data_BO9
#

_chem_comp.id                                   BO9
_chem_comp.name                                 "N1-[(1R)-1-(DIHYDROXYBORYL)ETHYL]-N2-[(TERT-BUTOXYCARBONYL)-D-GAMMA-GLUTAMYL]-N6-[(BENZYLOXY)CARBONYL-L-LYSINAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H41 B N4 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "BOC-GAMMA-D-GLU-L-LYS(CBZ)-D-BOROALA"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-04-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       580.436
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BO9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1Z6F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BO9  O36   O36   O  0  1  N  N  N  50.529   7.921  32.892  -5.609  -3.955   0.161  O36   BO9   1  
BO9  C35   C35   C  0  1  N  N  N  49.619   8.303  33.615  -5.885  -2.901  -0.377  C35   BO9   2  
BO9  O37   O37   O  0  1  N  N  N  49.866   9.405  34.553  -6.516  -2.897  -1.566  O37   BO9   3  
BO9  C38   C38   C  0  1  N  N  N  50.682  10.563  34.299  -6.866  -4.152  -2.206  C38   BO9   4  
BO9  C41   C41   C  0  1  N  N  N  50.261  11.233  32.994  -7.803  -4.946  -1.294  C41   BO9   5  
BO9  C40   C40   C  0  1  N  N  N  50.465  11.543  35.447  -7.569  -3.868  -3.535  C40   BO9   6  
BO9  C39   C39   C  0  1  N  N  N  52.161  10.188  34.226  -5.596  -4.965  -2.465  C39   BO9   7  
BO9  N34   N34   N  0  1  N  N  N  48.424   7.706  33.563  -5.560  -1.736   0.218  N34   BO9   8  
BO9  C30   C30   C  0  1  N  N  S  47.268   8.083  34.377  -4.873  -1.741   1.512  C30   BO9   9  
BO9  C31   C31   C  0  1  N  N  N  47.538   7.965  35.884  -5.889  -1.855   2.619  C31   BO9  10  
BO9  O33   O33   O  0  1  N  N  N  47.805   6.844  36.380  -7.066  -1.926   2.354  O33   BO9  11  
BO9  O32   O32   O  0  1  N  N  N  47.491   9.009  36.576  -5.487  -1.879   3.899  O32   BO9  12  
BO9  C29   C29   C  0  1  N  N  N  46.114   7.158  33.958  -4.085  -0.440   1.676  C29   BO9  13  
BO9  C28   C28   C  0  1  N  N  N  46.109   6.844  32.461  -2.972  -0.382   0.628  C28   BO9  14  
BO9  C26   C26   C  0  1  N  N  N  44.734   6.794  31.819  -2.195   0.899   0.789  C26   BO9  15  
BO9  O27   O27   O  0  1  N  N  N  44.362   5.770  31.256  -2.502   1.689   1.657  O27   BO9  16  
BO9  N25   N25   N  0  1  N  N  N  43.982   7.897  31.870  -1.160   1.168  -0.031  N25   BO9  17  
BO9  C9    C9    C  0  1  N  N  S  42.666   7.968  31.244  -0.405   2.413   0.126  C9    BO9  18  
BO9  C7    C7    C  0  1  N  N  N  42.898   8.486  29.847  -1.100   3.520  -0.625  C7    BO9  19  
BO9  O8    O8    O  0  1  N  N  N  43.567   9.499  29.670  -2.125   3.290  -1.232  O8    BO9  20  
BO9  N6    N6    N  0  1  N  N  N  42.413   7.770  28.828  -0.583   4.764  -0.623  N6    BO9  21  
BO9  C4    C4    C  0  1  N  N  S  42.623   8.205  27.449  -1.258   5.840  -1.353  C4    BO9  22  
BO9  C5    C5    C  0  1  N  N  N  41.289   8.666  26.864  -0.226   6.645  -2.145  C5    BO9  23  
BO9  B1    B1    B  0  1  N  N  N  43.248   6.996  26.598  -1.990   6.785  -0.335  B1    BO9  24  
BO9  O3    O3    O  0  1  N  N  N  44.660   6.651  27.108  -3.333   6.519   0.041  O3    BO9  25  
BO9  O2    O2    O  0  1  N  N  N  42.369   5.746  26.675  -1.308   7.905   0.210  O2    BO9  26  
BO9  C10   C10   C  0  1  N  N  N  41.912   8.996  32.081   1.007   2.227  -0.432  C10   BO9  27  
