data_1S7
#

_chem_comp.id                                   1S7
_chem_comp.name                                 "(2R)-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H16 N2 O5 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Cefoxitin, bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-05-15
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       368.428
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1S7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4KEN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1S7  C     C     C  0  1  N  N  N  24.248  6.121   9.377   0.975  -3.139  -2.210  C     1S7   1  
1S7  N     N     N  0  1  N  N  N  26.641  4.987   9.005  -0.527  -0.958  -1.170  N     1S7   2  
1S7  O     O     O  0  1  N  N  N  24.806  6.284   8.054   1.494  -2.177  -1.290  O     1S7   3  
1S7  S     S     S  0  1  Y  N  N  28.488  4.617  12.781  -5.104   0.050   0.168  S     1S7   4  
1S7  C1    C1    C  0  1  N  N  S  25.909  5.410   7.802   0.515  -1.639  -0.398  C1    1S7   5  
1S7  O1    O1    O  0  1  N  N  N  25.551  3.075   9.364  -1.628  -0.407   0.676  O1    1S7   6  
1S7  S1    S1    S  0  1  N  N  N  26.350  6.874   5.563   2.535  -1.467   1.438  S1    1S7   7  
1S7  C2    C2    C  0  1  N  N  N  26.433  3.849   9.631  -1.561  -0.371  -0.535  C2    1S7   8  
1S7  N2    N2    N  0  1  N  N  N  27.740  6.938   7.749   1.695   0.483  -0.219  N2    1S7   9  
1S7  C3    C3    C  0  1  N  N  N  27.266  3.455  10.830  -2.634   0.329  -1.328  C3    1S7  10  
1S7  C4    C4    C  0  1  Y  N  N  28.415  4.346  11.092  -3.665   0.896  -0.387  C4    1S7  11  
1S7  O4    O4    O  0  1  N  N  N  26.284  3.394   6.660  -1.289  -2.963   0.336  O4    1S7  12  
1S7  C5    C5    C  0  1  Y  N  N  29.458  4.893  10.370  -3.628   2.115   0.151  C5    1S7  13  
1S7  O5    O5    O  0  1  N  N  N  30.529  8.347   8.487   3.983   3.014  -0.730  O5    1S7  14  
1S7  C6    C6    C  0  1  Y  N  N  30.269  5.636  11.205  -4.689   2.417   0.987  C6    1S7  15  
1S7  O6    O6    O  0  1  N  N  N  28.731  9.350   9.117   2.265   2.466  -2.022  O6    1S7  16  
1S7  C7    C7    C  0  1  Y  N  N  29.900  5.607  12.552  -5.588   1.442   1.128  C7    1S7  17  
1S7  C8    C8    C  0  1  N  N  R  26.999  6.014   6.955   1.183  -0.641   0.549  C8    1S7  18  
1S7  C9    C9    C  0  1  N  N  N  27.928  7.333   4.883   3.402  -0.044   2.179  C9    1S7  19  
1S7  C10   C10   C  0  1  N  N  N  28.850  7.992   5.905   3.756   0.892   1.041  C10   1S7  20  
1S7  C11   C11   C  0  1  N  N  N  29.793  8.866   5.466   4.947   1.480   1.000  C11   1S7  21  
1S7  C13   C13   C  0  1  N  N  N  28.626  7.763   7.308   2.769   1.141  -0.018  C13   1S7  22  
1S7  C14   C14   C  0  1  N  N  N  25.486  4.180   7.085  -0.101  -2.757   0.403  C14   1S7  23  
1S7  C15   C15   C  0  1  N  N  N  29.335  8.539   8.355   3.048   2.270  -0.945  C15   1S7  24  
1S7  H     H     H  0  1  N  N  N  23.407  6.818   9.509   0.627  -4.015  -1.662  H     1S7  25  
1S7  HA    HA    H  0  1  N  N  N  23.891  5.088   9.499   0.144  -2.702  -2.763  HA    1S7  26  
1S7  HB    HB    H  0  1  N  N  N  25.022  6.333  10.130   1.760  -3.435  -2.907  HB    1S7  27  
1S7  HN    HN    H  0  1  N  N  N  27.340  5.602   9.370  -0.474  -0.930  -2.138  HN    1S7  28  
1S7  H3    H3    H  0  1  N  N  N  26.616  3.461  11.718  -2.187   1.137  -1.908  H3    1S7  29  
1S7  H3A   H3A   H  0  1  N  N  N  27.650  2.438  10.663  -3.109  -0.382  -2.003  H3A   1S7  30  
1S7  H5    H5    H  0  1  N  N  N  29.616  4.759   9.310  -2.830   2.815  -0.050  H5    1S7  31  
1S7  H6    H6    H  0  1  N  N  N  31.120  6.195  10.845  -4.781   3.369   1.488  H6    1S7  32  
