data_XM2
#

_chem_comp.id                                   XM2
_chem_comp.name                                 "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-phenylalaninamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H44 N4 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-13
_chem_comp.pdbx_modified_date                   2020-12-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       596.714
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XM2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JQ4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XM2  C1   C1   C  0  1  Y  N  N  45.341   9.229  -18.106   9.457  -1.137  -1.662  C1   XM2   1  
XM2  C10  C2   C  0  1  N  N  N  44.148   8.411  -13.518  -1.132   3.295  -0.366  C10  XM2   2  
XM2  C11  C3   C  0  1  N  N  S  42.566   4.160  -14.806   1.532   0.885   0.966  C11  XM2   3  
XM2  C12  C4   C  0  1  N  N  N  41.919   2.831  -14.533   0.313   0.206   0.397  C12  XM2   4  
XM2  C13  C5   C  0  1  N  N  N  42.315   7.374  -12.201   0.243   4.130  -2.277  C13  XM2   5  
XM2  C14  C6   C  0  1  N  N  S  42.068   0.396  -14.782  -2.013  -0.501   0.570  C14  XM2   6  
XM2  C15  C7   C  0  1  N  N  N  42.075   0.145  -13.304  -3.282   0.149   1.058  C15  XM2   7  
XM2  C16  C8   C  0  1  N  N  N  42.061   7.657  -14.656   0.644   5.007   0.028  C16  XM2   8  
XM2  C17  C9   C  0  1  N  N  S  40.754  -0.803  -11.428  -5.712   0.256   1.200  C17  XM2   9  
XM2  C18  C10  C  0  1  Y  N  N  43.156  -0.605  -16.856  -0.738  -2.626   0.503  C18  XM2  10  
XM2  C19  C11  C  0  1  N  N  N  39.717  -0.015  -10.623  -6.860  -0.089   0.249  C19  XM2  11  
XM2  C2   C12  C  0  1  Y  N  N  45.309   7.915  -17.701   9.158   0.191  -1.417  C2   XM2  12  
XM2  C20  C13  C  0  1  N  N  S  40.067   1.470  -10.696  -6.589   0.533  -1.123  C20  XM2  13  
XM2  C21  C14  C  0  1  N  N  N  41.284   1.785   -9.840  -7.751   0.224  -2.096  C21  XM2  14  
XM2  C22  C15  C  0  1  N  N  N  40.852   2.886   -8.879  -7.240  -1.051  -2.803  C22  XM2  15  
XM2  C23  C16  C  0  1  Y  N  N  42.231   0.069  -17.637   0.476  -2.575   1.161  C23  XM2  16  
XM2  C24  C17  C  0  1  N  N  N  38.979   2.331  -10.129  -5.383  -0.115  -1.768  C24  XM2  17  
XM2  C25  C18  C  0  1  Y  N  N  42.361   0.004  -19.016   1.582  -3.206   0.623  C25  XM2  18  
XM2  C26  C19  C  0  1  Y  N  N  43.391  -0.727  -19.600   1.474  -3.888  -0.574  C26  XM2  19  
XM2  C28  C20  C  0  1  Y  N  N  44.314  -1.405  -18.829   0.259  -3.940  -1.233  C28  XM2  20  
XM2  C29  C21  C  0  1  Y  N  N  44.177  -1.334  -17.457  -0.848  -3.314  -0.692  C29  XM2  21  
XM2  C3   C22  C  0  1  Y  N  N  44.175   7.147  -17.933   8.118   0.519  -0.567  C3   XM2  22  
XM2  C30  C23  C  0  1  N  N  R  42.767   4.921  -13.506   1.387   2.401   0.820  C30  XM2  23  
XM2  C31  C24  C  0  1  N  N  N  43.421   4.050  -12.452   2.646   3.087   1.352  C31  XM2  24  
XM2  C32  C25  C  0  1  N  N  N  40.448  -2.300  -11.559  -6.042  -0.258   2.603  C32  XM2  25  
XM2  C34  C26  C  0  1  N  N  N  43.087  -0.583  -15.348  -1.943  -1.938   1.089  C34  XM2  26  
XM2  C4   C27  C  0  1  Y  N  N  43.071   7.688  -18.578   7.378  -0.479   0.038  C4   XM2  27  
XM2  C5   C28  C  0  1  Y  N  N  43.107   9.002  -18.988   7.677  -1.806  -0.208  C5   XM2  28  