BO9  C11   C11   C  0  1  N  N  N  40.411   8.779  32.182   1.756   1.192   0.410  C11   BO9  28  
BO9  C12   C12   C  0  1  N  N  N  39.855   9.729  33.247   3.168   1.006  -0.147  C12   BO9  29  
BO9  C13   C13   C  0  1  N  N  N  39.370   8.994  34.499   3.917  -0.030   0.695  C13   BO9  30  
BO9  N14   N14   N  0  1  N  N  N  40.218   9.385  35.619   5.269  -0.208   0.161  N14   BO9  31  
BO9  C15   C15   C  0  1  N  N  N  39.993  10.274  36.596   6.116  -1.077   0.747  C15   BO9  32  
BO9  O16   O16   O  0  1  N  N  N  40.819  10.473  37.477   5.757  -1.714   1.718  O16   BO9  33  
BO9  O17   O17   O  0  1  N  N  N  38.754  11.048  36.648   7.359  -1.241   0.256  O17   BO9  34  
BO9  C18   C18   C  0  1  N  N  N  38.581  12.208  35.828   8.271  -2.178   0.888  C18   BO9  35  
BO9  C19   C19   C  0  1  Y  N  N  37.876  13.322  36.569   9.586  -2.172   0.152  C19   BO9  36  
BO9  C24   C24   C  0  1  Y  N  N  38.168  14.650  36.255  10.587  -1.298   0.532  C24   BO9  37  
BO9  C23   C23   C  0  1  Y  N  N  37.529  15.692  36.928  11.793  -1.293  -0.143  C23   BO9  38  
BO9  C22   C22   C  0  1  Y  N  N  36.587  15.405  37.917  11.999  -2.162  -1.198  C22   BO9  39  
BO9  C21   C21   C  0  1  Y  N  N  36.290  14.078  38.233  10.998  -3.037  -1.578  C21   BO9  40  
BO9  C20   C20   C  0  1  Y  N  N  36.934  13.037  37.560   9.793  -3.045  -0.900  C20   BO9  41  
BO9  H411  1H41  H  0  0  N  N  N  50.893  12.130  32.797  -8.708  -4.367  -1.110  H411  BO9  42  
BO9  H412  2H41  H  0  0  N  N  N  50.274  10.519  32.137  -8.067  -5.888  -1.775  H412  BO9  43  
BO9  H413  3H41  H  0  0  N  N  N  49.173  11.480  32.985  -7.303  -5.148  -0.347  H413  BO9  44  
BO9  H401  1H40  H  0  0  N  N  N  51.097  12.440  35.250  -6.901  -3.302  -4.186  H401  BO9  45  
BO9  H402  2H40  H  0  0  N  N  N  49.390  11.795  35.603  -7.832  -4.810  -4.016  H402  BO9  46  
BO9  H403  3H40  H  0  0  N  N  N  50.656  11.088  36.447  -8.474  -3.288  -3.352  H403  BO9  47  
BO9  H391  1H39  H  0  0  N  N  N  52.793  11.085  34.029  -5.096  -5.168  -1.518  H391  BO9  48  
BO9  H392  2H39  H  0  0  N  N  N  52.492   9.644  35.141  -5.859  -5.907  -2.945  H392  BO9  49  
BO9  H393  3H39  H  0  0  N  N  N  52.344   9.383  33.475  -4.929  -4.400  -3.115  H393  BO9  50  
BO9  H34   H34   H  0  1  N  N  N  48.393   6.944  32.885  -5.780  -0.895  -0.211  H34   BO9  51  
BO9  H30   H30   H  0  1  N  N  N  47.021   9.156  34.202  -4.189  -2.588   1.558  H30   BO9  52  
BO9  H32   H32   H  0  1  N  N  N  47.658   8.936  37.508  -6.139  -1.953   4.610  H32   BO9  53  
BO9  H291  1H29  H  0  0  N  N  N  46.118   6.219  34.560  -3.647  -0.404   2.673  H291  BO9  54  
BO9  H292  2H29  H  0  0  N  N  N  45.132   7.577  34.279  -4.754   0.410   1.542  H292  BO9  55  
BO9  H281  1H28  H  0  0  N  N  N  46.762   7.563  31.914  -3.410  -0.419  -0.370  H281  BO9  56  
BO9  H282  2H28  H  0  0  N  N  N  46.659   5.894  32.265  -2.302  -1.232   0.762  H282  BO9  57  
BO9  H25   H25   H  0  1  N  N  N  44.405   8.672  32.378  -0.915   0.536  -0.725  H25   BO9  58  
BO9  H9    H9    H  0  1  N  N  N  42.107   7.004  31.192  -0.348   2.672   1.183  H9    BO9  59  
BO9  HN6   HN6   H  0  1  N  N  N  41.903   6.926  29.091   0.237   4.948  -0.138  HN6   BO9  60  
BO9  H4    H4    H  0  1  N  N  N  43.338   9.059  27.414  -1.988   5.410  -2.039  H4    BO9  61  
