data_VL5
#

_chem_comp.id                                   VL5
_chem_comp.name                                 "(2S)-2-[(Z)-[1-(2-azanyl-1,3-thiazol-4-yl)-2-[[(2S)-3-methyl-1-oxidanylidene-3-(sulfooxyamino)butan-2-yl]amino]-2-oxidanylidene-ethylidene]amino]oxy-3-[4-[N-[(3R)-piperidin-3-yl]carbamimidoyl]phenoxy]propanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H34 N8 O10 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "AIC499 (bound)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-27
_chem_comp.pdbx_modified_date                   2021-07-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       670.715
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VL5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ONK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VL5  C10  C1   C  0  1  Y  N  N   -3.588  -16.865   -1.747   -5.873  -0.285   0.573  C10  VL5   1  
VL5  C11  C2   C  0  1  Y  N  N   -2.631  -16.946   -2.754   -5.011  -0.462   1.656  C11  VL5   2  
VL5  C12  C3   C  0  1  Y  N  N   -2.986  -16.742   -4.079   -3.861   0.291   1.749  C12  VL5   3  
VL5  C13  C4   C  0  1  Y  N  N   -4.311  -16.471   -4.397   -3.559   1.226   0.767  C13  VL5   4  
VL5  C14  C5   C  0  1  Y  N  N   -5.270  -16.390   -3.395   -4.416   1.405  -0.313  C14  VL5   5  
VL5  C15  C6   C  0  1  Y  N  N   -4.912  -16.589   -2.069   -5.564   0.651  -0.415  C15  VL5   6  
VL5  C17  C7   C  0  1  N  N  N   -3.721  -16.534   -6.740   -2.178   2.910  -0.183  C17  VL5   7  
VL5  C18  C8   C  0  1  N  N  S   -4.340  -16.107   -8.062   -0.865   3.645   0.095  C18  VL5   8  
VL5  C19  C9   C  0  1  N  N  N   -3.306  -16.196   -9.139   -0.919   4.269   1.466  C19  VL5   9  
VL5  C2   C10  C  0  1  N  N  N   -0.072  -15.834   -0.937  -10.298  -1.049   0.105  C2   VL5  10  
VL5  C24  C11  C  0  1  N  N  N   -7.156  -17.373   -9.680    2.538   2.576  -0.365  C24  VL5  11  
VL5  C25  C12  C  0  1  Y  N  N   -8.035  -17.019  -10.826    3.817   3.176  -0.804  C25  VL5  12  
VL5  C27  C13  C  0  1  Y  N  N   -8.657  -15.784  -12.598    5.977   3.083  -1.393  C27  VL5  13  
VL5  C3   C14  C  0  1  N  N  R   -1.086  -15.928    0.207   -9.182  -1.716  -0.702  C3   VL5  14  
VL5  C30  C15  C  0  1  Y  N  N   -9.206  -17.724  -11.158    3.958   4.498  -1.020  C30  VL5  15  
VL5  C31  C16  C  0  1  N  N  N   -7.450  -18.493   -8.786    2.475   1.136  -0.022  C31  VL5  16  
VL5  C34  C17  C  0  1  N  N  S   -8.921  -19.318   -7.031    3.556  -0.996   0.449  C34  VL5  17  
VL5  C35  C18  C  0  1  N  N  N   -8.222  -19.653   -5.697    4.726  -1.767  -0.167  C35  VL5  18  
VL5  C36  C19  C  0  1  N  N  N   -7.134  -18.625   -5.401    4.624  -1.713  -1.692  C36  VL5  19  
VL5  C37  C20  C  0  1  N  N  N   -7.631  -21.055   -5.823    6.045  -1.134   0.279  C37  VL5  20  
VL5  C39  C21  C  0  1  N  N  N  -10.355  -18.944   -6.815    3.656  -1.049   1.952  C39  VL5  21  
VL5  C4   C22  C  0  1  N  N  N   -1.948  -14.666    0.268   -9.608  -1.812  -2.170  C4   VL5  22  
VL5  C5   C23  C  0  1  N  N  N   -1.073  -13.421    0.305  -10.920  -2.598  -2.262  C5   VL5  23  
VL5  C6   C24  C  0  1  N  N  N   -0.134  -13.417   -0.896  -11.985  -1.905  -1.409  C6   VL5  24  
