data_LN5
#

_chem_comp.id                                   LN5
_chem_comp.name                                 "N5-(1-iminopropyl)-L-ornithine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H17 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2S)-2-azanyl-5-(propanimidoylamino)pentanoic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       187.239
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LN5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I4A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LN5  CT1   CT1   C  0  1  N  N  N  2.386  -22.078  -14.350  -5.944   0.134   0.064  CT1   LN5   1  
LN5  CH1   CH1   C  0  1  N  N  N  1.529  -21.929  -15.597  -4.708  -0.623  -0.427  CH1   LN5   2  
LN5  CZ    CZ    C  0  1  N  N  N  1.139  -20.498  -15.908  -3.465   0.099   0.025  CZ    LN5   3  
LN5  NH2   NH2   N  0  1  N  N  N  1.442  -19.669  -14.796  -3.564   1.185   0.719  NH2   LN5   4  
LN5  NE    NE    N  0  1  N  N  N  2.019  -19.885  -16.899  -2.229  -0.396  -0.300  NE    LN5   5  
LN5  CD    CD    C  0  1  N  N  N  2.048  -20.462  -18.257  -1.020   0.305   0.140  CD    LN5   6  
LN5  CG    CG    C  0  1  N  N  N  2.875  -19.552  -19.190   0.215  -0.451  -0.352  CG    LN5   7  
LN5  CB    CB    C  0  1  N  N  N  2.878  -20.075  -20.656   1.478   0.281   0.107  CB    LN5   8  
LN5  CA    CA    C  0  1  N  N  S  3.625  -19.146  -21.626   2.714  -0.476  -0.385  CA    LN5   9  
LN5  C     C     C  0  1  N  N  N  5.128  -19.145  -21.340   3.953   0.309  -0.039  C     LN5  10  
LN5  OA2   OA2   O  0  1  N  N  N  5.834  -19.925  -22.018   4.612   0.003   0.927  OA2   LN5  11  
LN5  OA1   OA1   O  0  1  N  N  N  5.541  -18.346  -20.471   4.326   1.347  -0.805  OA1   LN5  12  
LN5  N     N     N  0  1  N  N  N  3.417  -19.588  -23.014   2.771  -1.793   0.263  N     LN5  13  
LN5  H1H2  H1H2  H  0  0  N  N  N  1.165  -18.745  -15.059  -2.763   1.650   1.010  H1H2  LN5  14  
LN5  H1T1  H1T1  H  0  0  N  N  N  3.448  -22.114  -14.636  -6.843  -0.388  -0.263  H1T1  LN5  15  
LN5  H2T1  H2T1  H  0  0  N  N  N  2.215  -21.220  -13.683  -5.929   0.185   1.153  H2T1  LN5  16  
LN5  H3T1  H3T1  H  0  0  N  N  N  2.115  -23.008  -13.828  -5.939   1.143  -0.347  H3T1  LN5  17  
LN5  H1H1  H1H1  H  0  0  N  N  N  2.101  -22.319  -16.452  -4.713  -1.632  -0.016  H1H1  LN5  18  
LN5  H2H1  H2H1  H  0  0  N  N  N  0.597  -22.484  -15.414  -4.723  -0.674  -1.516  H2H1  LN5  19  
LN5  HNE   HNE   H  0  1  N  N  N  2.586  -19.096  -16.664  -2.155  -1.211  -0.821  HNE   LN5  20  
LN5  H1D   H1D   H  0  1  N  N  N  2.507  -21.461  -18.220  -1.016   1.314  -0.272  H1D   LN5  21  
LN5  H2D   H2D   H  0  1  N  N  N  1.021  -20.542  -18.642  -1.006   0.356   1.228  H2D   LN5  22  
LN5  H1G   H1G   H  0  1  N  N  N  2.437  -18.543  -19.177   0.211  -1.461   0.059  H1G   LN5  23  
LN5  H2G   H2G   H  0  1  N  N  N  3.913  -19.543  -18.827   0.201  -0.503  -1.441  H2G   LN5  24  