BO9  H51   1H5   H  0  1  N  N  N  41.449   8.997  25.811   0.504   7.074  -1.459  H51   BO9  62  
BO9  H52   2H5   H  0  1  N  N  N  40.496   7.885  26.947   0.282   5.989  -2.852  H52   BO9  63  
BO9  H53   3H5   H  0  1  N  N  N  40.800   9.451  27.487  -0.729   7.445  -2.688  H53   BO9  64  
BO9  HO3   HO3   H  0  1  N  N  N  45.029   5.935  26.604  -3.605   5.723  -0.436  HO3   BO9  65  
BO9  HO2   HO2   H  0  1  N  N  N  42.738   5.030  26.171  -1.928   8.347   0.805  HO2   BO9  66  
BO9  H101  1H10  H  0  0  N  N  N  42.358   9.060  33.100   0.948   1.882  -1.464  H101  BO9  67  
BO9  H102  2H10  H  0  0  N  N  N  42.125  10.024  31.707   1.540   3.178  -0.396  H102  BO9  68  
BO9  H111  1H11  H  0  0  N  N  N  39.895   8.888  31.199   1.815   1.537   1.442  H111  BO9  69  
BO9  H112  2H11  H  0  0  N  N  N  40.144   7.714  32.376   1.223   0.241   0.375  H112  BO9  70  
BO9  H121  1H12  H  0  0  N  N  N  40.599  10.516  33.508   3.109   0.661  -1.179  H121  BO9  71  
BO9  H122  2H12  H  0  0  N  N  N  39.050  10.375  32.825   3.701   1.956  -0.112  H122  BO9  72  
BO9  H131  1H13  H  0  0  N  N  N  38.286   9.162  34.702   3.976   0.316   1.727  H131  BO9  73  
BO9  H132  2H13  H  0  0  N  N  N  39.328   7.888  34.358   3.384  -0.980   0.659  H132  BO9  74  
BO9  H14   H14   H  0  1  N  N  N  41.136   8.958  35.741   5.555   0.300  -0.614  H14   BO9  75  
BO9  H181  1H18  H  0  0  N  N  N  39.552  12.554  35.405   8.434  -1.884   1.925  H181  BO9  76  
BO9  H182  2H18  H  0  0  N  N  N  38.055  11.957  34.877   7.842  -3.179   0.857  H182  BO9  77  
BO9  H24   H24   H  0  1  N  N  N  38.908  14.877  35.469  10.427  -0.619   1.356  H24   BO9  78  
BO9  H23   H23   H  0  1  N  N  N  37.767  16.739  36.678  12.575  -0.610   0.154  H23   BO9  79  
BO9  H22   H22   H  0  1  N  N  N  36.077  16.226  38.448  12.941  -2.157  -1.726  H22   BO9  80  
BO9  H21   H21   H  0  1  N  N  N  35.545  13.851  39.015  11.158  -3.715  -2.403  H21   BO9  81  
BO9  H20   H20   H  0  1  N  N  N  36.698  11.989  37.811   9.011  -3.728  -1.197  H20   BO9  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BO9  O36  C35   DOUB  N  N   1  
BO9  C35  O37   SING  N  N   2  
BO9  C35  N34   SING  N  N   3  
BO9  O37  C38   SING  N  N   4  
BO9  C38  C41   SING  N  N   5  
BO9  C38  C40   SING  N  N   6  
BO9  C38  C39   SING  N  N   7  
BO9  C41  H411  SING  N  N   8  
BO9  C41  H412  SING  N  N   9  
BO9  C41  H413  SING  N  N  10  
BO9  C40  H401  SING  N  N  11  
BO9  C40  H402  SING  N  N  12  
BO9  C40  H403  SING  N  N  13  
BO9  C39  H391  SING  N  N  14  
BO9  C39  H392  SING  N  N  15  
BO9  C39  H393  SING  N  N  16  
BO9  N34  C30   SING  N  N  17  
BO9  N34  H34   SING  N  N  18  
BO9  C30  C31   SING  N  N  19  
BO9  C30  C29   SING  N  N  20  
BO9  C30  H30   SING  N  N  21  
BO9  C31  O33   DOUB  N  N  22  
BO9  C31  O32   SING  N  N  23  
BO9  O32  H32   SING  N  N  24  
BO9  C29  C28   SING  N  N  25  
BO9  C29  H291  SING  N  N  26  
BO9  C29  H292  SING  N  N  27  
BO9  C28  C26   SING  N  N  28  
BO9  C28  H281  SING  N  N  29  
BO9  C28  H282  SING  N  N  30  
BO9  C26  O27   DOUB  N  N  31  
BO9  C26  N25   SING  N  N  32  
BO9  N25  C9    SING  N  N  33  
BO9  N25  H25   SING  N  N  34  
BO9  C9   C7    SING  N  N  35  
BO9  C9   C10   SING  N  N  36  
BO9  C9   H9    SING  N  N  37  