VL5  C8   C25  C  0  1  N  N  N   -3.204  -17.079   -0.310   -7.108  -1.092   0.470  C8   VL5  25  
VL5  N1   N1   N  0  1  N  N  N    0.735  -14.604   -0.852  -11.530  -1.838  -0.014  N1   VL5  26  
VL5  N23  N2   N  0  1  N  N  N   -6.144  -16.669   -9.404    1.468   3.314  -0.280  N23  VL5  27  
VL5  N26  N3   N  0  1  Y  N  N   -7.747  -15.940  -11.630    4.915   2.447  -1.010  N26  VL5  28  
VL5  N28  N4   N  0  1  N  N  N   -8.575  -14.722  -13.570    7.205   2.501  -1.658  N28  VL5  29  
VL5  N33  N5   N  0  1  N  N  N   -8.305  -18.252   -7.800    3.603   0.399   0.006  N33  VL5  30  
VL5  N38  N6   N  0  1  N  N  N   -9.133  -19.732   -4.521    4.679  -3.166   0.278  N38  VL5  31  
VL5  N7   N7   N  0  1  N  N  N   -1.915  -17.121    0.053   -7.959  -0.917  -0.600  N7   VL5  32  
VL5  N9   N8   N  0  1  N  N  N   -4.118  -17.221    0.553   -7.392  -1.970   1.391  N9   VL5  33  
VL5  O16  O1   O  0  1  N  N  N   -4.664  -16.273   -5.703   -2.426   1.967   0.862  O16  VL5  34  
VL5  O20  O2   O  0  1  N  N  N   -2.524  -15.237   -9.290   -1.801   5.247   1.724  O20  VL5  35  
VL5  O21  O3   O  0  1  N  N  N   -3.269  -17.227   -9.839   -0.168   3.888   2.333  O21  VL5  36  
VL5  O22  O4   O  0  1  N  N  N   -5.419  -16.972   -8.411    0.222   2.720   0.035  O22  VL5  37  
VL5  O32  O5   O  0  1  N  N  N   -6.899  -19.580   -8.928    1.405   0.619   0.234  O32  VL5  38  
VL5  O40  O6   O  0  1  N  N  N  -10.739  -17.784   -6.952    3.756  -0.027   2.587  O40  VL5  39  
VL5  O41  O7   O  0  1  N  N  N   -9.660  -18.539   -4.140    5.784  -3.935  -0.293  O41  VL5  40  
VL5  O43  O8   O  0  1  N  N  N  -10.575  -18.946   -1.886    4.698  -6.102  -0.654  O43  VL5  41  
VL5  O44  O9   O  0  1  N  N  N  -10.124  -16.662   -2.628    7.029  -5.936  -0.347  O44  VL5  42  
VL5  O45  O10  O  0  1  N  N  N   -8.305  -18.094   -2.145    5.412  -5.431   1.491  O45  VL5  43  
VL5  S29  S1   S  0  1  Y  N  N   -9.916  -16.954  -12.550    5.617   4.802  -1.526  S29  VL5  44  
VL5  S42  S2   S  0  1  N  N  N   -9.681  -18.061   -2.674    5.801  -5.399   0.124  S42  VL5  45  
VL5  H1   H1   H  0  1  N  N  N   -1.605  -17.169   -2.502   -5.245  -1.188   2.421  H1   VL5  46  
VL5  H2   H2   H  0  1  N  N  N   -2.239  -16.793   -4.857   -3.193   0.155   2.587  H2   VL5  47  
VL5  H3   H3   H  0  1  N  N  N   -6.297  -16.172   -3.649   -4.178   2.132  -1.075  H3   VL5  48  
VL5  H4   H4   H  0  1  N  N  N   -5.659  -16.530   -1.291   -6.229   0.790  -1.254  H4   VL5  49  
VL5  H5   H5   H  0  1  N  N  N   -3.486  -17.608   -6.768   -2.995   3.630  -0.225  H5   VL5  50  
VL5  H6   H6   H  0  1  N  N  N   -2.799  -15.962   -6.558   -2.105   2.386  -1.136  H6   VL5  51  
VL5  H7   H7   H  0  1  N  N  N   -4.692  -15.068   -7.977   -0.720   4.425  -0.653  H7   VL5  52  
VL5  H8   H8   H  0  1  N  N  N   -0.614  -15.839   -1.894  -10.003  -0.991   1.153  H8   VL5  53  
VL5  H9   H9   H  0  1  N  N  N    0.599  -16.704   -0.891  -10.472  -0.043  -0.279  H9   VL5  54  
VL5  H10  H10  H  0  1  N  N  N   -0.526  -16.003    1.151   -8.998  -2.716  -0.311  H10  VL5  55  
VL5  H11  H11  H  0  1  N  N  N   -9.596  -18.589  -10.642    3.185   5.244  -0.902  H11  VL5  56  
VL5  H12  H12  H  0  1  N  N  N   -8.905  -20.233   -7.641    2.616  -1.447   0.132  H12  VL5  57  
