data_XL9
#

_chem_comp.id                                   XL9
_chem_comp.name                                 "N-[(3S,4S)-3-{[6-(2,6-dichloro-3,5-dimethoxyphenyl)quinazolin-2-yl]amino}oxan-4-yl]propanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H26 Cl2 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-05
_chem_comp.pdbx_modified_date                   2019-07-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       505.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XL9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6BIW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XL9  C1   C1   C   0  1  Y  N  N  21.802   -3.781   -6.634   6.072   1.115   0.460  C1   XL9   1  
XL9  C2   C2   C   0  1  Y  N  N  20.722   -4.652   -6.627   4.695   1.237   0.349  C2   XL9   2  
XL9  C3   C3   C   0  1  Y  N  N  19.640   -4.467   -7.498   3.941   0.176  -0.149  C3   XL9   3  
XL9  C4   C4   C   0  1  Y  N  N  19.676   -3.366   -8.366   4.574  -1.005  -0.532  C4   XL9   4  
XL9  C5   C5   C   0  1  Y  N  N  20.745   -2.482   -8.374   5.951  -1.120  -0.418  C5   XL9   5  
XL9  C6   C6   C   0  1  Y  N  N  21.803   -2.696   -7.502   6.699  -0.060   0.073  C6   XL9   6  
XL9  O1   O1   O   0  1  N  N  N  22.796   -4.072   -5.748   6.808   2.149   0.945  O1   XL9   7  
XL9  O2   O2   O   0  1  N  N  N  20.645   -1.460   -9.278   6.569  -2.272  -0.792  O2   XL9   8  
XL9  C7   C7   C   0  1  N  N  N  23.994   -3.300   -5.755   8.221   1.954   1.033  C7   XL9   9  
XL9  C8   C8   C   0  1  N  N  N  21.685   -0.493   -9.381   7.990  -2.322  -0.647  C8   XL9  10  
XL9  C9   C9   C   0  1  Y  N  N  18.516   -5.442   -7.493   2.468   0.303  -0.269  C9   XL9  11  
XL9  C10  C10  C   0  1  Y  N  N  18.755   -6.740   -7.873   1.645  -0.497   0.503  C10  XL9  12  
XL9  C11  C11  C   0  1  Y  N  N  17.742   -7.713   -7.840   0.255  -0.370   0.383  C11  XL9  13  
XL9  C12  C12  C   0  1  Y  N  N  16.433   -7.344   -7.447  -0.288   0.575  -0.527  C12  XL9  14  
XL9  C13  C13  C   0  1  Y  N  N  16.174   -6.005   -7.084   0.574   1.371  -1.296  C13  XL9  15  
XL9  C14  C14  C   0  1  Y  N  N  17.191   -5.094   -7.079   1.921   1.237  -1.162  C14  XL9  16  
XL9  C15  C15  C   0  1  Y  N  N  17.953   -9.065   -8.186  -0.633  -1.156   1.142  C15  XL9  17  
XL9  N1   N1   N   0  1  Y  N  N  16.981   -9.966   -8.129  -1.927  -0.980   0.974  N1   XL9  18  
XL9  C16  C16  C   0  1  Y  N  N  15.751   -9.547   -7.749  -2.402  -0.084   0.111  C16  XL9  19  
XL9  N2   N2   N   0  1  Y  N  N  15.431   -8.278   -7.421  -1.619   0.679  -0.626  N2   XL9  20  
XL9  N3   N3   N   0  1  N  N  N  14.704  -10.542   -7.684  -3.773   0.051  -0.018  N3   XL9  21  
XL9  C17  C17  C   0  1  N  N  S  13.275  -10.246   -7.657  -4.670  -0.783   0.786  C17  XL9  22  
XL9  C18  C18  C   0  1  N  N  S  12.476  -11.455   -8.148  -6.020  -0.077   0.945  C18  XL9  23  
XL9  C19  C19  C   0  1  N  N  N  12.367  -12.537   -7.077  -6.974  -0.992   1.720  C19  XL9  24  
XL9  C20  C20  C   0  1  N  N  N  11.998  -11.959   -5.735  -7.099  -2.328   0.983  C20  XL9  25  
XL9  O3   O3   O   0  1  N  N  N  12.906  -10.929   -5.357  -5.805  -2.916   0.842  O3   XL9  26  
XL9  C21  C21  C   0  1  N  N  N  12.829   -9.832   -6.264  -4.884  -2.127   0.085  C21  XL9  27  
XL9  N4   N4   N   0  1  N  N  N  13.081  -12.030   -9.349  -6.582   0.208  -0.378  N4   XL9  28  
