data_HM9
# 
_chem_comp.id                                    HM9 
_chem_comp.name                                  "6-(3-CARBAMIMIDAMIDOPROPYL)-3,5-DIHYDROXYPYRAZINE-2-CARBOTHIOIC S-ACID" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H13 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-04-18 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        271.296 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HM9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YGJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HM9 C    C    C 0 1 N N N Y N Y -3.788 2.005  5.535  -3.432 -1.223 -0.131 C    HM9 1  
HM9 SAE  SAE  S 0 1 N N N Y N Y -4.825 3.129  6.278  -2.914 -2.842 0.331  SAE  HM9 2  
HM9 CAC  CAC  C 0 1 Y N N N N N -3.675 0.636  5.995  -2.500 -0.086 -0.005 CAC  HM9 3  
HM9 NAB  NAB  N 0 1 Y N N N N N -4.479 0.277  7.059  -1.266 -0.282 0.458  NAB  HM9 4  
HM9 CAF  CAF  C 0 1 Y N N N N N -2.885 -0.308 5.348  -2.908 1.203  -0.377 CAF  HM9 5  
HM9 OAG  OAG  O 0 1 N N N N N N -2.118 -0.110 4.351  -4.159 1.408  -0.854 OAG  HM9 6  
HM9 NAH  NAH  N 0 1 Y N N N N N -2.895 -1.595 5.876  -2.066 2.220  -0.262 NAH  HM9 7  
HM9 CAI  CAI  C 0 1 Y N N N N N -3.667 -1.952 6.921  -0.842 2.016  0.205  CAI  HM9 8  
HM9 OAJ  OAJ  O 0 1 N N N N N N -3.641 -3.187 7.291  0.019  3.056  0.323  OAJ  HM9 9  
HM9 CAA  CAA  C 0 1 Y N N N N N -4.509 -0.984 7.529  -0.436 0.732  0.570  CAA  HM9 10 
HM9 CBW  CBW  C 0 1 N N N N N N -5.379 -1.329 8.666  0.959  0.505  1.095  CBW  HM9 11 
HM9 CBX  CBX  C 0 1 N N N N N N -4.714 -1.186 10.063 1.898  0.194  -0.072 CBX  HM9 12 
HM9 CBY  CBY  C 0 1 N N N N N N -5.744 -1.380 11.153 3.314  -0.036 0.461  CBY  HM9 13 
HM9 NBZ  NBZ  N 0 1 N N N N N N -5.191 -1.378 12.514 4.214  -0.333 -0.657 NBZ  HM9 14 
HM9 CCA  CCA  C 0 1 N N N N N N -4.914 -0.253 13.195 5.546  -0.577 -0.421 CCA  HM9 15 
HM9 NCC  NCC  N 0 1 N N N N N N -5.061 0.956  12.654 6.346  -0.842 -1.414 NCC  HM9 16 
HM9 NCB  NCB  N 0 1 N N N N N N -4.525 -0.328 14.463 6.034  -0.541 0.864  NCB  HM9 17 
HM9 OXT  OXT  O 0 1 N Y N Y N Y -3.122 2.363  4.440  -4.556 -1.042 -0.559 OXT  HM9 18 
HM9 HAE  HAE  H 0 1 N N N Y N Y -4.694 4.168  5.508  -4.091 -3.566 0.047  HAE  HM9 19 
HM9 HAG  HAG  H 0 1 N N N N N N -2.207 0.789  4.056  -4.811 1.614  -0.170 HAG  HM9 20 
HM9 HAJ  HAJ  H 0 1 N N N N N N -3.046 -3.673 6.732  -0.021 3.504  1.179  HAJ  HM9 21 
HM9 HBW1 HBW1 H 0 0 N N N N N N -6.249 -0.656 8.639  1.303  1.402  1.610  HBW1 HM9 22 
HM9 HBW2 HBW2 H 0 0 N N N N N N -5.685 -2.379 8.547  0.954  -0.334 1.791  HBW2 HM9 23 
HM9 HBX1 HBX1 H 0 0 N N N N N N -3.926 -1.946 10.169 1.554  -0.703 -0.587 HBX1 HM9 24 
HM9 HBX2 HBX2 H 0 0 N N N N N N -4.275 -0.182 10.154 1.903  1.033  -0.768 HBX2 HM9 25 
HM9 HBY1 HBY1 H 0 0 N N N N N N -6.470 -0.557 11.082 3.659  0.861  0.975  HBY1 HM9 26 
HM9 HBY2 HBY2 H 0 0 N N N N N N -6.232 -2.352 10.988 3.309  -0.874 1.156  HBY2 HM9 27 
