data_KD7
#

_chem_comp.id                                   KD7
_chem_comp.name                                 "N-(3-phenylpropanoyl)-3-(1,3-thiazol-4-yl)-L-alanyl-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-valinamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H42 N8 O4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-11-20
_chem_comp.pdbx_modified_date                   2019-09-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       678.868
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KD7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6N4T
_chem_comp.pdbx_subcomponent_list               "HCI KCJ VAL KCM"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KD7  C18  C17  C  0  1  N  N  N  -18.246   -6.883  30.592   4.599   0.114  -0.276  C1      HCI   1  
KD7  O19  O2   O  0  1  N  N  N  -18.673   -5.733  30.668   4.741  -0.965   0.258  O1      HCI   2  
KD7  C20  C3   C  0  1  N  N  N  -18.473   -7.890  31.696   5.804   0.885  -0.749  C2      HCI   3  
KD7  C21  C4   C  0  1  N  N  N  -19.826   -7.693  32.391   7.074   0.090  -0.437  C3      HCI   4  
KD7  C22  C5   C  0  1  Y  N  N  -21.019   -7.975  31.498   8.279   0.861  -0.910  "C1'"   HCI   5  
KD7  C23  C18  C  0  1  Y  N  N  -22.205   -7.273  31.656   8.906   1.753  -0.060  "C2'"   HCI   6  
KD7  C24  C6   C  0  1  Y  N  N  -23.297   -7.533  30.844  10.011   2.461  -0.494  "C3'"   HCI   7  
KD7  C25  C19  C  0  1  Y  N  N  -23.218   -8.499  29.866  10.489   2.277  -1.778  "C4'"   HCI   8  
KD7  C26  C7   C  0  1  Y  N  N  -22.043   -9.195  29.691   9.862   1.385  -2.628  "C5'"   HCI   9  
KD7  C27  C20  C  0  1  Y  N  N  -20.952   -8.938  30.505   8.760   0.673  -2.192  "C6'"   HCI  10  
KD7  C13  C1   C  0  1  Y  N  N  -15.926   -4.112  30.179   3.789   0.402   3.144  C13     KCJ  11  
KD7  C15  C2   C  0  1  Y  N  N  -14.614   -5.827  32.047   4.494  -1.951   2.988  C15     KCJ  12  
KD7  C07  C13  C  0  1  N  N  N  -17.469   -7.314  27.099   0.985   0.283  -0.802  C07     KCJ  13  
KD7  C09  C14  C  0  1  N  N  S  -17.250   -6.508  28.382   2.191  -0.131   0.002  C09     KCJ  14  
KD7  C11  C15  C  0  1  N  N  N  -15.790   -6.046  28.446   1.940   0.160   1.483  C11     KCJ  15  
KD7  C12  C16  C  0  1  Y  N  N  -15.489   -5.541  29.857   3.093  -0.365   2.300  C12     KCJ  16  
KD7  N16  N2   N  0  1  Y  N  N  -14.805   -6.496  30.788   3.496  -1.618   2.241  N16     KCJ  17  
KD7  N17  N3   N  0  1  N  N  N  -17.555   -7.329  29.538   3.363   0.622  -0.452  N17     KCJ  18  
KD7  O08  O1   O  0  1  N  N  N  -16.996   -8.443  26.995   1.095   1.124  -1.669  O08     KCJ  19  
KD7  S14  S1   S  0  1  Y  N  N  -15.319   -4.152  31.885   5.034  -0.600   3.886  S14     KCJ  20  
KD7  N06  N1   N  0  1  N  N  N  -18.175   -6.735  26.125  -0.214  -0.281  -0.558  N       VAL  21  
KD7  C04  C12  C  0  1  N  N  S  -18.394   -7.442  24.875  -1.386   0.121  -1.339  CA      VAL  22  
