data_9R4
# 
_chem_comp.id                                    9R4 
_chem_comp.name                                  D-gamma-glutamyl-2-methyl-L-alanine 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H16 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-01 
_chem_comp.pdbx_modified_date                    2024-04-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        232.234 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9R4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VWX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9R4 N   N   N 0 1 N N N Y Y N 86.196 -2.657 40.218 3.362  1.890  0.289  N   9R4 1  
9R4 CA  CA  C 0 1 N N S Y N N 85.036 -3.034 39.438 3.290  0.612  -0.432 CA  9R4 2  
9R4 C   C   C 0 1 N N N Y N Y 85.458 -3.404 38.006 4.517  -0.208 -0.124 C   9R4 3  
9R4 O   O   O 0 1 N N N Y N Y 85.490 -4.552 37.645 5.174  0.034  0.860  O   9R4 4  
9R4 CB  CB  C 0 1 N N N N N N 84.213 -4.163 40.066 2.041  -0.153 0.010  CB  9R4 5  
9R4 CG  CG  C 0 1 N N N N N N 83.027 -4.612 39.153 0.792  0.622  -0.414 CG  9R4 6  
9R4 CD  CD  C 0 1 N N N N N N 82.059 -3.473 38.730 -0.438 -0.132 0.021  CD  9R4 7  
9R4 NE  NE  N 0 1 N N N N N N 80.666 -3.478 39.199 -1.663 0.364  -0.246 NE  9R4 8  
9R4 CZ  CZ  C 0 1 N N N N N N 79.724 -2.412 38.808 -2.858 -0.368 0.177  CZ  9R4 9  
9R4 C01 C01 C 0 1 N N N N N N 79.526 -2.425 37.284 -2.868 -1.751 -0.479 C01 9R4 10 
9R4 C02 C02 C 0 1 N N N N N N 80.283 -1.050 39.235 -2.848 -0.526 1.699  C02 9R4 11 
9R4 CH  CH  C 0 1 N N N N N N 78.362 -2.637 39.504 -4.089 0.394  -0.241 CH  9R4 12 
9R4 O01 O01 O 0 1 N N N N N N 78.208 -3.608 40.296 -4.082 1.737  -0.230 O01 9R4 13 
9R4 O02 O02 O 0 1 N N N N N N 77.399 -1.846 39.281 -5.082 -0.202 -0.584 O02 9R4 14 
9R4 O03 O03 O 0 1 N N N N N N 82.435 -2.607 38.027 -0.327 -1.185 0.613  O03 9R4 15 
9R4 H   H1  H 0 1 N N N Y Y N 85.911 -2.419 41.146 2.583  2.485  0.049  H1  9R4 16 
9R4 H2  H2  H 0 1 N Y N Y Y N 86.837 -3.423 40.253 3.410  1.741  1.285  H2  9R4 17 
9R4 HA  H4  H 0 1 N N N Y N N 84.376 -2.157 39.362 3.240  0.802  -1.504 H4  9R4 18 
9R4 H6  H6  H 0 1 N N N N N N 83.807 -3.813 41.026 2.034  -1.138 -0.457 H6  9R4 19 
9R4 H7  H7  H 0 1 N N N N N N 84.872 -5.026 40.240 2.049  -0.265 1.094  H7  9R4 20 
9R4 H8  H8  H 0 1 N N N N N N 82.445 -5.370 39.697 0.799  1.606  0.053  H8  9R4 21 
9R4 H9  H9  H 0 1 N N N N N N 83.449 -5.059 38.240 0.785  0.734  -1.498 H9  9R4 22 
9R4 H10 H10 H 0 1 N N N N N N 80.351 -4.217 39.794 -1.752 1.206  -0.719 H10 9R4 23 
9R4 H11 H11 H 0 1 N N N N N N 78.823 -1.629 36.998 -1.978 -2.303 -0.177 H11 9R4 24 
9R4 H12 H12 H 0 1 N N N N N N 80.493 -2.256 36.787 -3.758 -2.296 -0.164 H12 9R4 25 
9R4 H13 H13 H 0 1 N N N N N N 79.121 -3.400 36.975 -2.876 -1.639 -1.563 H13 9R4 26 
9R4 H14 H14 H 0 1 N N N N N N 80.426 -1.037 40.326 -2.841 0.459  2.166  H14 9R4 27 
9R4 H15 H15 H 0 1 N N N N N N 81.248 -0.877 38.737 -3.738 -1.071 2.014  H15 9R4 28 
