data_9E7
# 
_chem_comp.id                                    9E7 
_chem_comp.name                                  "N~6~-(sulfanylmethyl)-L-lysine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H16 N2 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-24 
_chem_comp.pdbx_modified_date                    2024-04-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        192.279 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     9E7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VK1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9E7 C   C1  C 0 1 N N N Y N Y 20.038 13.490 -31.009 -4.213 -0.094 0.130  C   9E7 1  
9E7 S   S1  S 0 1 N N N N N N 23.288 11.249 -33.236 5.214  0.775  0.314  S   9E7 2  
9E7 N   N1  N 0 1 N N N Y Y N 18.331 15.333 -30.423 -2.781 1.751  -0.540 N   9E7 3  
9E7 CA  C2  C 0 1 N N S Y N N 19.316 14.839 -31.377 -2.913 0.288  -0.530 CA  9E7 4  
9E7 CB  C3  C 0 1 N N N N N N 20.401 15.895 -31.561 -1.746 -0.324 0.247  CB  9E7 5  
9E7 CG  C4  C 0 1 N N N N N N 21.096 15.809 -32.944 -0.437 -0.041 -0.492 CG  9E7 6  
9E7 CD  C5  C 0 1 N N N N N N 22.421 15.027 -32.947 0.730  -0.654 0.286  CD  9E7 7  
9E7 CE  C6  C 0 1 N N N N N N 22.610 14.245 -34.250 2.040  -0.371 -0.453 CE  9E7 8  
9E7 NZ  N2  N 0 1 N N N N N N 21.631 13.107 -34.247 3.160  -0.959 0.293  NZ  9E7 9  
9E7 O   O1  O 0 1 N N N Y N Y 19.583 12.460 -31.531 -4.777 0.692  0.854  O   9E7 10 
9E7 C1  C7  C 0 1 N N N N N N 22.225 11.798 -34.621 4.437  -0.706 -0.388 C1  9E7 11 
9E7 OXT O2  O 0 1 N Y N Y N Y 19.826 13.051 -29.778 -4.746 -1.306 -0.090 O1  9E7 12 
9E7 H1  H1  H 0 1 N N N N N N 23.742 10.113 -33.677 6.353  0.883  -0.393 H1  9E7 13 
9E7 H2  H2  H 0 1 N Y N Y Y N 17.615 14.646 -30.296 -3.504 2.176  -1.101 H2  9E7 14 
9E7 H   H3  H 0 1 N N N Y Y N 18.778 15.514 -29.547 -2.788 2.121  0.399  H3  9E7 15 
9E7 HA  H5  H 0 1 N N N Y N N 18.822 14.691 -32.349 -2.903 -0.084 -1.555 H5  9E7 16 
9E7 HB2 H6  H 0 1 N N N N N N 21.161 15.759 -30.777 -1.704 0.115  1.244  H6  9E7 17 
9E7 HB3 H7  H 0 1 N N N N N N 19.944 16.890 -31.459 -1.891 -1.401 0.330  H7  9E7 18 
9E7 HG2 H8  H 0 1 N N N N N N 21.301 16.833 -33.289 -0.480 -0.480 -1.488 H8  9E7 19 
9E7 HG3 H9  H 0 1 N N N N N N 20.406 15.317 -33.645 -0.292 1.036  -0.575 H9  9E7 20 
9E7 HD2 H10 H 0 1 N N N N N N 22.421 14.321 -32.104 0.773  -0.215 1.283  H10 9E7 21 
9E7 HD3 H11 H 0 1 N N N N N N 23.254 15.736 -32.832 0.585  -1.731 0.369  H11 9E7 22 
9E7 HE2 H12 H 0 1 N N N N N N 23.637 13.855 -34.307 1.997  -0.810 -1.450 H12 9E7 23 
9E7 HE3 H13 H 0 1 N N N N N N 22.418 14.901 -35.112 2.184  0.706  -0.536 H13 9E7 24 
9E7 HZ1 H14 H 0 1 N N N N N N 20.901 13.318 -34.897 3.017  -1.947 0.440  H14 9E7 25 
9E7 H17 H17 H 0 1 N N N N N N 21.427 11.061 -34.795 4.257  -0.553 -1.452 H17 9E7 26 
9E7 H18 H18 H 0 1 N N N N N N 22.828 11.908 -35.534 5.097  -1.562 -0.251 H18 9E7 27 
9E7 HXT H19 H 0 1 N Y N Y N Y 19.438 12.184 -29.813 -5.581 -1.506 0.356  H19 9E7 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9E7 C1  NZ  SING N N 1  
9E7 C1  S   SING N N 2  
9E7 CE  NZ  SING N N 3  
9E7 CE  CD  SING N N 4  
9E7 CD  CG  SING N N 5  
9E7 CG  CB  SING N N 6  
9E7 CB  CA  SING N N 7  
9E7 O   C   DOUB N N 8  
9E7 CA  C   SING N N 9  
9E7 CA  N   SING N N 10 
9E7 C   OXT SING N N 11 
9E7 S   H1  SING N N 12 
9E7 N   H2  SING N N 13 
9E7 N   H   SING N N 14 
9E7 CA  HA  SING N N 15 
9E7 CB  HB2 SING N N 16 
9E7 CB  HB3 SING N N 17 
9E7 CG  HG2 SING N N 18 
9E7 CG  HG3 SING N N 19 
9E7 CD  HD2 SING N N 20 
9E7 CD  HD3 SING N N 21 
9E7 CE  HE2 SING N N 22 
9E7 CE  HE3 SING N N 23 
9E7 NZ  HZ1 SING N N 24 
9E7 C1  H17 SING N N 25 
9E7 C1  H18 SING N N 26 
9E7 OXT HXT SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9E7 SMILES           ACDLabs              12.01 "C(O)(C(N)CCCCNCS)=O"                                                                  
9E7 InChI            InChI                1.03  "InChI=1S/C7H16N2O2S/c8-6(7(10)11)3-1-2-4-9-5-12/h6,9,12H,1-5,8H2,(H,10,11)/t6-/m0/s1" 
9E7 InChIKey         InChI                1.03  IEEWMGZMRLQVDH-LURJTMIESA-N                                                            
9E7 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCNCS)C(O)=O"                                                               
9E7 SMILES           CACTVS               3.385 "N[CH](CCCCNCS)C(O)=O"                                                                 
9E7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CCNCS)C[C@@H](C(=O)O)N"                                                             
9E7 SMILES           "OpenEye OEToolkits" 2.0.6 "C(CCNCS)CC(C(=O)O)N"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9E7 "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-(sulfanylmethyl)-L-lysine"                        
9E7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-6-(sulfanylmethylamino)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9E7 "Create component"       2017-04-24 RCSB 
9E7 "Initial release"        2018-04-25 RCSB 
9E7 "Modify backbone"        2023-11-03 PDBE 
9E7 "Modify one letter code" 2024-04-24 PDBE 
# 