VL5  H13  H13  H  0  1  N  N  N   -6.643  -18.874   -4.449    4.659  -0.675  -2.023  H13  VL5  58  
VL5  H14  H14  H  0  1  N  N  N   -6.390  -18.636   -6.211    5.457  -2.262  -2.132  H14  VL5  59  
VL5  H15  H15  H  0  1  N  N  N   -7.585  -17.624   -5.330    3.684  -2.164  -2.010  H15  VL5  60  
VL5  H16  H16  H  0  1  N  N  N   -7.124  -21.325   -4.885    6.117  -1.173   1.366  H16  VL5  61  
VL5  H17  H17  H  0  1  N  N  N   -8.437  -21.776   -6.025    6.878  -1.683  -0.160  H17  VL5  62  
VL5  H18  H18  H  0  1  N  N  N   -6.906  -21.074   -6.650    6.080  -0.096  -0.051  H18  VL5  63  
VL5  H19  H19  H  0  1  N  Y  N  -11.065  -19.708   -6.534    3.638  -2.002   2.461  H19  VL5  64  
VL5  H20  H20  H  0  1  N  N  N   -2.595  -14.627   -0.621   -9.755  -0.811  -2.573  H20  VL5  65  
VL5  H21  H21  H  0  1  N  N  N   -2.571  -14.697    1.174   -8.835  -2.326  -2.741  H21  VL5  66  
VL5  H22  H22  H  0  1  N  N  N   -0.481  -13.418    1.232  -11.250  -2.634  -3.300  H22  VL5  67  
VL5  H23  H23  H  0  1  N  N  N   -1.710  -12.525    0.274  -10.762  -3.613  -1.895  H23  VL5  68  
VL5  H24  H24  H  0  1  N  N  N    0.486  -12.509   -0.872  -12.151  -0.896  -1.786  H24  VL5  69  
VL5  H25  H25  H  0  1  N  N  N   -0.726  -13.432   -1.823  -12.915  -2.470  -1.461  H25  VL5  70  
VL5  H26  H26  H  0  1  N  N  N    1.248  -14.605    0.006  -11.406  -2.763   0.370  H26  VL5  71  
VL5  H27  H27  H  0  1  N  N  N   -9.354  -14.780  -14.194    7.952   3.052  -1.942  H27  VL5  72  
VL5  H28  H28  H  0  1  N  N  N   -8.589  -13.839  -13.101    7.319   1.543  -1.560  H28  VL5  73  
VL5  H29  H29  H  0  1  N  N  N   -8.533  -17.304   -7.579    4.446   0.793  -0.267  H29  VL5  74  
VL5  H30  H30  H  0  1  N  N  N   -9.887  -20.348   -4.750    4.679  -3.226   1.285  H30  VL5  75  
VL5  H31  H31  H  0  1  N  N  N   -1.500  -18.014    0.227   -7.747  -0.264  -1.286  H31  VL5  76  
VL5  H32  H32  H  0  1  N  N  N   -3.748  -17.358    1.472   -8.203  -2.499   1.323  H32  VL5  77  
VL5  H33  H33  H  0  1  N  N  N   -1.924  -15.426  -10.002   -1.798   5.616   2.618  H33  VL5  78  
VL5  H34  H34  H  0  1  N  N  N  -10.078  -19.361   -1.191    4.621  -7.047  -0.461  H34  VL5  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VL5  N28  C27  SING  N  N   1  
VL5  C27  S29  SING  Y  N   2  
VL5  C27  N26  DOUB  Y  N   3  
VL5  S29  C30  SING  Y  N   4  
VL5  N26  C25  SING  Y  N   5  
VL5  C30  C25  DOUB  Y  N   6  
VL5  C25  C24  SING  N  N   7  
VL5  O21  C19  DOUB  N  N   8  
VL5  C24  N23  DOUB  N  Z   9  
VL5  C24  C31  SING  N  N  10  
VL5  N23  O22  SING  N  N  11  
VL5  O20  C19  SING  N  N  12  
VL5  C19  C18  SING  N  N  13  
VL5  O32  C31  DOUB  N  N  14  
VL5  C31  N33  SING  N  N  15  
VL5  O22  C18  SING  N  N  16  
VL5  C18  C17  SING  N  N  17  
VL5  N33  C34  SING  N  N  18  
VL5  C34  C39  SING  N  N  19  
VL5  C34  C35  SING  N  N  20  
VL5  O40  C39  DOUB  N  N  21  
VL5  C17  O16  SING  N  N  22  
VL5  C37  C35  SING  N  N  23  
VL5  O16  C13  SING  N  N  24  
VL5  C35  C36  SING  N  N  25  
VL5  C35  N38  SING  N  N  26  
VL5  N38  O41  SING  N  N  27  
VL5  C13  C12  DOUB  Y  N  28  
VL5  C13  C14  SING  Y  N  29  
VL5  O41  S42  SING  N  N  30  
VL5  C12  C11  SING  Y  N  31  
