data_XL6
#

_chem_comp.id                                   XL6
_chem_comp.name                                 "N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H24 Cl2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-28
_chem_comp.pdbx_modified_date                   2019-07-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       491.367
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XL6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6BFR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XL6  C1   C1   C   0  1  Y  N  N   2.717  -21.383   8.415  -5.909  -0.729  -0.101  C1   XL6   1  
XL6  C2   C2   C   0  1  Y  N  N   3.402  -20.166   8.404  -4.546  -0.976  -0.007  C2   XL6   2  
XL6  C3   C3   C   0  1  Y  N  N   4.551  -19.983   7.633  -3.676   0.052   0.306  C3   XL6   3  
XL6  C4   C4   C   0  1  Y  N  N   4.988  -21.049   6.864  -4.161   1.328   0.525  C4   XL6   4  
XL6  C5   C5   C   0  1  Y  N  N   4.323  -22.273   6.855  -5.523   1.579   0.431  C5   XL6   5  
XL6  C6   C6   C   0  1  Y  N  N   3.180  -22.429   7.625  -6.396   0.551   0.113  C6   XL6   6  
XL6  O1   O1   O   0  1  N  N  N   1.606  -21.462   9.209  -6.764  -1.740  -0.408  O1   XL6   7  
XL6  O2   O2   O   0  1  N  N  N   4.832  -23.257   6.060  -6.000   2.834   0.647  O2   XL6   8  
XL6  C7   C7   C   0  1  N  N  N   0.861  -22.679   9.260  -8.153  -1.413  -0.488  C7   XL6   9  
XL6  C8   C8   C   0  1  N  N  N   4.777  -24.610   6.519  -7.412   3.020   0.534  C8   XL6  10  
XL6  CL1  CL1  CL  0  0  N  N  N   2.842  -18.867   9.407  -3.934  -2.577  -0.281  CL1  XL6  11  
XL6  CL2  CL2  CL  0  0  N  N  N   6.404  -20.850   5.895  -3.066   2.617   0.919  CL2  XL6  12  
XL6  C9   C9   C   0  1  N  N  N   5.306  -18.682   7.628  -2.197  -0.219   0.409  C9   XL6  13  
XL6  O3   O3   O   0  1  N  N  N   6.428  -18.799   8.513  -1.587  -0.026  -0.869  O3   XL6  14  
XL6  C10  C10  C   0  1  Y  N  N   7.545  -18.033   8.276  -0.245  -0.231  -0.950  C10  XL6  15  
XL6  C11  C11  C   0  1  Y  N  N   8.781  -18.557   8.595   0.428  -0.065  -2.155  C11  XL6  16  
XL6  N1   N1   N   0  1  Y  N  N   9.908  -17.864   8.401   1.734  -0.273  -2.197  N1   XL6  17  
XL6  C12  C12  C   0  1  Y  N  N   9.770  -16.624   7.882   2.398  -0.635  -1.110  C12  XL6  18  
XL6  N2   N2   N   0  1  Y  N  N   8.599  -16.044   7.543   1.789  -0.802   0.054  N2   XL6  19  
XL6  C13  C13  C   0  1  Y  N  N   7.489  -16.752   7.750   0.486  -0.606   0.171  C13  XL6  20  
XL6  N3   N3   N   0  1  N  N  N  10.899  -15.902   7.651   3.767  -0.844  -1.193  N3   XL6  21  
XL6  C14  C14  C   0  1  Y  N  N  11.035  -14.554   7.236   4.505  -1.114  -0.035  C14  XL6  22  
XL6  C15  C15  C   0  1  Y  N  N  11.461  -13.583   8.167   5.521  -0.246   0.365  C15  XL6  23  
XL6  C16  C16  C   0  1  Y  N  N  11.597  -12.239   7.715   6.248  -0.518   1.514  C16  XL6  24  
XL6  C17  C17  C   0  1  Y  N  N  11.292  -11.907   6.417   5.966  -1.648   2.259  C17  XL6  25  
XL6  C18  C18  C   0  1  Y  N  N  10.864  -12.877   5.528   4.959  -2.509   1.863  C18  XL6  26  
