data_T79
# 
_chem_comp.id                                    T79 
_chem_comp.name                                  "(2S)-2-azanylhex-4-ynoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H9 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(S)-2-Aminohex-4-ynoic acid; peptide staple" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-21 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        127.141 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T79 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8C17 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T79 N   N1  N 0 1 N N N Y Y N -14.884 30.022 -15.656 -0.323 -1.607 0.305  N   T79 1  
T79 O   O1  O 0 1 N N N Y N Y -15.348 31.435 -18.734 -2.691 -0.697 -0.484 O   T79 2  
T79 C   C1  C 0 1 N N N Y N Y -14.617 31.061 -17.841 -2.012 0.126  0.083  C   T79 3  
T79 CA  C2  C 0 1 N N S Y N N -15.188 31.212 -16.441 -0.559 -0.158 0.363  CA  T79 4  
T79 CB  C3  C 0 1 N N N N N N -14.720 32.542 -15.787 0.309  0.541  -0.686 CB  T79 5  
T79 CG  C4  C 0 1 N N N N N N -15.510 33.641 -16.335 1.730  0.364  -0.345 CG  T79 6  
T79 CD1 C5  C 0 1 N N N N N N -16.200 34.533 -16.768 2.863  0.222  -0.073 CD1 T79 7  
T79 CE1 C6  C 0 1 N N N N N N -17.079 35.599 -17.228 4.284  0.044  0.267  CE1 T79 8  
T79 OXT O2  O 0 1 N Y N Y N Y -13.411 30.470 -18.099 -2.552 1.294  0.465  OXT T79 9  
T79 H   H1  H 0 1 N N N Y Y N -15.261 30.124 -14.735 -0.836 -2.086 1.030  H   T79 10 
T79 H2  H2  H 0 1 N Y N Y Y N -15.290 29.220 -16.095 -0.556 -1.975 -0.606 H2  T79 11 
T79 HA  H4  H 0 1 N N N Y N N -16.281 31.278 -16.543 -0.300 0.212  1.354  HA  T79 12 
T79 HB3 H5  H 0 1 N N N N N N -14.866 32.489 -14.698 0.113  0.108  -1.667 HB3 T79 13 
T79 HB2 H6  H 0 1 N N N N N N -13.655 32.707 -16.007 0.070  1.605  -0.704 HB2 T79 14 
T79 HE1 H7  H 0 1 N N N N N N -16.693 36.011 -18.172 4.902  0.543  -0.480 HE1 T79 15 
T79 HE2 H8  H 0 1 N N N N N N -18.090 35.196 -17.390 4.479  0.477  1.248  HE2 T79 16 
T79 HE3 H9  H 0 1 N N N N N N -17.118 36.395 -16.470 4.523  -1.019 0.285  HE3 T79 17 
T79 HXT H10 H 0 1 N Y N Y N Y -13.278 30.418 -19.038 -3.488 1.431  0.264  HXT T79 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T79 O   C   DOUB N N 1  
T79 C   CA  SING N N 2  
T79 CE1 CD1 SING N N 3  
T79 CD1 CG  TRIP N N 4  
T79 CA  CB  SING N N 5  
T79 CA  N   SING N N 6  
T79 CG  CB  SING N N 7  
T79 C   OXT SING N N 8  
T79 N   H   SING N N 9  
T79 N   H2  SING N N 10 
T79 CA  HA  SING N N 11 
T79 CB  HB3 SING N N 12 
T79 CB  HB2 SING N N 13 
T79 CE1 HE1 SING N N 14 
T79 CE1 HE2 SING N N 15 
T79 CE1 HE3 SING N N 16 
T79 OXT HXT SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T79 InChI            InChI                1.06  "InChI=1S/C6H9NO2/c1-2-3-4-5(7)6(8)9/h5H,4,7H2,1H3,(H,8,9)/t5-/m0/s1" 
T79 InChIKey         InChI                1.06  VDWGCMRALYSYJV-YFKPBYRVSA-N                                           
T79 SMILES_CANONICAL CACTVS               3.385 "CC#CC[C@H](N)C(O)=O"                                                 
T79 SMILES           CACTVS               3.385 "CC#CC[CH](N)C(O)=O"                                                  
T79 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC#CC[C@@H](C(=O)O)N"                                                
T79 SMILES           "OpenEye OEToolkits" 2.0.7 "CC#CCC(C(=O)O)N"                                                     
# 
_pdbx_chem_comp_identifier.comp_id           T79 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanylhex-4-ynoic acid" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 T79 "(S)-2-Aminohex-4-ynoic acid" PUBCHEM ? 
2 T79 "peptide staple"              PDB     ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T79 "Create component" 2022-12-31 PDBE 
T79 "Initial release"  2023-03-15 RCSB 
T79 "Modify backbone"  2023-11-03 PDBE 
# 