XL9  C22  C22  C   0  1  N  N  N  12.664  -11.810  -10.598  -7.457   1.221  -0.533  C22  XL9  29  
XL9  C23  C23  C   0  1  N  N  N  13.434  -12.541  -11.662  -8.035   1.515  -1.894  C23  XL9  30  
XL9  C24  C24  C   0  1  N  N  N  14.840  -12.031  -11.815  -8.993   2.704  -1.795  C24  XL9  31  
XL9  O4   O4   O   0  1  N  N  N  11.737  -11.055  -10.870  -7.780   1.896   0.421  O4   XL9  32  
XL9  CL1  CL1  CL  0  0  N  N  N  20.715   -6.004   -5.522   3.912   2.710   0.828  CL1  XL9  33  
XL9  CL2  CL2  CL  0  0  N  N  N  18.378   -3.089   -9.473   3.640  -2.331  -1.152  CL2  XL9  34  
XL9  H1   H1   H   0  1  N  N  N  22.638   -2.011   -7.498   7.771  -0.153   0.161  H1   XL9  35  
XL9  H2   H2   H   0  1  N  N  N  24.677   -3.675   -4.979   8.688   2.854   1.434  H2   XL9  36  
XL9  H3   H3   H   0  1  N  N  N  24.478   -3.383   -6.740   8.432   1.112   1.691  H3   XL9  37  
XL9  H4   H4   H   0  1  N  N  N  23.752   -2.246   -5.553   8.622   1.749   0.041  H4   XL9  38  
XL9  H5   H5   H   0  1  N  N  N  21.426    0.243  -10.156   8.445  -1.536  -1.250  H5   XL9  39  
XL9  H6   H6   H   0  1  N  N  N  21.806    0.019   -8.415   8.254  -2.174   0.401  H6   XL9  40  
XL9  H7   H7   H   0  1  N  N  N  22.626   -0.994   -9.651   8.355  -3.293  -0.980  H7   XL9  41  
XL9  H8   H8   H   0  1  N  N  N  19.744   -7.019   -8.205   2.069  -1.213   1.192  H8   XL9  42  
XL9  H9   H9   H   0  1  N  N  N  15.174   -5.702   -6.811   0.169   2.092  -1.990  H9   XL9  43  
XL9  H10  H10  H   0  1  N  N  N  16.990   -4.084   -6.754   2.579   1.856  -1.754  H10  XL9  44  
XL9  H11  H11  H   0  1  N  N  N  18.936   -9.376   -8.507  -0.261  -1.887   1.845  H11  XL9  45  
XL9  H12  H12  H   0  1  N  N  N  14.841  -11.127   -8.483  -4.140   0.697  -0.640  H12  XL9  46  
XL9  H13  H13  H   0  1  N  N  N  13.074   -9.408   -8.341  -4.228  -0.951   1.769  H13  XL9  47  
XL9  H14  H14  H   0  1  N  N  N  11.459  -11.114   -8.391  -5.882   0.855   1.493  H14  XL9  48  
XL9  H15  H15  H   0  1  N  N  N  11.595  -13.260   -7.378  -6.580  -1.164   2.722  H15  XL9  49  
XL9  H16  H16  H   0  1  N  N  N  13.336  -13.051   -6.990  -7.954  -0.520   1.789  H16  XL9  50  
XL9  H17  H17  H   0  1  N  N  N  10.982  -11.541   -5.790  -7.743  -2.998   1.552  H17  XL9  51  
XL9  H18  H18  H   0  1  N  N  N  12.025  -12.758   -4.979  -7.531  -2.159  -0.004  H18  XL9  52  
XL9  H19  H19  H   0  1  N  N  N  13.479   -9.021   -5.904  -5.287  -1.956  -0.913  H19  XL9  53  
XL9  H20  H20  H   0  1  N  N  N  11.789   -9.475   -6.310  -3.933  -2.653   0.008  H20  XL9  54  
XL9  H21  H21  H   0  1  N  N  N  13.868  -12.635   -9.225  -6.323  -0.331  -1.141  H21  XL9  55  
XL9  H22  H22  H   0  1  N  N  N  12.910  -12.420  -12.621  -7.229   1.755  -2.587  H22  XL9  56  
XL9  H23  H23  H   0  1  N  N  N  13.474  -13.608  -11.397  -8.577   0.641  -2.255  H23  XL9  57  
XL9  H24  H24  H   0  1  N  N  N  15.353  -12.600  -12.604  -9.800   2.464  -1.102  H24  XL9  58  
XL9  H25  H25  H   0  1  N  N  N  14.816  -10.966  -12.088  -8.452   3.578  -1.433  H25  XL9  59  
XL9  H26  H26  H   0  1  N  N  N  15.380  -12.153  -10.864  -9.411   2.916  -2.779  H26  XL9  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XL9  C24  C23  SING  N  N   1  
XL9  C23  C22  SING  N  N   2  
XL9  O4   C22  DOUB  N  N   3  
XL9  C22  N4   SING  N  N   4  
