data_S56
#

_chem_comp.id                                   S56
_chem_comp.name                                 "(2S)-3-[4-amino-7-(2-methoxyethyl)-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyano-N-(propan-2-yl)propanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H30 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Rao-IV-156, bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-09-28
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       498.576
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S56
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5TEH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S56  O1   O1   O  0  1  N  N  N   -5.559  -42.960   4.919   0.138  -3.270  -1.456  O1   S56   1  
S56  C21  C1   C  0  1  N  N  N   -5.286  -41.839   4.486   0.399  -3.049  -0.292  C21  S56   2  
S56  N4   N1   N  0  1  N  N  N   -5.096  -41.580   3.182   0.204  -4.006   0.636  N4   S56   3  
S56  C22  C2   C  0  1  N  N  N   -4.098  -42.253   2.339  -0.324  -5.314   0.239  C22  S56   4  
S56  C24  C3   C  0  1  N  N  N   -2.703  -42.104   2.918   0.827  -6.208  -0.229  C24  S56   5  
S56  C23  C4   C  0  1  N  N  N   -4.481  -43.701   2.120  -1.023  -5.966   1.434  C23  S56   6  
S56  C19  C5   C  0  1  N  N  S   -5.237  -40.617   5.409   0.948  -1.706   0.115  C19  S56   7  
S56  C20  C6   C  0  1  N  N  N   -3.882  -40.374   5.928   0.034  -1.075   1.082  C20  S56   8  
S56  N3   N2   N  0  1  N  N  N   -2.841  -40.138   6.330  -0.670  -0.589   1.829  N3   S56   9  
S56  C18  C7   C  0  1  N  N  N   -6.240  -40.710   6.591   1.078  -0.812  -1.120  C18  S56  10  
S56  C17  C8   C  0  1  Y  N  N   -7.268  -39.546   6.493   1.740   0.486  -0.734  C17  S56  11  
S56  N5   N3   N  0  1  Y  N  N   -8.385  -39.603   5.681   3.088   0.720  -0.754  N5   S56  12  
S56  C25  C9   C  0  1  N  N  N   -8.491  -40.432   4.462   4.102  -0.258  -1.157  C25  S56  13  
S56  C26  C10  C  0  1  N  N  N   -9.704  -40.280   3.563   4.555  -1.056   0.067  C26  S56  14  
S56  O2   O2   O  0  1  N  N  N  -10.850  -40.744   4.251   5.544  -2.010  -0.325  O2   S56  15  
S56  C27  C11  C  0  1  N  N  N  -12.079  -40.284   3.718   6.037  -2.812   0.749  C27  S56  16  
S56  C2   C12  C  0  1  Y  N  N   -9.184  -38.521   6.035   3.354   1.999  -0.345  C2   S56  17  
S56  N2   N4   N  0  1  Y  N  N  -10.482  -38.368   5.719   4.470   2.709  -0.189  N2   S56  18  
S56  C1   C13  C  0  1  Y  N  N  -10.984  -37.213   6.156   4.420   3.955   0.232  C1   S56  19  
S56  N1   N5   N  0  1  Y  N  N  -10.368  -36.243   6.827   3.286   4.565   0.520  N1   S56  20  
S56  C4   C14  C  0  1  Y  N  N   -7.149  -38.282   7.033   1.090   1.601  -0.319  C4   S56  21  
S56  C3   C15  C  0  1  Y  N  N   -8.400  -37.605   6.764   2.122   2.610  -0.050  C3   S56  22  