1S7  HO6   HO6   H  0  1  N  N  N  29.348  9.724   9.735   2.486   3.213  -2.595  HO6   1S7  33  
1S7  H7    H7    H  0  1  N  N  N  30.420  6.128  13.343  -6.477   1.498   1.738  H7    1S7  34  
1S7  H8    H8    H  0  1  N  N  N  27.651  5.219   6.564   0.447  -0.278   1.268  H8    1S7  35  
1S7  H9    H9    H  0  1  N  N  N  28.421  6.428   4.499   2.748   0.462   2.889  H9    1S7  36  
1S7  H9A   H9A   H  0  1  N  N  N  27.761  8.038   4.056   4.309  -0.381   2.681  H9A   1S7  37  
1S7  H11   H11   H  0  1  N  N  N  30.398  9.410   6.177   5.630   1.375   1.830  H11   1S7  38  
1S7  H11A  H11A  H  0  0  N  N  N  29.938  9.017   4.406   5.232   2.064   0.137  H11A  1S7  39  
1S7  H14   H14   H  0  1  N  N  N  24.432  3.989   6.943   0.519  -3.373   1.037  H14   1S7  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1S7  O    C     SING  N  N   1  
1S7  C    H     SING  N  N   2  
1S7  C    HA    SING  N  N   3  
1S7  C    HB    SING  N  N   4  
1S7  C1   N     SING  N  N   5  
1S7  N    C2    SING  N  N   6  
1S7  N    HN    SING  N  N   7  
1S7  C1   O     SING  N  N   8  
1S7  C4   S     SING  Y  N   9  
1S7  C7   S     SING  Y  N  10  
1S7  C8   C1    SING  N  N  11  
1S7  C14  C1    SING  N  N  12  
1S7  O1   C2    DOUB  N  N  13  
1S7  C9   S1    SING  N  N  14  
1S7  S1   C8    SING  N  N  15  
1S7  C2   C3    SING  N  N  16  
1S7  C8   N2    SING  N  N  17  
1S7  C13  N2    DOUB  N  N  18  
1S7  C3   C4    SING  N  N  19  
1S7  C3   H3    SING  N  N  20  
1S7  C3   H3A   SING  N  N  21  
1S7  C5   C4    DOUB  Y  N  22  
1S7  O4   C14   DOUB  N  N  23  
1S7  C5   C6    SING  Y  N  24  
1S7  C5   H5    SING  N  N  25  
1S7  C15  O5    DOUB  N  N  26  
1S7  C6   C7    DOUB  Y  N  27  
1S7  C6   H6    SING  N  N  28  
1S7  C15  O6    SING  N  N  29  
1S7  O6   HO6   SING  N  N  30  
1S7  C7   H7    SING  N  N  31  
1S7  C8   H8    SING  N  N  32  
1S7  C9   C10   SING  N  N  33  
1S7  C9   H9    SING  N  N  34  
1S7  C9   H9A   SING  N  N  35  
1S7  C11  C10   DOUB  N  N  36  
1S7  C10  C13   SING  N  N  37  
1S7  C11  H11   SING  N  N  38  
1S7  C11  H11A  SING  N  N  39  
1S7  C13  C15   SING  N  N  40  
1S7  C14  H14   SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1S7  SMILES            ACDLabs               12.01  "O=CC(OC)(NC(=O)Cc1sccc1)C2N=C(C(=O)O)\C(=C)CS2"  
1S7  InChI             InChI                 1.03   "InChI=1S/C15H16N2O5S2/c1-9-7-24-14(16-12(9)13(20)21)15(8-18,22-2)17-11(19)6-10-4-3-5-23-10/h3-5,8,14H,1,6-7H2,2H3,(H,17,19)(H,20,21)/t14-,15+/m1/s1"  
1S7  InChIKey          InChI                 1.03   BMQDZZSQSZJJQV-CABCVRRESA-N  
1S7  SMILES_CANONICAL  CACTVS                3.370  "CO[C@@](NC(=O)Cc1sccc1)(C=O)[C@H]2SCC(=C)C(=N2)C(O)=O"  
1S7  SMILES            CACTVS                3.370  "CO[C](NC(=O)Cc1sccc1)(C=O)[CH]2SCC(=C)C(=N2)C(O)=O"  
1S7  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CO[C@@](C=O)([C@@H]1N=C(C(=C)CS1)C(=O)O)NC(=O)Cc2cccs2"  
1S7  SMILES            "OpenEye OEToolkits"  1.7.6  "COC(C=O)(C1N=C(C(=C)CS1)C(=O)O)NC(=O)Cc2cccs2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1S7  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"  
1S7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R)-2-[(1S)-1-methoxy-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5-methylidene-2H-1,3-thiazine-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1S7  "Create component"  2013-05-15  RCSB  
1S7  "Initial release"   2014-10-29  RCSB  
1S7  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     1S7
_pdbx_chem_comp_synonyms.name        "Cefoxitin, bound form"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