9R4 H16 H16 H 0 1 N N N N N N 79.576 -0.258 38.949 -1.958 -1.078 2.001  H16 9R4 29 
9R4 H17 H17 H 0 1 N N N N N N 77.321 -3.602 40.636 -4.895 2.182  -0.507 H17 9R4 30 
9R4 OXT O1  O 0 1 N Y N Y N Y 85.785 -2.383 37.220 4.879  -1.207 -0.945 O1  9R4 31 
9R4 HXT H3  H 0 1 N Y N Y N Y 86.036 -2.710 36.364 5.673  -1.704 -0.706 H3  9R4 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9R4 C01 CZ  SING N N 1  
9R4 O   C   DOUB N N 2  
9R4 C   CA  SING N N 3  
9R4 O03 CD  DOUB N N 4  
9R4 CD  CG  SING N N 5  
9R4 CD  NE  SING N N 6  
9R4 CZ  NE  SING N N 7  
9R4 CZ  C02 SING N N 8  
9R4 CZ  CH  SING N N 9  
9R4 CG  CB  SING N N 10 
9R4 O02 CH  DOUB N N 11 
9R4 CA  CB  SING N N 12 
9R4 CA  N   SING N N 13 
9R4 CH  O01 SING N N 14 
9R4 N   H   SING N N 15 
9R4 N   H2  SING N N 16 
9R4 CA  HA  SING N N 17 
9R4 CB  H6  SING N N 18 
9R4 CB  H7  SING N N 19 
9R4 CG  H8  SING N N 20 
9R4 CG  H9  SING N N 21 
9R4 NE  H10 SING N N 22 
9R4 C01 H11 SING N N 23 
9R4 C01 H12 SING N N 24 
9R4 C01 H13 SING N N 25 
9R4 C02 H14 SING N N 26 
9R4 C02 H15 SING N N 27 
9R4 C02 H16 SING N N 28 
9R4 O01 H17 SING N N 29 
9R4 C   OXT SING N N 30 
9R4 OXT HXT SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9R4 SMILES           ACDLabs              12.01 "NC(CCC(NC(C)(C(O)=O)C)=O)C(O)=O"                                                                                     
9R4 InChI            InChI                1.03  "InChI=1S/C9H16N2O5/c1-9(2,8(15)16)11-6(12)4-3-5(10)7(13)14/h5H,3-4,10H2,1-2H3,(H,11,12)(H,13,14)(H,15,16)/t5-/m1/s1" 
9R4 InChIKey         InChI                1.03  SWPZYVBHCFOANH-RXMQYKEDSA-N                                                                                           
9R4 SMILES_CANONICAL CACTVS               3.385 "CC(C)(NC(=O)CC[C@@H](N)C(O)=O)C(O)=O"                                                                                
9R4 SMILES           CACTVS               3.385 "CC(C)(NC(=O)CC[CH](N)C(O)=O)C(O)=O"                                                                                  
9R4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)O)NC(=O)CC[C@H](C(=O)O)N"                                                                                 
9R4 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(C(=O)O)NC(=O)CCC(C(=O)O)N"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9R4 "SYSTEMATIC NAME" ACDLabs              12.01 D-gamma-glutamyl-2-methyl-L-alanine                                                                          
9R4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-azanyl-5-[(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)amino]-5-oxidanylidene-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9R4 "Create component"   2017-06-01 RCSB 
9R4 "Initial release"    2017-11-15 RCSB 
9R4 "Modify backbone"    2023-11-03 PDBE 
9R4 "Other modification" 2024-04-30 PDBE 
# 