KD7  C28  C8   C  0  1  N  N  N  -17.066   -7.453  24.118  -2.636  -0.137  -0.539  C       VAL  23  
KD7  O29  O3   O  0  1  N  N  N  -16.219   -6.592  24.338  -2.624  -0.952   0.359  O       VAL  24  
KD7  C02  C10  C  0  1  N  N  N  -19.543   -6.852  24.034  -1.435  -0.687  -2.638  CB      VAL  25  
KD7  C01  C9   C  0  1  N  N  N  -20.860   -6.878  24.799  -2.592  -0.189  -3.505  CG1     VAL  26  
KD7  C03  C11  C  0  1  N  N  N  -19.225   -5.444  23.554  -0.117  -0.513  -3.397  CG2     VAL  27  
KD7  C31  C21  C  0  1  N  N  S  -15.638   -8.604  22.503  -4.951   0.373   0.028  C31     KCM  28  
KD7  C33  C22  C  0  1  N  N  N  -15.055   -9.987  22.788  -5.834   1.617  -0.081  C33     KCM  29  
KD7  C34  C23  C  0  1  N  N  N  -14.562  -10.149  24.222  -5.087   2.824   0.491  C34     KCM  30  
KD7  C35  C24  C  0  1  N  N  N  -14.188  -11.584  24.582  -5.970   4.069   0.383  C35     KCM  31  
KD7  C37  C25  C  0  1  N  N  N  -13.136  -12.671  26.542  -5.855   6.461   0.941  C37     KCM  32  
KD7  C40  C26  C  0  1  N  N  S  -15.810   -8.332  21.006  -5.741  -0.855  -0.429  C40     KCM  33  
KD7  C42  C27  C  0  1  Y  N  N  -16.227   -6.908  20.663  -4.871  -2.081  -0.322  C42     KCM  34  
KD7  C44  C28  C  0  1  Y  N  N  -17.513   -5.047  19.880  -3.794  -3.755   0.726  C44     KCM  35  
KD7  C45  C29  C  0  1  Y  N  N  -18.588   -4.321  19.371  -3.323  -4.578   1.769  C45     KCM  36  
KD7  C46  C30  C  0  1  Y  N  N  -18.473   -2.947  19.226  -2.529  -5.650   1.497  C46     KCM  37  
KD7  C47  C31  C  0  1  Y  N  N  -17.287   -2.301  19.518  -2.167  -5.952   0.192  C47     KCM  38  
KD7  C48  C32  C  0  1  Y  N  N  -16.212   -3.007  20.029  -2.611  -5.166  -0.847  C48     KCM  39  
KD7  C49  C33  C  0  1  Y  N  N  -16.332   -4.383  20.201  -3.419  -4.061  -0.587  C49     KCM  40  
KD7  N30  N4   N  0  1  N  N  N  -16.884   -8.445  23.247  -3.769   0.536  -0.822  N30     KCM  41  
KD7  N36  N5   N  0  1  N  N  N  -13.790  -11.495  25.993  -5.256   5.224   0.931  N36     KCM  42  
KD7  N38  N6   N  0  1  N  N  N  -12.591  -12.565  27.735  -7.124   6.615   0.436  N38     KCM  43  
KD7  N39  N7   N  0  1  N  N  N  -13.115  -13.800  25.862  -5.219   7.489   1.428  N39     KCM  44  
KD7  N43  N8   N  0  1  Y  N  N  -17.475   -6.424  20.116  -4.579  -2.662   0.780  N43     KCM  45  
KD7  O41  O4   O  0  1  N  N  N  -14.525   -8.412  20.396  -6.894  -1.015   0.400  O41     KCM  46  
KD7  S50  S2   S  0  1  Y  N  N  -15.107   -5.475  20.821  -4.158  -2.872  -1.655  S50     KCM  47  
KD7  H3   H3   H  0  1  N  N  N  -18.440   -8.902  31.265   5.733   1.048  -1.825  H21     HCI  48  
KD7  H4   H4   H  0  1  N  N  N  -17.672   -7.783  32.443   5.844   1.847  -0.239  H22     HCI  49  
KD7  H5   H5   H  0  1  N  N  N  -19.890   -6.651  32.737   7.145  -0.072   0.639  H31     HCI  50  
