data_Y62
# 
_chem_comp.id                                    Y62 
_chem_comp.name                                  "2-chloro-N-(5-cyanopyridin-2-yl)-5-nitrobenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H7 Cl N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-05 
_chem_comp.pdbx_modified_date                    2024-04-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y62 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FKG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y62 C14 C1  C  0  1 Y N N N N N -4.585 4.696  9.997  -2.820 -1.817 -0.029 C14 Y62 1  
Y62 C13 C2  C  0  1 Y N N N N N -4.716 5.313  8.772  -4.198 -1.787 0.030  C13 Y62 2  
Y62 C12 C3  C  0  1 Y N N N N N -5.970 5.741  8.359  -4.838 -0.539 0.032  C12 Y62 3  
Y62 C15 C4  C  0  1 N N N N N N -6.156 6.391  7.090  -6.266 -0.455 0.092  C15 Y62 4  
Y62 C11 C5  C  0  1 Y N N N N N -7.050 5.535  9.220  -4.062 0.620  -0.025 C11 Y62 5  
Y62 C01 C6  C  0  1 Y N N N N N -5.358 2.000  14.114 2.123  -0.738 -0.030 C01 Y62 6  
Y62 C02 C7  C  0  1 Y N N N N N -5.002 1.330  15.264 3.501  -0.759 0.022  C02 Y62 7  
Y62 C03 C8  C  0  1 Y N N N N N -5.577 1.603  16.482 4.213  0.426  0.074  C03 Y62 8  
Y62 C04 C9  C  0  1 Y N N N N N -6.562 2.570  16.537 3.550  1.640  0.073  C04 Y62 9  
Y62 C05 C10 C  0  1 Y N N N N N -6.939 3.238  15.381 2.170  1.676  0.021  C05 Y62 10 
Y62 C06 C11 C  0  1 Y N N N N N -6.378 2.924  14.145 1.446  0.482  -0.031 C06 Y62 11 
Y62 C07 C12 C  0  1 N N N N N N -6.736 3.674  12.895 -0.030 0.512  -0.087 C07 Y62 12 
Y62 C09 C13 C  0  1 Y N N N N N -5.721 4.523  10.784 -2.115 -0.618 -0.083 C09 Y62 13 
Y62 N08 N1  N  0  1 N N N N N N -5.695 3.901  12.042 -0.726 -0.641 -0.137 N08 Y62 14 
Y62 N10 N2  N  0  1 Y N N N N N -6.935 4.941  10.403 -2.749 0.546  -0.079 N10 Y62 15 
Y62 N16 N3  N  0  1 N N N N N N -6.303 6.912  6.085  -7.399 -0.388 0.139  N16 Y62 16 
Y62 N18 N4  N  1  1 N N N N N N -3.955 0.309  15.190 4.220  -2.053 0.023  N18 Y62 17 
Y62 O17 O1  O  0  1 N N N N N N -7.903 3.965  12.648 -0.617 1.577  -0.088 O17 Y62 18 
Y62 O19 O2  O  -1 1 N N N N N N -3.636 -0.270 16.218 3.595  -3.097 -0.022 O19 Y62 19 
Y62 O20 O3  O  0  1 N N N N N N -3.452 0.076  14.101 5.437  -2.073 0.069  O20 Y62 20 
Y62 H1  H1  H  0  1 N N N N N N -3.620 4.353  10.340 -2.294 -2.760 -0.028 H1  Y62 21 
Y62 H2  H2  H  0  1 N N N N N N -3.853 5.462  8.140  -4.770 -2.702 0.072  H2  Y62 22 
Y62 H3  H3  H  0  1 N N N N N N -8.027 5.875  8.909  -4.543 1.587  -0.024 H3  Y62 23 
Y62 H4  H4  H  0  1 N N N N N N -4.837 1.801  13.189 1.569  -1.665 -0.074 H4  Y62 24 
Y62 H5  H5  H  0  1 N N N N N N -5.267 1.076  17.372 5.292  0.403  0.115  H5  Y62 25 
Y62 H6  H6  H  0  1 N N N N N N -7.037 2.805  17.478 4.112  2.561  0.114  H6  Y62 26 
Y62 H8  H8  H  0  1 N N N N N N -4.799 3.584  12.353 -0.258 -1.487 -0.211 H8  Y62 27 
Y62 CL1 CL1 CL 0  0 N Y N N N N -8.080 4.583  15.498 1.339  3.200  0.021  CL1 Y62 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y62 N16 C15 TRIP N N 1  
Y62 C15 C12 SING N N 2  
Y62 C12 C13 DOUB Y N 3  
Y62 C12 C11 SING Y N 4  
Y62 C13 C14 SING Y N 5  
Y62 C11 N10 DOUB Y N 6  
Y62 C14 C09 DOUB Y N 7  
Y62 N10 C09 SING Y N 8  
Y62 C09 N08 SING N N 9  
Y62 N08 C07 SING N N 10 
Y62 O17 C07 DOUB N N 11 
Y62 C07 C06 SING N N 12 
Y62 O20 N18 DOUB N N 13 
Y62 C01 C06 DOUB Y N 14 
Y62 C01 C02 SING Y N 15 
Y62 C06 C05 SING Y N 16 
Y62 N18 C02 SING N N 17 
Y62 N18 O19 SING N N 18 
Y62 C02 C03 DOUB Y N 19 
Y62 C05 C04 DOUB Y N 20 
Y62 C03 C04 SING Y N 21 
Y62 C14 H1  SING N N 22 
Y62 C13 H2  SING N N 23 
Y62 C11 H3  SING N N 24 
Y62 C01 H4  SING N N 25 
Y62 C03 H5  SING N N 26 
Y62 C04 H6  SING N N 27 
Y62 N08 H8  SING N N 28 
Y62 C05 CL1 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y62 SMILES           ACDLabs              12.01 "O=C(Nc1ccc(cn1)C#N)c1cc(ccc1Cl)[N+]([O-])=O"                                                            
Y62 InChI            InChI                1.06  "InChI=1S/C13H7ClN4O3/c14-11-3-2-9(18(20)21)5-10(11)13(19)17-12-4-1-8(6-15)7-16-12/h1-5,7H,(H,16,17,19)" 
Y62 InChIKey         InChI                1.06  WLQNMMZWQLFUOW-UHFFFAOYSA-N                                                                              
Y62 SMILES_CANONICAL CACTVS               3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2ccc(cn2)C#N"                                                          
Y62 SMILES           CACTVS               3.385 "[O-][N+](=O)c1ccc(Cl)c(c1)C(=O)Nc2ccc(cn2)C#N"                                                          
Y62 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2ccc(cn2)C#N)Cl"                                                          
Y62 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)Nc2ccc(cn2)C#N)Cl"                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y62 "SYSTEMATIC NAME" ACDLabs              12.01 "2-chloro-N-(5-cyanopyridin-2-yl)-5-nitrobenzamide"        
Y62 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-chloranyl-~{N}-(5-cyanopyridin-2-yl)-5-nitro-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y62 "Create component" 2023-01-05 RCSB 
Y62 "Initial release"  2024-04-17 RCSB 
# 
