data_ZY9
# 
_chem_comp.id                                    ZY9 
_chem_comp.name                                  "6-(aminomethyl)pyridine-2-carboxylic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H8 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-10-24 
_chem_comp.pdbx_modified_date                    2024-05-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        152.151 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZY9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HZX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZY9 O   O   O 0 1 N N N Y N Y 35.567 45.970 7.950 -3.171 -0.176 -0.214 O   ZY9 1  
ZY9 C   C   C 0 1 N N N Y N Y 36.771 45.711 7.845 -2.159 0.467  -0.021 C   ZY9 2  
ZY9 CA  C10 C 0 1 Y N N Y N N 37.684 46.732 7.501 -0.846 -0.216 0.026  C10 ZY9 3  
ZY9 N11 N11 N 0 1 Y N N Y N N 38.981 46.403 7.250 0.257  0.491  0.237  N11 ZY9 4  
ZY9 C9  C9  C 0 1 Y N N N N N 37.258 48.061 7.333 -0.779 -1.598 -0.145 C9  ZY9 5  
ZY9 C8  C8  C 0 1 Y N N N N N 38.197 49.025 6.958 0.457  -2.223 -0.097 C8  ZY9 6  
ZY9 C6  C6  C 0 1 Y N N N N N 39.525 48.651 6.743 1.583  -1.445 0.120  C6  ZY9 7  
ZY9 C7  C7  C 0 1 Y N N Y N N 39.908 47.316 6.896 1.442  -0.076 0.287  C7  ZY9 8  
ZY9 C2  C2  C 0 1 N N N Y N N 41.221 46.977 6.685 2.664  0.774  0.523  C2  ZY9 9  
ZY9 N   N   N 0 1 N N N Y Y N 41.373 45.523 6.505 3.129  1.329  -0.755 N   ZY9 10 
ZY9 OXT O1  O 0 1 N Y N Y N Y 37.304 44.470 7.967 -2.230 1.801  0.144  O1  ZY9 11 
ZY9 H1  H1  H 0 1 N N N N N N 36.224 48.332 7.491 -1.678 -2.173 -0.312 H1  ZY9 12 
ZY9 H6  H2  H 0 1 N N N N N N 37.897 50.055 6.835 0.540  -3.292 -0.226 H2  ZY9 13 
ZY9 H3  H3  H 0 1 N N N N N N 40.256 49.393 6.459 2.561  -1.901 0.163  H3  ZY9 14 
ZY9 H4  H4  H 0 1 N N N Y N N 41.818 47.296 7.552 2.414  1.588  1.204  H4  ZY9 15 
ZY9 H5  H5  H 0 1 N N N Y N N 41.584 47.490 5.782 3.453  0.162  0.962  H5  ZY9 16 
ZY9 H   H6  H 0 1 N N N Y Y N 42.337 45.304 6.353 2.394  1.847  -1.213 H6  ZY9 17 
ZY9 H2  H7  H 0 1 N Y N Y Y N 41.049 45.050 7.324 3.948  1.903  -0.623 H7  ZY9 18 
ZY9 HXT H9  H 0 1 N Y N Y N Y 36.612 43.844 8.143 -3.109 2.203  0.100  H9  ZY9 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZY9 N   C2  SING N N 1  
ZY9 C2  C7  SING N N 2  
ZY9 C6  C7  DOUB Y N 3  
ZY9 C6  C8  SING Y N 4  
ZY9 C7  N11 SING Y N 5  
ZY9 C8  C9  DOUB Y N 6  
ZY9 N11 CA  DOUB Y N 7  
ZY9 C9  CA  SING Y N 8  
ZY9 CA  C   SING N N 9  
ZY9 C   O   DOUB N N 10 
ZY9 C   OXT SING N N 11 
ZY9 C9  H1  SING N N 12 
ZY9 C8  H6  SING N N 13 
ZY9 C6  H3  SING N N 14 
ZY9 C2  H4  SING N N 15 
ZY9 C2  H5  SING N N 16 
ZY9 N   H   SING N N 17 
ZY9 N   H2  SING N N 18 
ZY9 OXT HXT SING N N 19 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZY9 InChI            InChI                1.03  "InChI=1S/C7H8N2O2/c8-4-5-2-1-3-6(9-5)7(10)11/h1-3H,4,8H2,(H,10,11)" 
ZY9 InChIKey         InChI                1.03  KKWKBQBRQWNTPN-UHFFFAOYSA-N                                          
ZY9 SMILES_CANONICAL CACTVS               3.385 "NCc1cccc(n1)C(O)=O"                                                 
ZY9 SMILES           CACTVS               3.385 "NCc1cccc(n1)C(O)=O"                                                 
ZY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(nc(c1)C(=O)O)CN"                                               
ZY9 SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(nc(c1)C(=O)O)CN"                                               
# 
_pdbx_chem_comp_identifier.comp_id           ZY9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "6-(aminomethyl)pyridine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZY9 "Create component"    2018-10-24 EBI  
ZY9 "Initial release"     2019-09-18 RCSB 
ZY9 "Modify backbone"     2023-11-03 PDBE 
ZY9 "Modify linking type" 2024-05-09 PDBE 
# 