XM2  C6   C29  C  0  1  Y  N  N  44.244   9.764  -18.760   8.713  -2.135  -1.062  C6   XM2  29  
XM2  C7   C30  C  0  1  N  N  N  41.846   6.842  -18.835   6.245  -0.121   0.965  C7   XM2  30  
XM2  C8   C31  C  0  1  N  N  N  43.034   7.368  -13.533   0.258   3.773  -0.789  C8   XM2  31  
XM2  C9   C32  C  0  1  N  N  N  42.114   5.276  -16.906   3.899   0.313   0.888  C9   XM2  32  
XM2  N10  N1   N  0  1  N  N  N  41.742   4.966  -15.678   2.723   0.436   0.241  N10  XM2  33  
XM2  N13  N2   N  0  1  N  N  N  42.440   1.758  -15.129  -0.858   0.253   1.064  N13  XM2  34  
XM2  N16  N3   N  0  1  N  N  N  40.912  -0.129  -12.718  -4.478  -0.376   0.726  N16  XM2  35  
XM2  N23  N4   N  0  1  N  N  N  39.445   3.104   -9.148  -5.777  -0.992  -2.708  N23  XM2  36  
XM2  O26  O1   O  0  1  N  N  N  37.838   2.285  -10.517  -4.229   0.124  -1.481  O26  XM2  37  
XM2  O29  O2   O  0  1  N  N  N  43.044   4.739  -17.456   3.953   0.488   2.089  O29  XM2  38  
XM2  O32  O3   O  0  1  N  N  N  43.571   6.072  -13.748   1.210   2.732  -0.559  O32  XM2  39  
XM2  O33  O4   O  0  1  N  N  N  40.965   2.773  -13.796   0.384  -0.382  -0.661  O33  XM2  40  
XM2  O34  O5   O  0  1  N  N  N  40.333  -2.992  -10.315  -6.331  -1.656   2.542  O34  XM2  41  
XM2  O38  O6   O  0  1  N  N  N  43.129   0.188  -12.701  -3.227   1.143   1.750  O38  XM2  42  
XM2  O8   O7   O  0  1  N  N  N  41.370   6.300  -17.611   5.014  -0.005   0.203  O8   XM2  43  
XM2  H1   H1   H  0  1  N  N  N  46.213   9.837  -17.916  10.269  -1.393  -2.326  H1   XM2  44  
XM2  H2   H2   H  0  1  N  N  N  44.847   8.190  -12.698  -1.853   4.099  -0.514  H2   XM2  45  
XM2  H3   H3   H  0  1  N  N  N  44.687   8.385  -14.477  -1.420   2.434  -0.969  H3   XM2  46  
XM2  H4   H4   H  0  1  N  N  N  43.713   9.410  -13.369  -1.115   3.012   0.687  H4   XM2  47  
XM2  H5   H5   H  0  1  N  N  N  43.548   3.991  -15.273   1.631   0.629   2.021  H5   XM2  48  
XM2  H6   H6   H  0  1  N  N  N  43.033   7.163  -11.395   1.234   4.470  -2.579  H6   XM2  49  
XM2  H7   H7   H  0  1  N  N  N  41.858   8.361  -12.036  -0.032   3.251  -2.859  H7   XM2  50  
XM2  H8   H8   H  0  1  N  N  N  41.531   6.603  -12.204  -0.482   4.924  -2.453  H8   XM2  51  
XM2  H9   H9   H  0  1  N  N  N  41.074   0.159  -15.190  -2.004  -0.507  -0.520  H9   XM2  52  
XM2  H10  H10  H  0  1  N  N  N  41.627   8.658  -14.517   0.579   4.774   1.091  H10  XM2  53  
XM2  H11  H11  H  0  1  N  N  N  42.591   7.618  -15.619   1.665   5.300  -0.217  H11  XM2  54  
XM2  H12  H12  H  0  1  N  N  N  41.258   6.905  -14.648  -0.036   5.826  -0.207  H12  XM2  55  
XM2  H13  H13  H  0  1  N  N  N  41.709  -0.719  -10.888  -5.578   1.337   1.231  H13  XM2  56  
XM2  H14  H14  H  0  1  N  N  N  38.715  -0.181  -11.047  -6.936  -1.171   0.148  H14  XM2  57  
XM2  H15  H15  H  0  1  N  N  N  39.731  -0.348   -9.575  -7.794   0.306   0.648  H15  XM2  58  
XM2  H16  H16  H  0  1  N  N  N  46.164   7.481  -17.204   9.736   0.971  -1.889  H16  XM2  59  
XM2  H17  H17  H  0  1  N  N  N  40.265   1.752  -11.741  -6.441   1.609  -1.031  H17  XM2  60  
XM2  H18  H18  H  0  1  N  N  N  41.599   0.892   -9.280  -8.673   0.025  -1.551  H18  XM2  61  
XM2  H19  H19  H  0  1  N  N  N  42.115   2.134  -10.471  -7.888   1.037  -2.809  H19  XM2  62  
XM2  H20  H20  H  0  1  N  N  N  40.999   2.566   -7.837  -7.615  -1.939  -2.295  H20  XM2  63  