KD7  H6   H6   H  0  1  N  N  N  -19.873   -8.370  33.257   7.034  -0.872  -0.948  H32     HCI  51  
KD7  H20  H20  H  0  1  N  N  N  -22.278   -6.515  32.421   8.532   1.897   0.943  "H2'"   HCI  52  
KD7  H7   H7   H  0  1  N  N  N  -24.213   -6.976  30.978  10.501   3.158   0.170  "H3'"   HCI  53  
KD7  H21  H21  H  0  1  N  N  N  -24.073   -8.709  29.240  11.353   2.830  -2.117  "H4'"   HCI  54  
KD7  H8   H8   H  0  1  N  N  N  -21.972   -9.944  28.916  10.235   1.242  -3.631  "H5'"   HCI  55  
KD7  H22  H22  H  0  1  N  N  N  -20.038   -9.495  30.363   8.271  -0.024  -2.856  "H6'"   HCI  56  
KD7  H1   H1   H  0  1  N  N  N  -16.421   -3.349  29.596   3.622   1.452   3.334  H1      KCJ  57  
KD7  H2   H2   H  0  1  N  N  N  -14.141   -6.240  32.926   4.925  -2.940   3.039  H2      KCJ  58  
KD7  H17  H17  H  0  1  N  N  N  -17.904   -5.624  28.364   2.369  -1.198  -0.133  H17     KCJ  59  
KD7  H18  H18  H  0  1  N  N  N  -15.126   -6.889  28.207   1.850   1.237   1.631  H18     KCJ  60  
KD7  H19  H19  H  0  1  N  N  N  -15.628   -5.234  27.721   1.019  -0.328   1.799  H19     KCJ  61  
KD7  H36  H36  H  0  1  N  N  N  -17.232   -8.276  29.547   3.249   1.485  -0.880  H36     KCJ  62  
KD7  H35  H35  H  0  1  N  N  N  -18.552   -5.818  26.255  -0.301  -0.953   0.136  H       VAL  63  
KD7  H16  H16  H  0  1  N  N  N  -18.655   -8.486  25.104  -1.318   1.183  -1.575  HA      VAL  64  
KD7  H12  H12  H  0  1  N  N  N  -19.661   -7.489  23.145  -1.583  -1.741  -2.404  HB      VAL  65  
KD7  H10  H10  H  0  1  N  N  N  -20.790   -6.213  25.672  -2.675  -0.814  -4.394  HG11    VAL  66  
KD7  H11  H11  H  0  1  N  N  N  -21.673   -6.535  24.142  -3.521  -0.241  -2.937  HG12    VAL  67  
KD7  H9   H9   H  0  1  N  N  N  -21.069   -7.904  25.136  -2.406   0.843  -3.802  HG13    VAL  68  
KD7  H13  H13  H  0  1  N  N  N  -18.272   -5.450  23.005   0.031   0.542  -3.630  HG21    VAL  69  
KD7  H14  H14  H  0  1  N  N  N  -20.028   -5.093  22.889   0.707  -0.867  -2.779  HG22    VAL  70  
KD7  H15  H15  H  0  1  N  N  N  -19.145   -4.771  24.420  -0.152  -1.088  -4.322  HG23    VAL  71  
KD7  H23  H23  H  0  1  N  N  N  -14.919   -7.865  22.885  -4.637   0.239   1.063  H23     KCM  72  
KD7  H24  H24  H  0  1  N  N  N  -15.834  -10.740  22.599  -6.074   1.802  -1.128  H24     KCM  73  
KD7  H25  H25  H  0  1  N  N  N  -14.208  -10.156  22.106  -6.754   1.460   0.481  H25     KCM  74  
KD7  H26  H26  H  0  1  N  N  N  -13.674   -9.514  24.358  -4.847   2.639   1.538  H26     KCM  75  
KD7  H27  H27  H  0  1  N  N  N  -15.359   -9.816  24.903  -4.167   2.981  -0.070  H27     KCM  76  
KD7  H28  H28  H  0  1  N  N  N  -15.049  -12.257  24.459  -6.210   4.253  -0.664  H28     KCM  77  
KD7  H29  H29  H  0  1  N  N  N  -13.353  -11.940  23.960  -6.891   3.911   0.944  H29     KCM  78  
KD7  H30  H30  H  0  1  N  N  N  -16.516   -9.053  20.567  -6.054  -0.721  -1.464  H30     KCM  79  
