   DN2
_chem_comp.name                                 "3-({(2S)-2-[({(1S)-1-[({(1S)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARBONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H31 F2 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PEPTIDOMIMETIC INHIBITOR"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-07-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       567.602
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DN2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1W3C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DN2  N1    N1    N  0  1  N  N  N  23.451  29.490  -3.548  -0.621   0.100  -2.715  N1    DN2   1  
DN2  C2    C2    C  0  1  N  N  S  22.731  28.141  -3.638   0.164  -1.132  -2.619  C2    DN2   2  
DN2  C1    C1    C  0  1  N  N  N  22.836  27.409  -2.250   0.210  -1.613  -1.192  C1    DN2   3  
DN2  O2    O2    O  0  1  N  N  N  23.849  26.691  -2.081   0.127  -2.798  -0.948  O2    DN2   4  
DN2  N3    N3    N  0  1  N  N  N  21.891  27.571  -1.270   0.344  -0.726  -0.186  N3    DN2   5  
DN2  C4    C4    C  0  1  N  N  S  21.777  26.599  -0.170   0.261  -1.178   1.204  C4    DN2   6  
DN2  C5    C5    C  0  1  N  N  N  20.540  26.876   0.710   1.666  -1.487   1.725  C5    DN2   7  
DN2  C6    C6    C  0  1  N  N  N  19.050  28.708   1.753   3.713  -2.866   1.339  C6    DN2   8  
DN2  C7    C7    C  0  1  N  N  N  21.599  28.756   1.972   1.460  -3.946   1.334  C7    DN2   9  
DN2  C8    C8    C  0  1  N  N  N  20.397  28.355   1.121   2.241  -2.683   0.964  C8    DN2  10  
DN2  C9    C9    C  0  1  N  N  N  21.674  25.174  -0.773  -0.360  -0.096   2.048  C9    DN2  11  
DN2  O10   O10   O  0  1  N  N  N  21.032  24.974  -1.814  -0.701   0.950   1.537  O10   DN2  12  
DN2  N11   N11   N  0  1  N  N  N  22.691  24.339  -0.303  -0.539  -0.290   3.369  N11   DN2  13  
DN2  C12   C12   C  0  1  N  N  S  22.653  22.892  -0.482  -1.144   0.762   4.189  C12   DN2  14  
DN2  C13   C13   C  0  1  N  N  N  23.843  22.194  -1.158  -2.662   0.577   4.217  C13   DN2  15  
DN2  C14   C14   C  0  1  N  N  N  24.381  22.882  -2.398  -3.213   0.661   2.792  C14   DN2  16  
DN2  F15   F15   F  0  1  N  N  N  23.524  22.801  -3.276  -4.601   0.492   2.818  F15   DN2  17  
DN2  F16   F16   F  0  1  N  N  N  24.462  24.083  -2.169  -2.905   1.912   2.246  F16   DN2  18  
DN2  C17   C17   C  0  1  N  N  R  22.105  22.080   0.824  -0.593   0.678   5.614  C17   DN2  19  
DN2  C18   C18   C  0  1  N  N  N  21.715  20.677   0.112   0.901   0.860   5.587  C18   DN2  20  
DN2  O19   O19   O  0  1  N  N  N  20.751  20.742  -0.706   1.431   1.994   5.101  O19   DN2  21  
DN2  O20   O20   O  0  1  N  N  N  22.444  19.716   0.444   1.624  -0.014   6.002  O20   DN2  22  
DN2  O21   O21   O  0  1  N  N  N  20.794  22.640   1.142  -0.908  -0.599   6.172  O21   DN2  23  
DN2  C22   C22   C  0  1  N  N  N  23.601  27.388  -4.707   1.581  -0.904  -3.148  C22   DN2  24  