XM2  H21  H21  H  0  1  N  N  N  41.428   0.631  -17.183   0.561  -2.042   2.097  H21  XM2  64  
XM2  H22  H22  H  0  1  N  N  N  41.655   0.527  -19.644   2.531  -3.165   1.137  H22  XM2  65  
XM2  H23  H23  H  0  1  N  N  N  43.470  -0.765  -20.676   2.338  -4.380  -0.996  H23  XM2  66  
XM2  H24  H24  H  0  1  N  N  N  45.114  -1.971  -19.283   0.175  -4.473  -2.169  H24  XM2  67  
XM2  H25  H25  H  0  1  N  N  N  44.883  -1.860  -16.832  -1.796  -3.354  -1.206  H25  XM2  68  
XM2  H26  H26  H  0  1  N  N  N  44.152   6.117  -17.608   7.884   1.556  -0.376  H26  XM2  69  
XM2  H27  H27  H  0  1  N  N  N  41.780   5.233  -13.133   0.521   2.739   1.389  H27  XM2  70  
XM2  H28  H28  H  0  1  N  N  N  43.552   4.630  -11.526   3.495   2.832   0.716  H28  XM2  71  
XM2  H29  H29  H  0  1  N  N  N  42.783   3.177  -12.251   2.501   4.167   1.347  H29  XM2  72  
XM2  H30  H30  H  0  1  N  N  N  44.403   3.711  -12.814   2.841   2.751   2.370  H30  XM2  73  
XM2  H31  H31  H  0  1  N  N  N  39.498  -2.410  -12.103  -5.188  -0.092   3.260  H31  XM2  74  
XM2  H32  H32  H  0  1  N  N  N  41.258  -2.767  -12.138  -6.909   0.276   2.992  H32  XM2  75  
XM2  H33  H33  H  0  1  N  N  N  42.824  -1.593  -15.000  -1.863  -1.928   2.176  H33  XM2  76  
XM2  H34  H34  H  0  1  N  N  N  44.080  -0.309  -14.962  -2.846  -2.474   0.797  H34  XM2  77  
XM2  H35  H35  H  0  1  N  N  N  42.253   9.438  -19.485   7.095  -2.586   0.261  H35  XM2  78  
XM2  H36  H36  H  0  1  N  N  N  44.274  10.789  -19.098   8.946  -3.172  -1.253  H36  XM2  79  
XM2  H37  H37  H  0  1  N  N  N  41.061   7.465  -19.289   6.133  -0.899   1.720  H37  XM2  80  
XM2  H38  H38  H  0  1  N  N  N  42.106   6.022  -19.521   6.461   0.830   1.452  H38  XM2  81  
XM2  H39  H39  H  0  1  N  N  N  40.862   5.300  -15.340   2.666   0.228  -0.705  H39  XM2  82  
XM2  H40  H40  H  0  1  N  N  N  43.119   1.897  -15.849  -0.935   0.786   1.870  H40  XM2  83  
XM2  H41  H41  H  0  1  N  N  N  40.079   0.148  -13.197  -4.522  -1.171   0.172  H41  XM2  84  
XM2  H42  H42  H  0  1  N  N  N  40.144  -3.909  -10.478  -6.549  -2.050   3.398  H42  XM2  85  
XM2  H43  H43  H  0  1  N  N  N  41.426   3.806   -9.065  -7.552  -1.054  -3.847  H43  XM2  86  
XM2  H44  H44  H  0  1  N  N  N  38.883   3.765   -8.650  -5.171  -1.518  -3.253  H44  XM2  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XM2  C26  C25  DOUB  Y  N   1  
XM2  C26  C28  SING  Y  N   2  
XM2  C25  C23  SING  Y  N   3  
XM2  C5   C6   DOUB  Y  N   4  
XM2  C5   C4   SING  Y  N   5  
XM2  C7   C4   SING  N  N   6  
XM2  C7   O8   SING  N  N   7  
XM2  C28  C29  DOUB  Y  N   8  
XM2  C6   C1   SING  Y  N   9  
XM2  C4   C3   DOUB  Y  N  10  
XM2  C1   C2   DOUB  Y  N  11  
XM2  C3   C2   SING  Y  N  12  
XM2  C23  C18  DOUB  Y  N  13  
XM2  O8   C9   SING  N  N  14  
XM2  C29  C18  SING  Y  N  15  
XM2  O29  C9   DOUB  N  N  16  
XM2  C9   N10  SING  N  N  17  
XM2  C18  C34  SING  N  N  18  
XM2  N10  C11  SING  N  N  19  
XM2  C34  C14  SING  N  N  20  
XM2  N13  C14  SING  N  N  21  
XM2  N13  C12  SING  N  N  22  
XM2  C11  C12  SING  N  N  23  
XM2  C11  C30  SING  N  N  24  
XM2  C14  C15  SING  N  N  25  
XM2  C16  C8   SING  N  N  26  
XM2  C12  O33  DOUB  N  N  27  
XM2  O32  C8   SING  N  N  28  
XM2  O32  C30  SING  N  N  29  
XM2  C8   C10  SING  N  N  30  