KD7  H31  H31  H  0  1  N  N  N  -19.502   -4.824  19.092  -3.594  -4.357   2.791  H31     KCM  80  
KD7  H32  H32  H  0  1  N  N  N  -19.321   -2.374  18.880  -2.175  -6.271   2.306  H32     KCM  81  
KD7  H33  H33  H  0  1  N  N  N  -17.198   -1.238  19.346  -1.536  -6.806  -0.009  H33     KCM  82  
KD7  H34  H34  H  0  1  N  N  N  -15.295   -2.499  20.290  -2.329  -5.402  -1.863  H34     KCM  83  
KD7  H37  H37  H  0  1  N  N  N  -17.624   -9.101  23.098  -3.801   1.130  -1.589  H37     KCM  84  
KD7  H38  H38  H  0  1  N  N  N  -13.959  -10.676  26.542  -4.360   5.116   1.287  H38     KCM  85  
KD7  H39  H39  H  0  1  N  N  N  -12.636  -11.697  28.230  -7.598   5.850   0.073  H39     KCM  86  
KD7  H40  H40  H  0  1  N  N  N  -12.132  -13.352  28.147  -7.547   7.488   0.443  H40     KCM  87  
KD7  H41  H41  H  0  1  N  N  N  -12.647  -14.529  26.361  -5.641   8.362   1.435  H41     KCM  88  
KD7  H42  H42  H  0  1  N  N  N  -14.156   -9.275  20.546  -6.690  -1.139   1.338  H42     KCM  89  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KD7  C46  C45  DOUB  Y  N   1  
KD7  C46  C47  SING  Y  N   2  
KD7  C45  C44  SING  Y  N   3  
KD7  C47  C48  DOUB  Y  N   4  
KD7  C44  N43  SING  Y  N   5  
KD7  C44  C49  DOUB  Y  N   6  
KD7  C48  C49  SING  Y  N   7  
KD7  N43  C42  DOUB  Y  N   8  
KD7  C49  S50  SING  Y  N   9  
KD7  O41  C40  SING  N  N  10  
KD7  C42  S50  SING  Y  N  11  
KD7  C42  C40  SING  N  N  12  
KD7  C40  C31  SING  N  N  13  
KD7  C31  C33  SING  N  N  14  
KD7  C31  N30  SING  N  N  15  
KD7  C33  C34  SING  N  N  16  
KD7  N30  C28  SING  N  N  17  
KD7  C03  C02  SING  N  N  18  
KD7  C02  C01  SING  N  N  19  
KD7  C02  C04  SING  N  N  20  
KD7  C28  O29  DOUB  N  N  21  
KD7  C28  C04  SING  N  N  22  
KD7  C34  C35  SING  N  N  23  
KD7  C35  N36  SING  N  N  24  
KD7  C04  N06  SING  N  N  25  
KD7  N39  C37  DOUB  N  N  26  
KD7  N36  C37  SING  N  N  27  
KD7  N06  C07  SING  N  N  28  
KD7  C37  N38  SING  N  N  29  
KD7  O08  C07  DOUB  N  N  30  
KD7  C07  C09  SING  N  N  31  
KD7  C09  C11  SING  N  N  32  
KD7  C09  N17  SING  N  N  33  
KD7  C11  C12  SING  N  N  34  
KD7  N17  C18  SING  N  N  35  
KD7  C26  C25  DOUB  Y  N  36  
KD7  C26  C27  SING  Y  N  37  
KD7  C12  C13  DOUB  Y  N  38  
KD7  C12  N16  SING  Y  N  39  
KD7  C25  C24  SING  Y  N  40  
KD7  C13  S14  SING  Y  N  41  
KD7  C27  C22  DOUB  Y  N  42  
KD7  C18  O19  DOUB  N  N  43  
KD7  C18  C20  SING  N  N  44  
KD7  N16  C15  DOUB  Y  N  45  
KD7  C24  C23  DOUB  Y  N  46  
KD7  C22  C23  SING  Y  N  47  
KD7  C22  C21  SING  N  N  48  
KD7  C20  C21  SING  N  N  49  
KD7  S14  C15  SING  Y  N  50  
KD7  C13  H1   SING  N  N  51  
KD7  C15  H2   SING  N  N  52  
KD7  C20  H3   SING  N  N  53  
KD7  C20  H4   SING  N  N  54  
KD7  C21  H5   SING  N  N  55  
KD7  C21  H6   SING  N  N  56  