S56  C    C16  C  0  1  Y  N  N   -9.068  -36.411   7.151   2.119   3.938   0.395  C    S56  23  
S56  N    N6   N  0  1  N  N  N   -8.481  -35.431   7.846   0.932   4.581   0.697  N    S56  24  
S56  C5   C17  C  0  1  Y  N  N   -5.963  -37.712   7.728  -0.375   1.768  -0.164  C5   S56  25  
S56  C16  C18  C  0  1  Y  N  N   -6.030  -37.380   9.078  -0.924   1.982   1.100  C16  S56  26  
S56  C15  C19  C  0  1  Y  N  N   -4.935  -36.846   9.737  -2.287   2.137   1.241  C15  S56  27  
S56  C8   C20  C  0  1  Y  N  N   -3.742  -36.653   9.055  -3.112   2.080   0.126  C8   S56  28  
S56  C7   C21  C  0  1  Y  N  N   -3.657  -36.975   7.702  -2.569   1.865  -1.134  C7   S56  29  
S56  C6   C22  C  0  1  Y  N  N   -4.765  -37.493   7.045  -1.206   1.716  -1.282  C6   S56  30  
S56  O    O3   O  0  1  N  N  N   -2.697  -36.188   9.865  -4.455   2.233   0.268  O    S56  31  
S56  C9   C23  C  0  1  Y  N  N   -1.685  -35.339   9.403  -5.250   1.159   0.019  C9   S56  32  
S56  C14  C24  C  0  1  Y  N  N   -0.454  -35.486  10.035  -6.630   1.299   0.026  C14  S56  33  
S56  C13  C25  C  0  1  Y  N  N    0.597  -34.656   9.683  -7.436   0.206  -0.228  C13  S56  34  
S56  C12  C26  C  0  1  Y  N  N    0.428  -33.685   8.720  -6.867  -1.027  -0.489  C12  S56  35  
S56  C11  C27  C  0  1  Y  N  N   -0.798  -33.538   8.097  -5.492  -1.170  -0.498  C11  S56  36  
S56  C10  C28  C  0  1  Y  N  N   -1.861  -34.367   8.426  -4.682  -0.079  -0.249  C10  S56  37  
S56  H1   H1   H  0  1  N  N  N   -5.672  -40.882   2.756   0.413  -3.830   1.566  H1   S56  38  
S56  H2   H2   H  0  1  N  N  N   -4.099  -41.761   1.355  -1.038  -5.186  -0.574  H2   S56  39  
S56  H3   H3   H  0  1  N  N  N   -2.475  -41.037   3.057   1.541  -6.336   0.584  H3   S56  40  
S56  H4   H4   H  0  1  N  N  N   -2.652  -42.619   3.889   0.434  -7.181  -0.524  H4   S56  41  
S56  H5   H5   H  0  1  N  N  N   -1.970  -42.548   2.228   1.324  -5.743  -1.080  H5   S56  42  
S56  H6   H6   H  0  1  N  N  N   -5.497  -43.753   1.701  -0.308  -6.094   2.247  H6   S56  43  
S56  H7   H7   H  0  1  N  N  N   -3.771  -44.166   1.420  -1.842  -5.330   1.767  H7   S56  44  
S56  H8   H8   H  0  1  N  N  N   -4.453  -44.237   3.080  -1.415  -6.939   1.139  H8   S56  45  
S56  H9   H9   H  0  1  N  N  N   -5.530  -39.744   4.808   1.928  -1.837   0.573  H9   S56  46  
S56  H10  H10  H  0  1  N  N  N   -6.771  -41.672   6.546   1.682  -1.318  -1.873  H10  S56  47  
S56  H11  H11  H  0  1  N  N  N   -5.693  -40.637   7.543   0.087  -0.608  -1.527  H11  S56  48  
S56  H12  H12  H  0  1  N  N  N   -8.461  -41.483   4.785   3.678  -0.937  -1.897  H12  S56  49  
S56  H13  H13  H  0  1  N  N  N   -7.606  -40.212   3.847   4.957   0.262  -1.589  H13  S56  50  