DN2  C23   C23   C  0  1  N  N  N  21.318  28.420  -4.225  -0.576  -2.151  -3.502  C23   DN2  25  
DN2  C24   C24   C  0  1  Y  N  N  22.544  30.430  -4.059  -1.722  -0.096  -3.549  C24   DN2  26  
DN2  C25   C25   C  0  1  Y  N  N  21.335  29.893  -4.470  -1.763  -1.389  -4.046  C25   DN2  27  
DN2  C26   C26   C  0  1  Y  N  N  22.803  31.782  -4.182  -2.726   0.803  -3.917  C26   DN2  28  
DN2  C27   C27   C  0  1  Y  N  N  20.334  30.688  -5.016  -2.781  -1.782  -4.894  C27   DN2  29  
DN2  C28   C28   C  0  1  Y  N  N  20.569  32.055  -5.132  -3.770  -0.886  -5.254  C28   DN2  30  
DN2  C29   C29   C  0  1  Y  N  N  21.803  32.595  -4.718  -3.739   0.406  -4.763  C29   DN2  31  
DN2  C30   C30   C  0  1  Y  N  N  22.953  26.231  -5.473   2.219   0.236  -2.398  C30   DN2  32  
DN2  C31   C31   C  0  1  Y  N  N  22.109  25.252  -4.836   2.985   0.019  -1.280  C31   DN2  33  
DN2  C32   C32   C  0  1  Y  N  N  21.093  24.785  -5.638   3.539   1.081  -0.638  C32   DN2  34  
DN2  S33   S33   S  0  1  Y  N  N  21.124  25.529  -7.174   3.007   2.435  -1.582  S33   DN2  35  
DN2  C34   C34   C  0  1  Y  N  N  22.478  26.455  -6.770   2.064   1.551  -2.811  C34   DN2  36  
DN2  C35   C35   C  0  1  N  N  N  22.969  27.628  -7.528   1.314   2.077  -3.954  C35   DN2  37  
DN2  O36   O36   O  0  1  N  N  N  23.970  28.199  -6.981   1.279   3.405  -4.183  O36   DN2  38  
DN2  O37   O37   O  0  1  N  N  N  22.389  27.954  -8.594   0.724   1.315  -4.696  O37   DN2  39  
DN2  H1    H1    H  0  1  N  N  N  24.390  29.667  -3.192  -0.406   0.932  -2.264  H1    DN2  40  
DN2  H3    H3    H  0  1  N  N  N  21.261  28.372  -1.303   0.496   0.210  -0.383  H3    DN2  41  
DN2  H4    H4    H  0  1  N  N  N  22.693  26.659   0.463  -0.351  -2.078   1.258  H4    DN2  42  
DN2  H5C1  1H5C  H  0  0  N  N  N  20.538  26.215   1.608   1.616  -1.722   2.788  H5C1  DN2  43  
DN2  H5C2  2H5C  H  0  0  N  N  N  19.611  26.513   0.211   2.308  -0.618   1.576  H5C2  DN2  44  
DN2  H6C1  1H6C  H  0  0  N  N  N  18.947  29.778   2.050   4.123  -3.718   0.797  H6C1  DN2  45  
DN2  H6C2  2H6C  H  0  0  N  N  N  18.842  28.041   2.622   4.270  -1.966   1.076  H6C2  DN2  46  
DN2  H6C3  3H6C  H  0  0  N  N  N  18.214  28.409   1.078   3.796  -3.043   2.412  H6C3  DN2  47  
DN2  H7C1  1H7C  H  0  0  N  N  N  21.496  29.826   2.269   1.569  -4.141   2.401  H7C1  DN2  48  
DN2  H7C2  2H7C  H  0  0  N  N  N  22.568  28.550   1.460   0.406  -3.803   1.096  H7C2  DN2  49  
DN2  H7C3  3H7C  H  0  0  N  N  N  21.740  28.084   2.850   1.849  -4.792   0.768  H7C3  DN2  50  
DN2  H8    H8    H  0  1  N  N  N  20.467  28.950   0.180   2.159  -2.505  -0.107  H8    DN2  51  
DN2  H11   H11   H  0  1  N  N  N  23.486  24.755   0.181  -0.267  -1.126   3.778  H11   DN2  52  
DN2  H12   H12   H  0  1  N  N  N  21.831  22.755  -1.223  -0.904   1.737   3.764  H12   DN2  53  
DN2  H131  1H13  H  0  0  N  N  N  23.583  21.135  -1.390  -2.902  -0.397   4.642  H131  DN2  54  