XM2  C8   C13  SING  N  N  31  
XM2  C30  C31  SING  N  N  32  
XM2  C15  N16  SING  N  N  33  
XM2  C15  O38  DOUB  N  N  34  
XM2  N16  C17  SING  N  N  35  
XM2  C32  C17  SING  N  N  36  
XM2  C32  O34  SING  N  N  37  
XM2  C17  C19  SING  N  N  38  
XM2  C20  C19  SING  N  N  39  
XM2  C20  C24  SING  N  N  40  
XM2  C20  C21  SING  N  N  41  
XM2  O26  C24  DOUB  N  N  42  
XM2  C24  N23  SING  N  N  43  
XM2  C21  C22  SING  N  N  44  
XM2  N23  C22  SING  N  N  45  
XM2  C1   H1   SING  N  N  46  
XM2  C10  H2   SING  N  N  47  
XM2  C10  H3   SING  N  N  48  
XM2  C10  H4   SING  N  N  49  
XM2  C11  H5   SING  N  N  50  
XM2  C13  H6   SING  N  N  51  
XM2  C13  H7   SING  N  N  52  
XM2  C13  H8   SING  N  N  53  
XM2  C14  H9   SING  N  N  54  
XM2  C16  H10  SING  N  N  55  
XM2  C16  H11  SING  N  N  56  
XM2  C16  H12  SING  N  N  57  
XM2  C17  H13  SING  N  N  58  
XM2  C19  H14  SING  N  N  59  
XM2  C19  H15  SING  N  N  60  
XM2  C2   H16  SING  N  N  61  
XM2  C20  H17  SING  N  N  62  
XM2  C21  H18  SING  N  N  63  
XM2  C21  H19  SING  N  N  64  
XM2  C22  H20  SING  N  N  65  
XM2  C23  H21  SING  N  N  66  
XM2  C25  H22  SING  N  N  67  
XM2  C26  H23  SING  N  N  68  
XM2  C28  H24  SING  N  N  69  
XM2  C29  H25  SING  N  N  70  
XM2  C3   H26  SING  N  N  71  
XM2  C30  H27  SING  N  N  72  
XM2  C31  H28  SING  N  N  73  
XM2  C31  H29  SING  N  N  74  
XM2  C31  H30  SING  N  N  75  
XM2  C32  H31  SING  N  N  76  
XM2  C32  H32  SING  N  N  77  
XM2  C34  H33  SING  N  N  78  
XM2  C34  H34  SING  N  N  79  
XM2  C5   H35  SING  N  N  80  
XM2  C6   H36  SING  N  N  81  
XM2  C7   H37  SING  N  N  82  
XM2  C7   H38  SING  N  N  83  
XM2  N10  H39  SING  N  N  84  
XM2  N13  H40  SING  N  N  85  
XM2  N16  H41  SING  N  N  86  
XM2  O34  H42  SING  N  N  87  
XM2  C22  H43  SING  N  N  88  
XM2  N23  H44  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XM2  SMILES            ACDLabs               12.01  "c1ccc(cc1)COC(NC(C(=O)NC(C(NC(CC2C(NCC2)=O)CO)=O)Cc3ccccc3)C(C)OC(C)(C)C)=O"  
XM2  InChI             InChI                 1.03   "InChI=1S/C32H44N4O7/c1-21(43-32(2,3)4)27(36-31(41)42-20-23-13-9-6-10-14-23)30(40)35-26(17-22-11-7-5-8-12-22)29(39)34-25(19-37)18-24-15-16-33-28(24)38/h5-14,21,24-27,37H,15-20H2,1-4H3,(H,33,38)(H,34,39)(H,35,40)(H,36,41)/t21-,24+,25+,26+,27+/m1/s1"  
XM2  InChIKey          InChI                 1.03   QJOPPFBQFHKESK-FFXRMZKPSA-N  
XM2  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O"  
XM2  SMILES            CACTVS                3.385  "C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CO)C[CH]3CCNC3=O"  
XM2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]([C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCc3ccccc3)OC(C)(C)C"  
XM2  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(C(=O)NC(Cc1ccccc1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCc3ccccc3)OC(C)(C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XM2  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-phenylalaninamide"  
XM2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(phenylmethyl) ~{N}-[(2~{S},3~{R})-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]amino]butan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XM2  "Create component"  2020-08-13  RCSB  
XM2  "Initial release"   2020-12-23  RCSB  
##