HM9 HBZ  HBZ  H 0 1 N N N N N N -5.012 -2.257 12.956 3.869  -0.359 -1.563 HBZ  HM9 28 
HM9 HCC  HCC  H 0 1 N N N N N N -4.849 1.686  13.304 7.286  -1.014 -1.248 HCC  HM9 29 
HM9 HCB1 HCB1 H 0 0 N N N N N N -4.351 0.508  14.983 5.438  -0.344 1.604  HCB1 HM9 30 
HM9 HCB2 HCB2 H 0 0 N N N N N N -4.406 -1.221 14.897 6.974  -0.713 1.031  HCB2 HM9 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HM9 C   SAE  SING N N 1  
HM9 C   CAC  SING N N 2  
HM9 C   OXT  DOUB N N 3  
HM9 CAC NAB  DOUB Y N 4  
HM9 CAC CAF  SING Y N 5  
HM9 NAB CAA  SING Y N 6  
HM9 CAF OAG  SING N N 7  
HM9 CAF NAH  DOUB Y N 8  
HM9 NAH CAI  SING Y N 9  
HM9 CAI OAJ  SING N N 10 
HM9 CAI CAA  DOUB Y N 11 
HM9 CAA CBW  SING N N 12 
HM9 CBW CBX  SING N N 13 
HM9 CBX CBY  SING N N 14 
HM9 CBY NBZ  SING N N 15 
HM9 NBZ CCA  SING N N 16 
HM9 CCA NCC  DOUB N N 17 
HM9 CCA NCB  SING N N 18 
HM9 SAE HAE  SING N N 19 
HM9 OAG HAG  SING N N 20 
HM9 OAJ HAJ  SING N N 21 
HM9 CBW HBW1 SING N N 22 
HM9 CBW HBW2 SING N N 23 
HM9 CBX HBX1 SING N N 24 
HM9 CBX HBX2 SING N N 25 
HM9 CBY HBY1 SING N N 26 
HM9 CBY HBY2 SING N N 27 
HM9 NBZ HBZ  SING N N 28 
HM9 NCC HCC  SING N N 29 
HM9 NCB HCB1 SING N N 30 
HM9 NCB HCB2 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HM9 SMILES           ACDLabs              12.01 "O=C(S)c1nc(c(O)nc1O)CCCNC(=[N@H])N"                                                                             
HM9 SMILES_CANONICAL CACTVS               3.370 "NC(=N)NCCCc1nc(C(S)=O)c(O)nc1O"                                                                                 
HM9 SMILES           CACTVS               3.370 "NC(=N)NCCCc1nc(C(S)=O)c(O)nc1O"                                                                                 
HM9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(Cc1c(nc(c(n1)C(=O)S)O)O)CNC(=N)N"                                                                             
HM9 SMILES           "OpenEye OEToolkits" 1.7.0 "C(Cc1c(nc(c(n1)C(=O)S)O)O)CNC(=N)N"                                                                             
HM9 InChI            InChI                1.03  "InChI=1S/C9H13N5O3S/c10-9(11)12-3-1-2-4-6(15)14-7(16)5(13-4)8(17)18/h1-3H2,(H,17,18)(H4,10,11,12)(H2,14,15,16)" 
HM9 InChIKey         InChI                1.03  PSYKANVHSUDXBZ-UHFFFAOYSA-N                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HM9 "SYSTEMATIC NAME" ACDLabs              12.01 "6-(3-carbamimidamidopropyl)-3,5-dihydroxypyrazine-2-carbothioic S-acid"  
HM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "6-(3-carbamimidamidopropyl)-3,5-dihydroxy-pyrazine-2-carbothioic S-acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HM9 "Create component"     2011-04-18 EBI  
HM9 "Modify aromatic_flag" 2011-06-04 RCSB 
HM9 "Modify descriptor"    2011-06-04 RCSB 
HM9 "Modify backbone"      2023-11-03 PDBE 
# 