S56  H14  H14  H  0  1  N  N  N   -9.560  -40.871   2.647   4.979  -0.377   0.807  H14  S56  51  
S56  H15  H15  H  0  1  N  N  N   -9.837  -39.220   3.299   3.700  -1.576   0.499  H15  S56  52  
S56  H16  H16  H  0  1  N  N  N  -12.912  -40.691   4.311   5.212  -3.369   1.195  H16  S56  53  
S56  H17  H17  H  0  1  N  N  N  -12.106  -39.185   3.755   6.783  -3.510   0.370  H17  S56  54  
S56  H18  H18  H  0  1  N  N  N  -12.174  -40.619   2.674   6.491  -2.170   1.504  H18  S56  55  
S56  H19  H19  H  0  1  N  N  N  -12.028  -37.042   5.937   5.346   4.500   0.347  H19  S56  56  
S56  H20  H20  H  0  1  N  N  N   -9.142  -34.700   8.016   0.944   5.501   1.004  H20  S56  57  
S56  H21  H21  H  0  1  N  N  N   -8.151  -35.792   8.718   0.088   4.112   0.602  H21  S56  58  
S56  H22  H22  H  0  1  N  N  N   -6.950  -37.541   9.620  -0.282   2.027   1.967  H22  S56  59  
S56  H23  H23  H  0  1  N  N  N   -5.010  -36.580  10.781  -2.713   2.303   2.219  H23  S56  60  
S56  H24  H24  H  0  1  N  N  N   -2.732  -36.822   7.166  -3.214   1.821  -1.999  H24  S56  61  
S56  H25  H25  H  0  1  N  N  N   -4.699  -37.729   5.993  -0.784   1.549  -2.262  H25  S56  62  
S56  H26  H26  H  0  1  N  N  N   -0.319  -36.242  10.794  -7.075   2.262   0.231  H26  S56  63  
S56  H27  H27  H  0  1  N  N  N    1.556  -34.770  10.167  -8.510   0.314  -0.221  H27  S56  64  
S56  H28  H28  H  0  1  N  N  N    1.252  -33.040   8.452  -7.498  -1.881  -0.688  H28  S56  65  
S56  H29  H29  H  0  1  N  N  N   -0.929  -32.771   7.348  -5.050  -2.133  -0.706  H29  S56  66  
S56  H30  H30  H  0  1  N  N  N   -2.813  -34.258   7.929  -3.608  -0.190  -0.256  H30  S56  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S56  C23  C22  SING  N  N   1  
S56  C22  C24  SING  N  N   2  
S56  C22  N4   SING  N  N   3  
S56  N4   C21  SING  N  N   4  
S56  C26  O2   SING  N  N   5  
S56  C26  C25  SING  N  N   6  
S56  C27  O2   SING  N  N   7  
S56  C25  N5   SING  N  N   8  
S56  C21  O1   DOUB  N  N   9  
S56  C21  C19  SING  N  N  10  
S56  C19  C20  SING  N  N  11  
S56  C19  C18  SING  N  N  12  
S56  N5   C2   SING  Y  N  13  
S56  N5   C17  SING  Y  N  14  
S56  N2   C2   DOUB  Y  N  15  
S56  N2   C1   SING  Y  N  16  
S56  C20  N3   TRIP  N  N  17  
S56  C2   C3   SING  Y  N  18  
S56  C1   N1   DOUB  Y  N  19  
S56  C17  C18  SING  N  N  20  
S56  C17  C4   DOUB  Y  N  21  
S56  C3   C4   SING  Y  N  22  
S56  C3   C    DOUB  Y  N  23  
S56  N1   C    SING  Y  N  24  
S56  C4   C5   SING  N  N  25  
S56  C6   C7   DOUB  Y  N  26  
S56  C6   C5   SING  Y  N  27  
S56  C    N    SING  N  N  28  
S56  C7   C8   SING  Y  N  29  
S56  C5   C16  DOUB  Y  N  30  
S56  C11  C10  DOUB  Y  N  31  
S56  C11  C12  SING  Y  N  32  
S56  C10  C9   SING  Y  N  33  
S56  C12  C13  DOUB  Y  N  34  
S56  C8   C15  DOUB  Y  N  35  
