data_N65
# 
_chem_comp.id                                    N65 
_chem_comp.name                                  "(2~{S})-2-azanyl-6-[(~{E})-pentan-2-ylideneamino]hexanal" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H22 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-11-13 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        214.305 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     N65 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6TF8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N65 C4  C4  C 0 1 N N N N N N 2.983  23.570 -2.417 -3.476 -0.563 -0.234 C4  N65 1  
N65 C5  C5  C 0 1 N N N N N N 3.105  22.563 -3.571 -3.230 -0.486 -1.719 C5  N65 2  
N65 C3  C3  C 0 1 N N N N N N 1.669  24.341 -2.224 -4.837 -0.230 0.322  C3  N65 3  
N65 N   N   N 0 1 N N N Y Y N 8.602  19.068 1.240  4.010  -1.557 0.283  N   N65 4  
N65 CA  CA  C 0 1 N N S Y N N 8.254  19.974 0.144  3.622  -0.284 -0.338 CA  N65 5  
N65 C   C   C 0 1 N N N Y N Y 9.512  20.277 -0.662 4.674  0.757  -0.049 C   N65 6  
N65 O   O   O 0 1 N N N Y N Y 10.576 20.483 -0.026 5.439  0.602  0.874  O   N65 7  
N65 CB  CB  C 0 1 N N N N N N 7.674  21.283 0.686  2.280  0.175  0.235  CB  N65 8  
N65 CG  CG  C 0 1 N N N N N N 7.287  22.189 -0.486 1.188  -0.819 -0.166 CG  N65 9  
N65 CD  CD  C 0 1 N N N N N N 5.805  22.568 -0.387 -0.154 -0.360 0.407  CD  N65 10 
N65 CE  CE  C 0 1 N N N N N N 5.329  23.124 -1.738 -1.246 -1.355 0.006  CE  N65 11 
N65 NZ  NZ  N 0 1 N N N N N N 4.025  23.799 -1.595 -2.532 -0.915 0.554  NZ  N65 12 
N65 C1  C1  C 0 1 N N N N N N 0.647  26.333 -1.157 -6.521 1.588  0.641  C1  N65 13 
N65 C2  C2  C 0 1 N N N N N N 1.821  25.358 -1.087 -5.140 1.250  0.076  C2  N65 14 
N65 H1  H1  H 0 1 N N N N N N 4.106  22.108 -3.557 -4.117 -0.093 -2.214 H1  N65 15 
N65 H6  H2  H 0 1 N N N N N N 2.344  21.777 -3.454 -2.383 0.172  -1.913 H2  N65 16 
N65 H3  H3  H 0 1 N N N N N N 2.952  23.082 -4.528 -3.011 -1.483 -2.102 H3  N65 17 
N65 H4  H4  H 0 1 N N N N N N 1.417  24.870 -3.155 -5.591 -0.842 -0.172 H4  N65 18 
N65 H5  H5  H 0 1 N N N N N N 0.864  23.633 -1.975 -4.850 -0.430 1.394  H5  N65 19 
N65 H   H6  H 0 1 N N N Y Y N 7.783  18.862 1.776  4.101  -1.459 1.283  H6  N65 20 
N65 H2  H7  H 0 1 N Y N Y Y N 8.977  18.220 0.865  3.354  -2.288 0.050  H7  N65 21 
N65 HA  H9  H 0 1 N N N Y N N 7.511  19.498 -0.514 3.531  -0.418 -1.416 H9  N65 22 
N65 H11 H11 H 0 1 N N N N N N 8.427  21.789 1.308  2.346  0.224  1.321  H11 N65 23 
N65 H12 H12 H 0 1 N N N N N N 6.782  21.066 1.293  2.035  1.162  -0.159 H12 N65 24 
N65 H13 H13 H 0 1 N N N N N N 7.465  21.657 -1.432 1.122  -0.868 -1.253 H13 N65 25 
N65 H14 H14 H 0 1 N N N N N N 7.899  23.102 -0.458 1.433  -1.806 0.228  H14 N65 26 
N65 H15 H15 H 0 1 N N N N N N 5.673  23.334 0.392  -0.089 -0.312 1.493  H15 N65 27 
N65 H16 H16 H 0 1 N N N N N N 5.215  21.677 -0.129 -0.399 0.626  0.013  H16 N65 28 
N65 H17 H17 H 0 1 N N N N N N 5.230  22.295 -2.455 -1.312 -1.403 -1.081 H17 N65 29 