DN2  H132  2H13  H  0  0  N  N  N  24.664  22.038  -0.420  -3.112   1.360   4.827  H132  DN2  55  
DN2  H14   H14   H  0  1  N  N  N  25.356  22.452  -2.725  -2.762  -0.121   2.182  H14   DN2  56  
DN2  H17   H17   H  0  1  N  N  N  22.817  22.005   1.679  -1.044   1.461   6.224  H17   DN2  57  
DN2  H19   H19   H  0  1  N  N  N  20.522  19.919  -1.123   2.390   2.111   5.083  H19   DN2  58  
DN2  H21   H21   H  0  1  N  N  N  20.475  22.167   1.902  -0.492  -1.262   5.604  H21   DN2  59  
DN2  H221  1H22  H  0  0  N  N  N  24.541  27.028  -4.226   2.172  -1.809  -3.005  H221  DN2  60  
DN2  H222  2H22  H  0  0  N  N  N  24.006  28.128  -5.436   1.538  -0.662  -4.210  H222  DN2  61  
DN2  H231  1H23  H  0  0  N  N  N  20.473  28.065  -3.589   0.065  -2.487  -4.316  H231  DN2  62  
DN2  H232  2H23  H  0  0  N  N  N  21.056  27.804  -5.117  -0.910  -2.999  -2.904  H232  DN2  63  
DN2  H26   H26   H  0  1  N  N  N  23.771  32.206  -3.866  -2.708   1.814  -3.537  H26   DN2  64  
DN2  H27   H27   H  0  1  N  N  N  19.379  30.247  -5.348  -2.804  -2.792  -5.277  H27   DN2  65  
DN2  H28   H28   H  0  1  N  N  N  19.790  32.715  -5.548  -4.565  -1.194  -5.916  H28   DN2  66  
DN2  H29   H29   H  0  1  N  N  N  21.982  33.679  -4.819  -4.511   1.107  -5.043  H29   DN2  67  
DN2  H31   H31   H  0  1  N  N  N  22.263  24.908  -3.799   3.144  -0.984  -0.914  H31   DN2  68  
DN2  H32   H32   H  0  1  N  N  N  20.354  24.027  -5.328   4.160   1.082   0.244  H32   DN2  69  
DN2  H36   H36   H  0  1  N  N  N  24.285  28.951  -7.467   0.784   3.753  -4.937  H36   DN2  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DN2  N1   C2    SING  N  N   1  
DN2  N1   C24   SING  N  N   2  
DN2  N1   H1    SING  N  N   3  
DN2  C2   C1    SING  N  N   4  
DN2  C2   C22   SING  N  N   5  
DN2  C2   C23   SING  N  N   6  
DN2  C1   O2    DOUB  N  N   7  
DN2  C1   N3    SING  N  N   8  
DN2  N3   C4    SING  N  N   9  
DN2  N3   H3    SING  N  N  10  
DN2  C4   C5    SING  N  N  11  
DN2  C4   C9    SING  N  N  12  
DN2  C4   H4    SING  N  N  13  
DN2  C5   C8    SING  N  N  14  
DN2  C5   H5C1  SING  N  N  15  
DN2  C5   H5C2  SING  N  N  16  
DN2  C6   C8    SING  N  N  17  
DN2  C6   H6C1  SING  N  N  18  
DN2  C6   H6C2  SING  N  N  19  
DN2  C6   H6C3  SING  N  N  20  
DN2  C7   C8    SING  N  N  21  
DN2  C7   H7C1  SING  N  N  22  
DN2  C7   H7C2  SING  N  N  23  
DN2  C7   H7C3  SING  N  N  24  
DN2  C8   H8    SING  N  N  25  
DN2  C9   O10   DOUB  N  N  26  
DN2  C9   N11   SING  N  N  27  
DN2  N11  C12   SING  N  N  28  
DN2  N11  H11   SING  N  N  29  
DN2  C12  C13   SING  N  N  30  
DN2  C12  C17   SING  N  N  31  
DN2  C12  H12   SING  N  N  32  
DN2  C13  C14   SING  N  N  33  
DN2  C13  H131  SING  N  N  34  
DN2  C13  H132  SING  N  N  35  
DN2  C14  F15   SING  N  N  36  
DN2  C14  F16   SING  N  N  37  
DN2  C14  H14   SING  N  N  38  
DN2  C17  C18   SING  N  N  39  
DN2  C17  O21   SING  N  N  40  
DN2  C17  H17   SING  N  N  41  