S56  C8   O    SING  N  N  36  
S56  C16  C15  SING  Y  N  37  
S56  C9   O    SING  N  N  38  
S56  C9   C14  DOUB  Y  N  39  
S56  C13  C14  SING  Y  N  40  
S56  N4   H1   SING  N  N  41  
S56  C22  H2   SING  N  N  42  
S56  C24  H3   SING  N  N  43  
S56  C24  H4   SING  N  N  44  
S56  C24  H5   SING  N  N  45  
S56  C23  H6   SING  N  N  46  
S56  C23  H7   SING  N  N  47  
S56  C23  H8   SING  N  N  48  
S56  C19  H9   SING  N  N  49  
S56  C18  H10  SING  N  N  50  
S56  C18  H11  SING  N  N  51  
S56  C25  H12  SING  N  N  52  
S56  C25  H13  SING  N  N  53  
S56  C26  H14  SING  N  N  54  
S56  C26  H15  SING  N  N  55  
S56  C27  H16  SING  N  N  56  
S56  C27  H17  SING  N  N  57  
S56  C27  H18  SING  N  N  58  
S56  C1   H19  SING  N  N  59  
S56  N    H20  SING  N  N  60  
S56  N    H21  SING  N  N  61  
S56  C16  H22  SING  N  N  62  
S56  C15  H23  SING  N  N  63  
S56  C7   H24  SING  N  N  64  
S56  C6   H25  SING  N  N  65  
S56  C14  H26  SING  N  N  66  
S56  C13  H27  SING  N  N  67  
S56  C12  H28  SING  N  N  68  
S56  C11  H29  SING  N  N  69  
S56  C10  H30  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S56  SMILES            ACDLabs               12.01  "O=C(C(C#N)Cc3c(c2ccc(Oc1ccccc1)cc2)c4c(n3CCOC)ncnc4N)NC(C)C"  
S56  InChI             InChI                 1.03   "InChI=1S/C28H30N6O3/c1-18(2)33-28(35)20(16-29)15-23-24(25-26(30)31-17-32-27(25)34(23)13-14-36-3)19-9-11-22(12-10-19)37-21-7-5-4-6-8-21/h4-12,17-18,20H,13-15H2,1-3H3,(H,33,35)(H2,30,31,32)/t20-/m0/s1"  
S56  InChIKey          InChI                 1.03   GAMOPTBAZOPJOL-FQEVSTJZSA-N  
S56  SMILES_CANONICAL  CACTVS                3.385  "COCCn1c(C[C@@H](C#N)C(=O)NC(C)C)c(c2ccc(Oc3ccccc3)cc2)c4c(N)ncnc14"  
S56  SMILES            CACTVS                3.385  "COCCn1c(C[CH](C#N)C(=O)NC(C)C)c(c2ccc(Oc3ccccc3)cc2)c4c(N)ncnc14"  
S56  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)NC(=O)[C@@H](Cc1c(c2c(ncnc2n1CCOC)N)c3ccc(cc3)Oc4ccccc4)C#N"  
S56  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)NC(=O)C(Cc1c(c2c(ncnc2n1CCOC)N)c3ccc(cc3)Oc4ccccc4)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S56  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-3-[4-amino-7-(2-methoxyethyl)-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyano-N-(propan-2-yl)propanamide"  
S56  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-3-[4-azanyl-7-(2-methoxyethyl)-5-(4-phenoxyphenyl)pyrrolo[2,3-d]pyrimidin-6-yl]-2-cyano-~{N}-propan-2-yl-propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S56  "Create component"  2016-09-28  RCSB  
S56  "Initial release"   2017-09-27  RCSB  
S56  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S56
_pdbx_chem_comp_synonyms.name        "Rao-IV-156, bound form"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
