data_3V5
#

_chem_comp.id                                   3V5
_chem_comp.name                                 "(3S,5S)-3-({[(aminomethyl)amino]methyl}sulfanyl)-5-[(2S)-1,3-dioxobutan-2-yl]-L-proline"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H19 N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "olivanic acid analog, open from"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-11-05
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       289.351
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3V5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4QTF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3V5  OAF  OAF  O  0  1  N  N  N  22.065  25.094  41.073  -0.319  -3.125   0.676  OAF  3V5   1  
3V5  CAS  CAS  C  0  1  N  N  N  22.097  23.892  41.334   0.257  -2.592  -0.243  CAS  3V5   2  
3V5  OAH  OAH  O  0  1  N  N  N  21.135  23.255  41.745   1.258  -3.231  -0.869  OAH  3V5   3  
3V5  CAX  CAX  C  0  1  N  N  R  23.401  23.209  41.204  -0.152  -1.212  -0.690  CAX  3V5   4  
3V5  CAW  CAW  C  0  1  N  N  S  23.313  21.866  40.487   0.715  -0.151   0.021  CAW  3V5   5  
3V5  SAQ  SAQ  S  0  1  N  N  N  24.447  21.939  39.130   2.043   0.428  -1.070  SAQ  3V5   6  
3V5  CAK  CAK  C  0  1  N  N  N  23.817  21.386  37.581   3.025   1.500   0.015  CAK  3V5   7  
3V5  NAN  NAN  N  0  1  N  N  N  23.893  22.411  36.564   3.815   0.673   0.937  NAN  3V5   8  
3V5  CAJ  CAJ  C  0  1  N  N  N  24.654  23.634  36.739   5.171   0.454   0.418  CAJ  3V5   9  
3V5  NAB  NAB  N  0  1  N  N  N  23.899  24.604  37.496   6.082   1.453   0.993  NAB  3V5  10  
3V5  CAM  CAM  C  0  1  N  N  N  23.635  20.822  41.556  -0.296   0.990   0.308  CAM  3V5  11  
3V5  NAO  NAO  N  0  1  N  N  N  23.813  22.890  42.523  -1.554  -0.956  -0.310  NAO  3V5  12  
3V5  CAV  CAV  C  0  1  N  N  S  23.153  21.639  42.726  -1.588   0.194   0.618  CAV  3V5  13  
3V5  CAY  CAY  C  0  1  N  N  S  23.068  21.247  44.175  -2.822   1.058   0.350  CAY  3V5  14  
3V5  CAR  CAR  C  0  1  N  N  N  24.119  20.389  44.868  -4.060   0.309   0.773  CAR  3V5  15  
3V5  CAA  CAA  C  0  1  N  N  N  25.517  20.927  44.981  -5.306   1.066   1.153  CAA  3V5  16  
3V5  OAE  OAE  O  0  1  N  N  N  23.843  19.364  45.448  -4.053  -0.899   0.806  OAE  3V5  17  
3V5  CAT  CAT  C  0  1  N  N  N  21.621  20.920  44.267  -2.905   1.375  -1.120  CAT  3V5  18  
3V5  OAG  OAG  O  0  1  N  N  N  20.980  21.629  44.990  -2.881   2.523  -1.493  OAG  3V5  19  
3V5  H1   H1   H  0  1  N  N  N  20.384  23.831  41.825   1.481  -4.116  -0.549  H1   3V5  20  
3V5  H2   H2   H  0  1  N  N  N  24.131  23.858  40.698  -0.038  -1.123  -1.770  H2   3V5  21  
3V5  H3   H3   H  0  1  N  N  N  22.305  21.707  40.076   1.123  -0.548   0.951  H3   3V5  22  
3V5  H4   H4   H  0  1  N  N  N  22.765  21.093  37.711   3.695   2.112  -0.588  H4   3V5  23  
3V5  H5   H5   H  0  1  N  N  N  24.402  20.515  37.251   2.358   2.146   0.587  H5   3V5  24  
3V5  H6   H6   H  0  1  N  N  N  22.951  22.694  36.386   3.352  -0.205   1.122  H6   3V5  25  
3V5  H8   H8   H  0  1  N  N  N  25.587  23.405  37.275   5.509  -0.545   0.691  H8   3V5  26  
3V5  H9   H9   H  0  1  N  N  N  24.893  24.054  35.751   5.165   0.551  -0.668  H9   3V5  27  
3V5  H10  H10  H  0  1  N  N  N  24.441  25.438  37.605   6.057   1.427   2.001  H10  3V5  28  
3V5  H11  H11  H  0  1  N  N  N  23.051  24.819  37.011   7.023   1.324   0.651  H11  3V5  29  
3V5  H13  H13  H  0  1  N  N  N  23.065  19.890  41.425   0.016   1.579   1.171  H13  3V5  30  