DN2  C18  O19   SING  N  N  42  
DN2  C18  O20   DOUB  N  N  43  
DN2  O19  H19   SING  N  N  44  
DN2  O21  H21   SING  N  N  45  
DN2  C22  C30   SING  N  N  46  
DN2  C22  H221  SING  N  N  47  
DN2  C22  H222  SING  N  N  48  
DN2  C23  C25   SING  N  N  49  
DN2  C23  H231  SING  N  N  50  
DN2  C23  H232  SING  N  N  51  
DN2  C24  C25   DOUB  Y  N  52  
DN2  C24  C26   SING  Y  N  53  
DN2  C25  C27   SING  Y  N  54  
DN2  C26  C29   DOUB  Y  N  55  
DN2  C26  H26   SING  N  N  56  
DN2  C27  C28   DOUB  Y  N  57  
DN2  C27  H27   SING  N  N  58  
DN2  C28  C29   SING  Y  N  59  
DN2  C28  H28   SING  N  N  60  
DN2  C29  H29   SING  N  N  61  
DN2  C30  C31   SING  Y  N  62  
DN2  C30  C34   DOUB  Y  N  63  
DN2  C31  C32   DOUB  Y  N  64  
DN2  C31  H31   SING  N  N  65  
DN2  C32  S33   SING  Y  N  66  
DN2  C32  H32   SING  N  N  67  
DN2  S33  C34   SING  Y  N  68  
DN2  C34  C35   SING  N  N  69  
DN2  C35  O36   SING  N  N  70  
DN2  C35  O37   DOUB  N  N  71  
DN2  O36  H36   SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DN2  SMILES            ACDLabs               10.04  "O=C(O)C(O)C(NC(=O)C(NC(=O)C2(Nc1ccccc1C2)Cc3c(scc3)C(=O)O)CC(C)C)CC(F)F"  
DN2  SMILES_CANONICAL  CACTVS                3.341  "CC(C)C[C@H](NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[C@@H](CC(F)F)[C@@H](O)C(O)=O"  
DN2  SMILES            CACTVS                3.341  "CC(C)C[CH](NC(=O)[C]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[CH](CC(F)F)[CH](O)C(O)=O"  
DN2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(C)C[C@@H](C(=O)N[C@@H](CC(F)F)[C@H](C(=O)O)O)NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(=O)O"  
DN2  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C)CC(C(=O)NC(CC(F)F)C(C(=O)O)O)NC(=O)C1(Cc2ccccc2N1)Cc3ccsc3C(=O)O"  
DN2  InChI             InChI                 1.03   "InChI=1S/C26H31F2N3O7S/c1-13(2)9-18(22(33)29-17(10-19(27)28)20(32)23(34)35)30-25(38)26(11-14-5-3-4-6-16(14)31-26)12-15-7-8-39-21(15)24(36)37/h3-8,13,17-20,31-32H,9-12H2,1-2H3,(H,29,33)(H,30,38)(H,34,35)(H,36,37)/t17-,18-,20+,26-/m0/s1"  
DN2  InChIKey          InChI                 1.03   BEFPIHVRQQQFFB-QUPVEMFASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DN2  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-{[N-({(2S)-2-[(2-carboxythiophen-3-yl)methyl]-2,3-dihydro-1H-indol-2-yl}carbonyl)-L-leucyl]amino}-3,4,5-trideoxy-5,5-difluoro-L-threo-pentonic acid"  
DN2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "3-[[(2S)-2-[[(2S)-1-[[(2R,3S)-5,5-difluoro-1,2-dihydroxy-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamoyl]-1,3-dihydroindol-2-yl]methyl]thiophene-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DN2  "Create component"   2004-07-14  EBI   
DN2  "Modify descriptor"  2011-06-04  RCSB  
DN2  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DN2
_pdbx_chem_comp_synonyms.name        "PEPTIDOMIMETIC INHIBITOR"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