VL5  C14  C15  DOUB  Y  N  32  
VL5  C11  C10  DOUB  Y  N  33  
VL5  S42  O44  DOUB  N  N  34  
VL5  S42  O45  DOUB  N  N  35  
VL5  S42  O43  SING  N  N  36  
VL5  C15  C10  SING  Y  N  37  
VL5  C10  C8   SING  N  N  38  
VL5  C2   N1   SING  N  N  39  
VL5  C2   C3   SING  N  N  40  
VL5  C6   N1   SING  N  N  41  
VL5  C6   C5   SING  N  N  42  
VL5  C8   N7   SING  N  N  43  
VL5  C8   N9   DOUB  N  N  44  
VL5  N7   C3   SING  N  N  45  
VL5  C3   C4   SING  N  N  46  
VL5  C4   C5   SING  N  N  47  
VL5  C11  H1   SING  N  N  48  
VL5  C12  H2   SING  N  N  49  
VL5  C14  H3   SING  N  N  50  
VL5  C15  H4   SING  N  N  51  
VL5  C17  H5   SING  N  N  52  
VL5  C17  H6   SING  N  N  53  
VL5  C18  H7   SING  N  N  54  
VL5  C2   H8   SING  N  N  55  
VL5  C2   H9   SING  N  N  56  
VL5  C3   H10  SING  N  N  57  
VL5  C30  H11  SING  N  N  58  
VL5  C34  H12  SING  N  N  59  
VL5  C36  H13  SING  N  N  60  
VL5  C36  H14  SING  N  N  61  
VL5  C36  H15  SING  N  N  62  
VL5  C37  H16  SING  N  N  63  
VL5  C37  H17  SING  N  N  64  
VL5  C37  H18  SING  N  N  65  
VL5  C39  H19  SING  N  N  66  
VL5  C4   H20  SING  N  N  67  
VL5  C4   H21  SING  N  N  68  
VL5  C5   H22  SING  N  N  69  
VL5  C5   H23  SING  N  N  70  
VL5  C6   H24  SING  N  N  71  
VL5  C6   H25  SING  N  N  72  
VL5  N1   H26  SING  N  N  73  
VL5  N28  H27  SING  N  N  74  
VL5  N28  H28  SING  N  N  75  
VL5  N33  H29  SING  N  N  76  
VL5  N38  H30  SING  N  N  77  
VL5  N7   H31  SING  N  N  78  
VL5  N9   H32  SING  N  N  79  
VL5  O20  H33  SING  N  N  80  
VL5  O43  H34  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VL5  InChI             InChI                 1.03   "InChI=1S/C25H34N8O10S2/c1-25(2,33-43-45(38,39)40)19(11-34)31-22(35)20(17-13-44-24(27)30-17)32-42-18(23(36)37)12-41-16-7-5-14(6-8-16)21(26)29-15-4-3-9-28-10-15/h5-8,11,13,15,18-19,28,33H,3-4,9-10,12H2,1-2H3,(H2,26,29)(H2,27,30)(H,31,35)(H,36,37)(H,38,39,40)/b32-20-/t15-,18+,19-/m1/s1"  
VL5  InChIKey          InChI                 1.03   NFNVPYWCKFTXAX-OOLKDPNPSA-N  
VL5  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(NO[S](O)(=O)=O)[C@H](NC(=O)C(=N\O[C@@H](COc1ccc(cc1)C(=N)N[C@@H]2CCCNC2)C(O)=O)/c3csc(N)n3)C=O"  
VL5  SMILES            CACTVS                3.385  "CC(C)(NO[S](O)(=O)=O)[CH](NC(=O)C(=NO[CH](COc1ccc(cc1)C(=N)N[CH]2CCCNC2)C(O)=O)c3csc(N)n3)C=O"  
VL5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(/c1ccc(cc1)OC[C@@H](C(=O)O)O/N=C(/c2csc(n2)N)\C(=O)N[C@H](C=O)C(C)(C)NOS(=O)(=O)O)\N[C@@H]3CCCNC3"  
VL5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C(C=O)NC(=O)C(=NOC(COc1ccc(cc1)C(=N)NC2CCCNC2)C(=O)O)c3csc(n3)N)NOS(=O)(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          VL5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[(~{Z})-[1-(2-azanyl-1,3-thiazol-4-yl)-2-[[(2~{S})-3-methyl-1-oxidanylidene-3-(sulfooxyamino)butan-2-yl]amino]-2-oxidanylidene-ethylidene]amino]oxy-3-[4-[~{N}-[(3~{R})-piperidin-3-yl]carbamimidoyl]phenoxy]propanoic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VL5
_pdbx_chem_comp_synonyms.name        "AIC499 (bound)"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VL5  "Create component"  2021-05-27  PDBE  
VL5  "Initial release"   2021-08-04  RCSB  
##