XL9  CL2  C4   SING  N  N   5  
XL9  C8   O2   SING  N  N   6  
XL9  N4   C18  SING  N  N   7  
XL9  O2   C5   SING  N  N   8  
XL9  C5   C4   DOUB  Y  N   9  
XL9  C5   C6   SING  Y  N  10  
XL9  C4   C3   SING  Y  N  11  
XL9  C15  N1   DOUB  Y  N  12  
XL9  C15  C11  SING  Y  N  13  
XL9  C18  C17  SING  N  N  14  
XL9  C18  C19  SING  N  N  15  
XL9  N1   C16  SING  Y  N  16  
XL9  C10  C11  DOUB  Y  N  17  
XL9  C10  C9   SING  Y  N  18  
XL9  C11  C12  SING  Y  N  19  
XL9  C16  N3   SING  N  N  20  
XL9  C16  N2   DOUB  Y  N  21  
XL9  N3   C17  SING  N  N  22  
XL9  C17  C21  SING  N  N  23  
XL9  C6   C1   DOUB  Y  N  24  
XL9  C3   C9   SING  N  N  25  
XL9  C3   C2   DOUB  Y  N  26  
XL9  C9   C14  DOUB  Y  N  27  
XL9  C12  N2   SING  Y  N  28  
XL9  C12  C13  DOUB  Y  N  29  
XL9  C13  C14  SING  Y  N  30  
XL9  C19  C20  SING  N  N  31  
XL9  C1   C2   SING  Y  N  32  
XL9  C1   O1   SING  N  N  33  
XL9  C2   CL1  SING  N  N  34  
XL9  C21  O3   SING  N  N  35  
XL9  C7   O1   SING  N  N  36  
XL9  C20  O3   SING  N  N  37  
XL9  C6   H1   SING  N  N  38  
XL9  C7   H2   SING  N  N  39  
XL9  C7   H3   SING  N  N  40  
XL9  C7   H4   SING  N  N  41  
XL9  C8   H5   SING  N  N  42  
XL9  C8   H6   SING  N  N  43  
XL9  C8   H7   SING  N  N  44  
XL9  C10  H8   SING  N  N  45  
XL9  C13  H9   SING  N  N  46  
XL9  C14  H10  SING  N  N  47  
XL9  C15  H11  SING  N  N  48  
XL9  N3   H12  SING  N  N  49  
XL9  C17  H13  SING  N  N  50  
XL9  C18  H14  SING  N  N  51  
XL9  C19  H15  SING  N  N  52  
XL9  C19  H16  SING  N  N  53  
XL9  C20  H17  SING  N  N  54  
XL9  C20  H18  SING  N  N  55  
XL9  C21  H19  SING  N  N  56  
XL9  C21  H20  SING  N  N  57  
XL9  N4   H21  SING  N  N  58  
XL9  C23  H22  SING  N  N  59  
XL9  C23  H23  SING  N  N  60  
XL9  C24  H24  SING  N  N  61  
XL9  C24  H25  SING  N  N  62  
XL9  C24  H26  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XL9  SMILES            ACDLabs               12.01  "c4(c(Cl)c(c1ccc3c(c1)cnc(NC2COCCC2NC(CC)=O)n3)c(c(c4)OC)Cl)OC"  
XL9  InChI             InChI                 1.03   "InChI=1S/C24H26Cl2N4O4/c1-4-20(31)28-16-7-8-34-12-17(16)30-24-27-11-14-9-13(5-6-15(14)29-24)21-22(25)18(32-2)10-19(33-3)23(21)26/h5-6,9-11,16-17H,4,7-8,12H2,1-3H3,(H,28,31)(H,27,29,30)/t16-,17+/m0/s1"  
XL9  InChIKey          InChI                 1.03   YLMQSRWGLUFWCN-DLBZAZTESA-N  
XL9  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)N[C@H]1CCOC[C@H]1Nc2ncc3cc(ccc3n2)c4c(Cl)c(OC)cc(OC)c4Cl"  
XL9  SMILES            CACTVS                3.385  "CCC(=O)N[CH]1CCOC[CH]1Nc2ncc3cc(ccc3n2)c4c(Cl)c(OC)cc(OC)c4Cl"  
XL9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCC(=O)N[C@H]1CCOC[C@H]1Nc2ncc3cc(ccc3n2)c4c(c(cc(c4Cl)OC)OC)Cl"  
XL9  SMILES            "OpenEye OEToolkits"  2.0.6  "CCC(=O)NC1CCOCC1Nc2ncc3cc(ccc3n2)c4c(c(cc(c4Cl)OC)OC)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XL9  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(3S,4S)-3-{[6-(2,6-dichloro-3,5-dimethoxyphenyl)quinazolin-2-yl]amino}oxan-4-yl]propanamide"  
XL9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[(3~{S},4~{S})-3-[[6-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]quinazolin-2-yl]amino]oxan-4-yl]propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XL9  "Create component"  2017-11-05  RCSB  
XL9  "Initial release"   2019-07-10  RCSB  
##