N65 H18 H18 H 0 1 N N N N N N 6.070  23.846 -2.112 -1.002 -2.341 0.400  H18 N65 30 
N65 H19 H19 H 0 1 N N N N N N 0.736  27.073 -0.348 -7.275 0.975  0.147  H19 N65 31 
N65 H20 H20 H 0 1 N N N N N N 0.656  26.849 -2.129 -6.535 1.388  1.712  H20 N65 32 
N65 H21 H21 H 0 1 N N N N N N -0.297 25.779 -1.045 -6.737 2.642  0.466  H21 N65 33 
N65 H22 H22 H 0 1 N N N N N N 1.815  24.837 -0.118 -4.386 1.862  0.570  H22 N65 34 
N65 H23 H23 H 0 1 N N N N N N 2.768  25.906 -1.202 -5.126 1.450  -0.995 H23 N65 35 
N65 OXT O1  O 0 1 N Y N Y N Y ?      ?      ?      4.760  1.855  -0.815 O1  N65 36 
N65 HXT H8  H 0 1 N Y N Y N Y ?      ?      ?      5.450  2.494  -0.591 H8  N65 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N65 C5  C4  SING N N 1  
N65 C4  C3  SING N N 2  
N65 C4  NZ  DOUB N N 3  
N65 C3  C2  SING N N 4  
N65 CE  NZ  SING N N 5  
N65 CE  CD  SING N N 6  
N65 C1  C2  SING N N 7  
N65 C   O   DOUB N N 8  
N65 C   CA  SING N N 9  
N65 CG  CD  SING N N 10 
N65 CG  CB  SING N N 11 
N65 CA  CB  SING N N 12 
N65 CA  N   SING N N 13 
N65 C5  H1  SING N N 14 
N65 C5  H6  SING N N 15 
N65 C5  H3  SING N N 16 
N65 C3  H4  SING N N 17 
N65 C3  H5  SING N N 18 
N65 N   H   SING N N 19 
N65 N   H2  SING N N 20 
N65 CA  HA  SING N N 21 
N65 CB  H11 SING N N 22 
N65 CB  H12 SING N N 23 
N65 CG  H13 SING N N 24 
N65 CG  H14 SING N N 25 
N65 CD  H15 SING N N 26 
N65 CD  H16 SING N N 27 
N65 CE  H17 SING N N 28 
N65 CE  H18 SING N N 29 
N65 C1  H19 SING N N 30 
N65 C1  H20 SING N N 31 
N65 C1  H21 SING N N 32 
N65 C2  H22 SING N N 33 
N65 C2  H23 SING N N 34 
N65 C   OXT SING N N 35 
N65 OXT HXT SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N65 InChI            InChI                1.03  "InChI=1S/C11H22N2O2/c1-3-6-9(2)13-8-5-4-7-10(12)11(14)15/h10H,3-8,12H2,1-2H3,(H,14,15)/b13-9+/t10-/m0/s1" 
N65 InChIKey         InChI                1.03  OPJYFGJKMVLUDU-YWEFTTLKSA-N                                                                                
N65 SMILES_CANONICAL CACTVS               3.385 "CCCC(C)=NCCCC[C@H](N)C(O)=O"                                                                              
N65 SMILES           CACTVS               3.385 "CCCC(C)=NCCCC[CH](N)C(O)=O"                                                                               
N65 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC/C(=N/CCCC[C@@H](C(=O)O)N)/C"                                                                          
N65 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC(=NCCCCC(C(=O)O)N)C"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           N65 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-[(~{E})-pentan-2-ylideneamino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N65 "Create component"       2019-11-13 PDBE 
N65 "Modify one letter code" 2020-02-14 PDBE 
N65 "Initial release"        2020-06-03 RCSB 
N65 "Modify backbone"        2023-11-03 PDBE 
# 