LN5  H1B   H1B   H  0  1  N  N  N  3.372  -21.058  -20.671   1.482   1.290  -0.305  H1B   LN5  25  
LN5  H2B   H2B   H  0  1  N  N  N  1.831  -20.128  -20.990   1.492   0.332   1.196  H2B   LN5  26  
LN5  HA    HA    H  0  1  N  N  N  3.226  -18.130  -21.485   2.654  -0.605  -1.465  HA    LN5  27  
LN5  H15   H15   H  0  1  N  N  N  6.485  -18.417  -20.398   5.128   1.819  -0.543  H15   LN5  28  
LN5  H1N   H1N   H  0  1  N  N  N  3.370  -18.790  -23.615   2.826  -1.700   1.266  H1N   LN5  29  
LN5  H2N   H2N   H  0  1  N  N  N  4.178  -20.172  -23.295   1.982  -2.362  -0.004  H2N   LN5  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LN5  CH1  CT1   SING  N  N   1  
LN5  CZ   CH1   SING  N  N   2  
LN5  CZ   NH2   DOUB  N  N   3  
LN5  NH2  H1H2  SING  N  N   4  
LN5  NE   CZ    SING  N  N   5  
LN5  CD   NE    SING  N  N   6  
LN5  CG   CD    SING  N  N   7  
LN5  CB   CG    SING  N  N   8  
LN5  CA   C     SING  N  N   9  
LN5  CA   CB    SING  N  N  10  
LN5  C    OA1   SING  N  N  11  
LN5  OA2  C     DOUB  N  N  12  
LN5  N    CA    SING  N  N  13  
LN5  CT1  H1T1  SING  N  N  14  
LN5  CT1  H2T1  SING  N  N  15  
LN5  CT1  H3T1  SING  N  N  16  
LN5  CH1  H1H1  SING  N  N  17  
LN5  CH1  H2H1  SING  N  N  18  
LN5  NE   HNE   SING  N  N  19  
LN5  CD   H1D   SING  N  N  20  
LN5  CD   H2D   SING  N  N  21  
LN5  CG   H1G   SING  N  N  22  
LN5  CG   H2G   SING  N  N  23  
LN5  CB   H1B   SING  N  N  24  
LN5  CB   H2B   SING  N  N  25  
LN5  CA   HA    SING  N  N  26  
LN5  OA1  H15   SING  N  N  27  
LN5  N    H1N   SING  N  N  28  
LN5  N    H2N   SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LN5  SMILES            ACDLabs               10.04  "O=C(O)C(N)CCCNC(=[N@H])CC"  
LN5  SMILES_CANONICAL  CACTVS                3.341  "CCC(=N)NCCC[C@H](N)C(O)=O"  
LN5  SMILES            CACTVS                3.341  "CCC(=N)NCCC[CH](N)C(O)=O"  
LN5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(/CC)\NCCC[C@@H](C(=O)O)N"  
LN5  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(CC)NCCCC(C(=O)O)N"  
LN5  InChI             InChI                 1.03   "InChI=1S/C8H17N3O2/c1-2-7(10)11-5-3-4-6(9)8(12)13/h6H,2-5,9H2,1H3,(H2,10,11)(H,12,13)/t6-/m0/s1"  
LN5  InChIKey          InChI                 1.03   ZYIBCZWVLDODOL-LURJTMIESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LN5  "SYSTEMATIC NAME"  ACDLabs               10.04  "N~5~-[(1Z)-propanimidoyl]-L-ornithine"  
LN5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-5-(propanimidoylamino)pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LN5  "Create component"   2009-07-07  RCSB  
LN5  "Modify descriptor"  2011-06-04  RCSB  
LN5  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LN5
_pdbx_chem_comp_synonyms.name        "(2S)-2-azanyl-5-(propanimidoylamino)pentanoic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