XL6  C19  C19  C   0  1  Y  N  N  10.727  -14.206   5.913   4.225  -2.242   0.722  C19  XL6  27  
XL6  C20  C20  C   0  1  N  N  N  10.265  -15.228   4.908   3.128  -3.183   0.295  C20  XL6  28  
XL6  N4   N4   N   0  1  N  N  N  11.765  -14.007   9.482   5.806   0.898  -0.392  N4   XL6  29  
XL6  C21  C21  C   0  1  N  N  N  12.185  -13.320  10.566   7.002   1.508  -0.268  C21  XL6  30  
XL6  C22  C22  C   0  1  N  N  N  12.493  -14.132  11.771   7.271   2.795  -1.004  C22  XL6  31  
XL6  C23  C23  C   0  1  N  N  N  12.036  -15.532  11.966   8.691   3.273  -0.692  C23  XL6  32  
XL6  O4   O4   O   0  1  N  N  N  12.379  -12.101  10.551   7.861   1.021   0.437  O4   XL6  33  
XL6  H1   H1   H   0  1  N  N  N   2.647  -23.368   7.611  -7.456   0.745   0.039  H1   XL6  34  
XL6  H2   H2   H   0  1  N  N  N   0.008  -22.559   9.944  -8.304  -0.657  -1.259  H2   XL6  35  
XL6  H3   H3   H   0  1  N  N  N   0.492  -22.925   8.254  -8.722  -2.308  -0.740  H3   XL6  36  
XL6  H4   H4   H   0  1  N  N  N   1.509  -23.491   9.621  -8.491  -1.025   0.473  H4   XL6  37  
XL6  H5   H5   H   0  1  N  N  N   5.226  -25.272   5.764  -7.921   2.385   1.258  H5   XL6  38  
XL6  H6   H6   H   0  1  N  N  N   5.334  -24.700   7.463  -7.658   4.064   0.729  H6   XL6  39  
XL6  H7   H7   H   0  1  N  N  N   3.728  -24.899   6.683  -7.734   2.753  -0.473  H7   XL6  40  
XL6  H8   H8   H   0  1  N  N  N   5.659  -18.463   6.610  -1.752   0.466   1.131  H8   XL6  41  
XL6  H9   H9   H   0  1  N  N  N   4.647  -17.870   7.970  -2.037  -1.246   0.736  H9   XL6  42  
XL6  H10  H10  H   0  1  N  N  N   8.840  -19.552   9.012  -0.108   0.229  -3.045  H10  XL6  43  
XL6  H11  H11  H   0  1  N  N  N   6.530  -16.320   7.504  -0.004  -0.744   1.123  H11  XL6  44  
XL6  H12  H12  H   0  1  N  N  N  11.758  -16.394   7.795   4.213  -0.804  -2.054  H12  XL6  45  
XL6  H13  H13  H   0  1  N  N  N  11.942  -11.476   8.397   7.036   0.152   1.826  H13  XL6  46  
XL6  H14  H14  H   0  1  N  N  N  11.387  -10.883   6.089   6.534  -1.859   3.153  H14  XL6  47  
XL6  H15  H15  H   0  1  N  N  N  10.631  -12.595   4.512   4.740  -3.388   2.451  H15  XL6  48  
XL6  H16  H16  H   0  1  N  N  N  11.137  -15.654   4.391   2.215  -2.948   0.841  H16  XL6  49  
XL6  H17  H17  H   0  1  N  N  N   9.718  -16.030   5.426   2.951  -3.072  -0.775  H17  XL6  50  
XL6  H18  H18  H   0  1  N  N  N   9.602  -14.747   4.174   3.426  -4.209   0.509  H18  XL6  51  
XL6  H19  H19  H   0  1  N  N  N  11.648  -14.988   9.636   5.144   1.251  -1.006  H19  XL6  52  
XL6  H20  H20  H   0  1  N  N  N  13.591  -14.164  11.837   7.172   2.628  -2.076  H20  XL6  53  
XL6  H21  H21  H   0  1  N  N  N  12.091  -13.565  12.624   6.555   3.553  -0.686  H21  XL6  54  
XL6  H22  H22  H   0  1  N  N  N  12.397  -15.904  12.936   8.791   3.440   0.381  H22  XL6  55  
XL6  H23  H23  H   0  1  N  N  N  10.937  -15.565  11.946   9.408   2.516  -1.010  H23  XL6  56  
XL6  H24  H24  H   0  1  N  Y  N  12.436  -16.164  11.159   8.886   4.204  -1.224  H24  XL6  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XL6  C20  C19  SING  N  N   1  
XL6  C18  C19  DOUB  Y  N   2  
