data_6J9
# 
_chem_comp.id                                    6J9 
_chem_comp.name                                  "4-(piperazin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-14 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        203.244 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6J9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J5X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6J9 C4  C1  C 0 1 Y N N N N N -3.538 51.292 -0.983 -0.142 0.526  -0.144 C4  6J9 1  
6J9 C5  C2  C 0 1 Y N N N N N -3.607 50.093 -0.091 -1.231 -0.358 -0.148 C5  6J9 2  
6J9 C6  C3  C 0 1 Y N N N N N -2.355 49.362 0.137  -2.522 0.161  0.065  C6  6J9 3  
6J9 N1  N1  N 0 1 N N N Y Y Y -6.882 53.811 -1.677 3.859  -0.411 0.381  N1  6J9 4  
6J9 C7  C4  C 0 1 Y N N N N N -4.599 49.400 0.651  -1.395 -1.799 -0.331 C7  6J9 5  
6J9 C8  C5  C 0 1 Y N N N N N -3.984 48.327 1.271  -2.709 -2.056 -0.224 C8  6J9 6  
6J9 N2  N2  N 0 1 Y N N N N N -2.320 51.605 -1.494 -0.379 1.819  0.062  N2  6J9 7  
6J9 C9  C6  C 0 1 Y N N N N N -1.212 50.887 -1.238 -1.607 2.263  0.258  C9  6J9 8  
6J9 N   N3  N 0 1 N N N N N N -4.644 52.108 -1.301 1.147  0.064  -0.343 N   6J9 9  
6J9 C1  C7  C 0 1 N N N N N N -5.912 51.561 -1.765 1.491  -0.976 0.637  C1  6J9 10 
6J9 C   C8  C 0 1 N N N N N N -4.519 53.556 -1.174 2.115  1.169  -0.296 C   6J9 11 
6J9 C2  C9  C 0 1 N N N N N N -5.533 54.201 -2.112 3.515  0.629  -0.598 C2  6J9 12 
6J9 C3  C10 C 0 1 N N N N N N -7.016 52.434 -1.169 2.891  -1.515 0.334  C3  6J9 13 
6J9 N4  N4  N 0 1 Y N N N N N -1.216 49.804 -0.446 -2.657 1.471  0.262  N4  6J9 14 
6J9 N3  N5  N 0 1 Y N N N N N -2.659 48.330 0.954  -3.393 -0.892 0.013  N3  6J9 15 
6J9 H1  H1  H 0 1 N Y N Y Y Y -7.163 54.436 -0.949 4.799  -0.748 0.236  H1  6J9 16 
6J9 H3  H3  H 0 1 N N N N N N -5.644 49.663 0.719  -0.611 -2.517 -0.517 H3  6J9 17 
6J9 H4  H4  H 0 1 N N N N N N -4.475 47.603 1.904  -3.159 -3.034 -0.312 H4  6J9 18 
6J9 H5  H5  H 0 1 N N N N N N -0.280 51.195 -1.689 -1.755 3.320  0.422  H5  6J9 19 
6J9 H6  H6  H 0 1 N N N N N N -5.958 51.591 -2.864 1.474  -0.551 1.640  H6  6J9 20 
6J9 H7  H7  H 0 1 N N N N N N -6.024 50.522 -1.421 0.766  -1.788 0.574  H7  6J9 21 
6J9 H8  H8  H 0 1 N N N N N N -3.502 53.869 -1.452 1.847  1.920  -1.038 H8  6J9 22 
6J9 H9  H9  H 0 1 N N N N N N -4.725 53.859 -0.137 2.106  1.619  0.697  H9  6J9 23 
6J9 H10 H10 H 0 1 N N N N N N -5.360 53.854 -3.141 4.239  1.442  -0.535 H10 6J9 24 
6J9 H11 H11 H 0 1 N N N N N N -5.432 55.296 -2.072 3.532  0.204  -1.602 H11 6J9 25 
6J9 H12 H12 H 0 1 N N N N N N -7.998 52.031 -1.457 2.900  -1.965 -0.659 H12 6J9 26 
6J9 H13 H13 H 0 1 N N N N N N -6.929 52.438 -0.072 3.159  -2.267 1.076  H13 6J9 27 
6J9 H14 H14 H 0 1 N N N N N N -1.998 47.656 1.283  -4.354 -0.825 0.127  H14 6J9 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6J9 C2 N1  SING N N 1  
6J9 C2 C   SING N N 2  
6J9 C1 N   SING N N 3  
6J9 C1 C3  SING N N 4  
6J9 N1 C3  SING N N 5  
6J9 N2 C9  DOUB Y N 6  
6J9 N2 C4  SING Y N 7  
6J9 N  C   SING N N 8  
6J9 N  C4  SING N N 9  
6J9 C9 N4  SING Y N 10 
6J9 C4 C5  DOUB Y N 11 
6J9 N4 C6  DOUB Y N 12 
6J9 C5 C6  SING Y N 13 
6J9 C5 C7  SING Y N 14 
6J9 C6 N3  SING Y N 15 
6J9 C7 C8  DOUB Y N 16 
6J9 N3 C8  SING Y N 17 
6J9 N1 H1  SING N N 18 
6J9 C7 H3  SING N N 19 
6J9 C8 H4  SING N N 20 
6J9 C9 H5  SING N N 21 
6J9 C1 H6  SING N N 22 
6J9 C1 H7  SING N N 23 
6J9 C  H8  SING N N 24 
6J9 C  H9  SING N N 25 
6J9 C2 H10 SING N N 26 
6J9 C2 H11 SING N N 27 
6J9 C3 H12 SING N N 28 
6J9 C3 H13 SING N N 29 
6J9 N3 H14 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6J9 SMILES           ACDLabs              12.01 "c2(c1c(ncc1)ncn2)N3CCNCC3"                                                                   
6J9 InChI            InChI                1.03  "InChI=1S/C10H13N5/c1-2-12-9-8(1)10(14-7-13-9)15-5-3-11-4-6-15/h1-2,7,11H,3-6H2,(H,12,13,14)" 
6J9 InChIKey         InChI                1.03  LZSXQBNNRGZPES-UHFFFAOYSA-N                                                                   
6J9 SMILES_CANONICAL CACTVS               3.385 "C1CN(CCN1)c2ncnc3[nH]ccc23"                                                                  
6J9 SMILES           CACTVS               3.385 "C1CN(CCN1)c2ncnc3[nH]ccc23"                                                                  
6J9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1c[nH]c2c1c(ncn2)N3CCNCC3"                                                                  
6J9 SMILES           "OpenEye OEToolkits" 2.0.4 "c1c[nH]c2c1c(ncn2)N3CCNCC3"                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6J9 "SYSTEMATIC NAME" ACDLabs              12.01 "4-(piperazin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine"  
6J9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "4-piperazin-1-yl-7~{H}-pyrrolo[2,3-d]pyrimidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6J9 "Create component" 2016-04-14 EBI  
6J9 "Initial release"  2016-07-20 RCSB 
6J9 "Modify backbone"  2023-11-03 PDBE 
# 