BO9  C7   O8    DOUB  N  N  38  
BO9  C7   N6    SING  N  N  39  
BO9  N6   C4    SING  N  N  40  
BO9  N6   HN6   SING  N  N  41  
BO9  C4   C5    SING  N  N  42  
BO9  C4   B1    SING  N  N  43  
BO9  C4   H4    SING  N  N  44  
BO9  C5   H51   SING  N  N  45  
BO9  C5   H52   SING  N  N  46  
BO9  C5   H53   SING  N  N  47  
BO9  B1   O3    SING  N  N  48  
BO9  B1   O2    SING  N  N  49  
BO9  O3   HO3   SING  N  N  50  
BO9  O2   HO2   SING  N  N  51  
BO9  C10  C11   SING  N  N  52  
BO9  C10  H101  SING  N  N  53  
BO9  C10  H102  SING  N  N  54  
BO9  C11  C12   SING  N  N  55  
BO9  C11  H111  SING  N  N  56  
BO9  C11  H112  SING  N  N  57  
BO9  C12  C13   SING  N  N  58  
BO9  C12  H121  SING  N  N  59  
BO9  C12  H122  SING  N  N  60  
BO9  C13  N14   SING  N  N  61  
BO9  C13  H131  SING  N  N  62  
BO9  C13  H132  SING  N  N  63  
BO9  N14  C15   SING  N  N  64  
BO9  N14  H14   SING  N  N  65  
BO9  C15  O16   DOUB  N  N  66  
BO9  C15  O17   SING  N  N  67  
BO9  O17  C18   SING  N  N  68  
BO9  C18  C19   SING  N  N  69  
BO9  C18  H181  SING  N  N  70  
BO9  C18  H182  SING  N  N  71  
BO9  C19  C24   DOUB  Y  N  72  
BO9  C19  C20   SING  Y  N  73  
BO9  C24  C23   SING  Y  N  74  
BO9  C24  H24   SING  N  N  75  
BO9  C23  C22   DOUB  Y  N  76  
BO9  C23  H23   SING  N  N  77  
BO9  C22  C21   SING  Y  N  78  
BO9  C22  H22   SING  N  N  79  
BO9  C21  C20   DOUB  Y  N  80  
BO9  C21  H21   SING  N  N  81  
BO9  C20  H20   SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BO9  SMILES            ACDLabs               10.04  "O=C(OC(C)(C)C)NC(C(=O)O)CCC(=O)NC(C(=O)NC(B(O)O)C)CCCCNC(=O)OCc1ccccc1"  
BO9  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H](NC(=O)[C@H](CCCCNC(=O)OCc1ccccc1)NC(=O)CC[C@H](NC(=O)OC(C)(C)C)C(O)=O)B(O)O"  
BO9  SMILES            CACTVS                3.341  "C[CH](NC(=O)[CH](CCCCNC(=O)OCc1ccccc1)NC(=O)CC[CH](NC(=O)OC(C)(C)C)C(O)=O)B(O)O"  
BO9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "B([C@@H](C)NC(=O)[C@H](CCCCNC(=O)OCc1ccccc1)NC(=O)CC[C@@H](C(=O)O)NC(=O)OC(C)(C)C)(O)O"  
BO9  SMILES            "OpenEye OEToolkits"  1.5.0  "B(C(C)NC(=O)C(CCCCNC(=O)OCc1ccccc1)NC(=O)CCC(C(=O)O)NC(=O)OC(C)(C)C)(O)O"  
BO9  InChI             InChI                 1.03   "InChI=1S/C26H41BN4O10/c1-17(27(38)39)29-22(33)19(12-8-9-15-28-24(36)40-16-18-10-6-5-7-11-18)30-21(32)14-13-20(23(34)35)31-25(37)41-26(2,3)4/h5-7,10-11,17,19-20,38-39H,8-9,12-16H2,1-4H3,(H,28,36)(H,29,33)(H,30,32)(H,31,37)(H,34,35)/t17-,19+,20+/m1/s1"  
BO9  InChIKey          InChI                 1.03   OTTYWVUOPWENAJ-HOJAQTOUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BO9  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-(tert-butoxycarbonyl)-L-gamma-glutamyl-N~6~-[(benzyloxy)carbonyl]-N-[(1S)-1-(dihydroxyboranyl)ethyl]-L-lysinamide"  
BO9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-5-[[(2S)-1-[[(1S)-1-(dihydroxyboranyl)ethyl]amino]-1-oxo-6-phenylmethoxycarbonylamino-hexan-2-yl]amino]-2-[(2-methylpropan-2-yl)oxycarbonylamino]-5-oxo-pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BO9  "Create component"   2005-04-18  RCSB  
BO9  "Modify descriptor"  2011-06-04  RCSB  
BO9  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BO9
_pdbx_chem_comp_synonyms.name        "BOC-GAMMA-D-GLU-L-LYS(CBZ)-D-BOROALA"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