XL6  C18  C17  SING  Y  N   3  
XL6  CL2  C4   SING  N  N   4  
XL6  C19  C14  SING  Y  N   5  
XL6  O2   C8   SING  N  N   6  
XL6  O2   C5   SING  N  N   7  
XL6  C17  C16  DOUB  Y  N   8  
XL6  C5   C4   DOUB  Y  N   9  
XL6  C5   C6   SING  Y  N  10  
XL6  C4   C3   SING  Y  N  11  
XL6  C14  N3   SING  N  N  12  
XL6  C14  C15  DOUB  Y  N  13  
XL6  N2   C13  DOUB  Y  N  14  
XL6  N2   C12  SING  Y  N  15  
XL6  C6   C1   DOUB  Y  N  16  
XL6  C9   C3   SING  N  N  17  
XL6  C9   O3   SING  N  N  18  
XL6  C3   C2   DOUB  Y  N  19  
XL6  N3   C12  SING  N  N  20  
XL6  C16  C15  SING  Y  N  21  
XL6  C13  C10  SING  Y  N  22  
XL6  C12  N1   DOUB  Y  N  23  
XL6  C15  N4   SING  N  N  24  
XL6  C10  O3   SING  N  N  25  
XL6  C10  C11  DOUB  Y  N  26  
XL6  N1   C11  SING  Y  N  27  
XL6  C2   C1   SING  Y  N  28  
XL6  C2   CL1  SING  N  N  29  
XL6  C1   O1   SING  N  N  30  
XL6  O1   C7   SING  N  N  31  
XL6  N4   C21  SING  N  N  32  
XL6  O4   C21  DOUB  N  N  33  
XL6  C21  C22  SING  N  N  34  
XL6  C22  C23  SING  N  N  35  
XL6  C6   H1   SING  N  N  36  
XL6  C7   H2   SING  N  N  37  
XL6  C7   H3   SING  N  N  38  
XL6  C7   H4   SING  N  N  39  
XL6  C8   H5   SING  N  N  40  
XL6  C8   H6   SING  N  N  41  
XL6  C8   H7   SING  N  N  42  
XL6  C9   H8   SING  N  N  43  
XL6  C9   H9   SING  N  N  44  
XL6  C11  H10  SING  N  N  45  
XL6  C13  H11  SING  N  N  46  
XL6  N3   H12  SING  N  N  47  
XL6  C16  H13  SING  N  N  48  
XL6  C17  H14  SING  N  N  49  
XL6  C18  H15  SING  N  N  50  
XL6  C20  H16  SING  N  N  51  
XL6  C20  H17  SING  N  N  52  
XL6  C20  H18  SING  N  N  53  
XL6  N4   H19  SING  N  N  54  
XL6  C22  H20  SING  N  N  55  
XL6  C22  H21  SING  N  N  56  
XL6  C23  H22  SING  N  N  57  
XL6  C23  H23  SING  N  N  58  
XL6  C23  H24  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XL6  SMILES            ACDLabs               12.01  "c1(OC)c(Cl)c(c(c(c1)OC)Cl)COc2cnc(nc2)Nc3c(NC(CC)=O)cccc3C"  
XL6  InChI             InChI                 1.03   "InChI=1S/C23H24Cl2N4O4/c1-5-19(30)28-16-8-6-7-13(2)22(16)29-23-26-10-14(11-27-23)33-12-15-20(24)17(31-3)9-18(32-4)21(15)25/h6-11H,5,12H2,1-4H3,(H,28,30)(H,26,27,29)"  
XL6  InChIKey          InChI                 1.03   HPDWTQKRQUCMTC-UHFFFAOYSA-N  
XL6  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)Nc1cccc(C)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"  
XL6  SMILES            CACTVS                3.385  "CCC(=O)Nc1cccc(C)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"  
XL6  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCC(=O)Nc1cccc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)C"  
XL6  SMILES            "OpenEye OEToolkits"  2.0.6  "CCC(=O)Nc1cccc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XL6  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)-3-methylphenyl]propanamide"  
XL6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3-methyl-phenyl]propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XL6  "Create component"  2017-10-28  RCSB  
XL6  "Initial release"   2019-07-10  RCSB  
##