3V5  H14  H14  H  0  1  N  N  N  24.709  20.590  41.613  -0.428   1.624  -0.568  H14  3V5  31  
3V5  H15  H15  H  0  1  N  N  N  24.807  22.794  42.583  -2.122  -0.781  -1.125  H15  3V5  32  
3V5  H17  H17  H  0  1  N  N  N  22.106  21.851  42.465  -1.582  -0.152   1.651  H17  3V5  33  
3V5  H18  H18  H  0  1  N  N  N  23.146  22.210  44.702  -2.747   1.985   0.919  H18  3V5  34  
3V5  H19  H19  H  0  1  N  N  N  26.117  20.260  45.618  -5.922   1.220   0.268  H19  3V5  35  
3V5  H20  H20  H  0  1  N  N  N  25.970  20.983  43.980  -5.867   0.494   1.892  H20  3V5  36  
3V5  H21  H21  H  0  1  N  N  N  25.488  21.932  45.427  -5.029   2.032   1.576  H21  3V5  37  
3V5  H22  H22  H  0  1  N  N  N  21.178  20.101  43.720  -2.984   0.575  -1.842  H22  3V5  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3V5  NAN  CAJ  SING  N  N   1  
3V5  NAN  CAK  SING  N  N   2  
3V5  CAJ  NAB  SING  N  N   3  
3V5  CAK  SAQ  SING  N  N   4  
3V5  SAQ  CAW  SING  N  N   5  
3V5  CAW  CAX  SING  N  N   6  
3V5  CAW  CAM  SING  N  N   7  
3V5  OAF  CAS  DOUB  N  N   8  
3V5  CAX  CAS  SING  N  N   9  
3V5  CAX  NAO  SING  N  N  10  
3V5  CAS  OAH  SING  N  N  11  
3V5  CAM  CAV  SING  N  N  12  
3V5  NAO  CAV  SING  N  N  13  
3V5  CAV  CAY  SING  N  N  14  
3V5  CAY  CAT  SING  N  N  15  
3V5  CAY  CAR  SING  N  N  16  
3V5  CAT  OAG  DOUB  N  N  17  
3V5  CAR  CAA  SING  N  N  18  
3V5  CAR  OAE  DOUB  N  N  19  
3V5  OAH  H1   SING  N  N  20  
3V5  CAX  H2   SING  N  N  21  
3V5  CAW  H3   SING  N  N  22  
3V5  CAK  H4   SING  N  N  23  
3V5  CAK  H5   SING  N  N  24  
3V5  NAN  H6   SING  N  N  25  
3V5  CAJ  H8   SING  N  N  26  
3V5  CAJ  H9   SING  N  N  27  
3V5  NAB  H10  SING  N  N  28  
3V5  NAB  H11  SING  N  N  29  
3V5  CAM  H13  SING  N  N  30  
3V5  CAM  H14  SING  N  N  31  
3V5  NAO  H15  SING  N  N  32  
3V5  CAV  H17  SING  N  N  33  
3V5  CAY  H18  SING  N  N  34  
3V5  CAA  H19  SING  N  N  35  
3V5  CAA  H20  SING  N  N  36  
3V5  CAA  H21  SING  N  N  37  
3V5  CAT  H22  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3V5  SMILES            ACDLabs               12.01  "O=C(C(C=O)C1NC(C(=O)O)C(SCNCN)C1)C"  
3V5  InChI             InChI                 1.03   "InChI=1S/C11H19N3O4S/c1-6(16)7(3-15)8-2-9(19-5-13-4-12)10(14-8)11(17)18/h3,7-10,13-14H,2,4-5,12H2,1H3,(H,17,18)/t7-,8-,9-,10-/m0/s1"  
3V5  InChIKey          InChI                 1.03   SKDDBJCIWUNJNL-XKNYDFJKSA-N  
3V5  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)[C@H](C=O)[C@@H]1C[C@H](SCNCN)[C@H](N1)C(O)=O"  
3V5  SMILES            CACTVS                3.385  "CC(=O)[CH](C=O)[CH]1C[CH](SCNCN)[CH](N1)C(O)=O"  
3V5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC(=O)[C@H](C=O)[C@@H]1C[C@@H]([C@H](N1)C(=O)O)SCNCN"  
3V5  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(=O)C(C=O)C1CC(C(N1)C(=O)O)SCNCN"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3V5  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3S,5S)-3-({[(aminomethyl)amino]methyl}sulfanyl)-5-[(2S)-1,3-dioxobutan-2-yl]-L-proline"  
3V5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3S,5S)-3-[(aminomethylamino)methylsulfanyl]-5-[(2S)-1,3-bis(oxidanylidene)butan-2-yl]pyrrolidine-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3V5  "Create component"  2014-11-05  RCSB  
3V5  "Initial release"   2015-07-29  RCSB  
3V5  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3V5
_pdbx_chem_comp_synonyms.name        "olivanic acid analog, open from"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