KD7  C24  H7   SING  N  N  57  
KD7  C26  H8   SING  N  N  58  
KD7  C01  H9   SING  N  N  59  
KD7  C01  H10  SING  N  N  60  
KD7  C01  H11  SING  N  N  61  
KD7  C02  H12  SING  N  N  62  
KD7  C03  H13  SING  N  N  63  
KD7  C03  H14  SING  N  N  64  
KD7  C03  H15  SING  N  N  65  
KD7  C04  H16  SING  N  N  66  
KD7  C09  H17  SING  N  N  67  
KD7  C11  H18  SING  N  N  68  
KD7  C11  H19  SING  N  N  69  
KD7  C23  H20  SING  N  N  70  
KD7  C25  H21  SING  N  N  71  
KD7  C27  H22  SING  N  N  72  
KD7  C31  H23  SING  N  N  73  
KD7  C33  H24  SING  N  N  74  
KD7  C33  H25  SING  N  N  75  
KD7  C34  H26  SING  N  N  76  
KD7  C34  H27  SING  N  N  77  
KD7  C35  H28  SING  N  N  78  
KD7  C35  H29  SING  N  N  79  
KD7  C40  H30  SING  N  N  80  
KD7  C45  H31  SING  N  N  81  
KD7  C46  H32  SING  N  N  82  
KD7  C47  H33  SING  N  N  83  
KD7  C48  H34  SING  N  N  84  
KD7  N06  H35  SING  N  N  85  
KD7  N17  H36  SING  N  N  86  
KD7  N30  H37  SING  N  N  87  
KD7  N36  H38  SING  N  N  88  
KD7  N38  H39  SING  N  N  89  
KD7  N38  H40  SING  N  N  90  
KD7  N39  H41  SING  N  N  91  
KD7  O41  H42  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KD7  SMILES            ACDLabs               12.01  "C(=O)(CCc1ccccc1)NC(C(=O)NC(C(=O)NC(CCCNC(\N)=N)C(c2sc3c(n2)cccc3)O)C(C)C)Cc4cscn4"  
KD7  InChI             InChI                 1.03   "InChI=1S/C33H42N8O4S2/c1-20(2)28(41-30(44)25(17-22-18-46-19-37-22)38-27(42)15-14-21-9-4-3-5-10-21)31(45)39-24(12-8-16-36-33(34)35)29(43)32-40-23-11-6-7-13-26(23)47-32/h3-7,9-11,13,18-20,24-25,28-29,43H,8,12,14-17H2,1-2H3,(H,38,42)(H,39,45)(H,41,44)(H4,34,35,36)/t24-,25-,28-,29-/m0/s1"  
KD7  InChIKey          InChI                 1.03   AHZGKBJWEMYHLE-NSIYGSDQSA-N  
KD7  SMILES_CANONICAL  CACTVS                3.385  "CC(C)[C@H](NC(=O)[C@H](Cc1cscn1)NC(=O)CCc2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)[C@H](O)c3sc4ccccc4n3"  
KD7  SMILES            CACTVS                3.385  "CC(C)[CH](NC(=O)[CH](Cc1cscn1)NC(=O)CCc2ccccc2)C(=O)N[CH](CCCNC(N)=N)[CH](O)c3sc4ccccc4n3"  
KD7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[H]/N=C(/N)\NCCC[C@@H]([C@@H](c1nc2ccccc2s1)O)NC(=O)[C@H](C(C)C)NC(=O)[C@H](Cc3cscn3)NC(=O)CCc4ccccc4"  
KD7  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)C(C(=O)NC(CCCNC(=N)N)C(c1nc2ccccc2s1)O)NC(=O)C(Cc3cscn3)NC(=O)CCc4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KD7  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-(3-phenylpropanoyl)-3-(1,3-thiazol-4-yl)-L-alanyl-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-valinamide"  
KD7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-oxidanyl-pentan-2-yl]-3-methyl-2-[[(2~{S})-2-(3-phenylpropanoylamino)-3-(1,3-thiazol-4-yl)propanoyl]amino]butanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KD7  "Create component"  2018-11-20  RCSB  
KD7  "Initial release"   2019-10-02  RCSB  
##
