data_9VA
# 
_chem_comp.id                                    9VA 
_chem_comp.name                                  "3-[(2S,5S)-5-(hydroxymethyl)-6-oxo-1,2,5,6-tetrahydropyrazin-2-yl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H13 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-13 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        199.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9VA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5W4K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9VA CAC C57 C 0 1 N N N Y N Y 74.039 -49.729 -2.035 -1.034 0.002  -1.889 CAC 9VA 1  
9VA NFB N21 N 0 1 N N N N N N 74.944 -50.761 -2.158 -2.124 -0.295 -1.320 NFB 9VA 2  
9VA CFA C58 C 0 1 N N S N N N 76.380 -50.614 -1.863 -2.450 0.075  0.050  CFA 9VA 3  
9VA CFD C59 C 0 1 N N N N N N 77.161 -50.817 -3.161 -2.231 -1.135 0.961  CFD 9VA 4  
9VA OFE O23 O 0 1 N N N N N N 76.749 -49.857 -4.125 -3.156 -2.167 0.614  OFE 9VA 5  
9VA CEZ C60 C 0 1 N N N N N N 76.710 -49.376 -1.314 -1.591 1.210  0.524  CEZ 9VA 6  
9VA OFC O24 O 0 1 N N N N N N 77.863 -49.142 -0.962 -1.954 1.865  1.478  OFC 9VA 7  
9VA NAA N22 N 0 1 N N N N N N 75.773 -48.360 -1.140 -0.434 1.520  -0.076 NAA 9VA 8  
9VA CAB C61 C 0 1 N N S N N N 74.355 -48.478 -1.508 0.065  0.774  -1.225 CAB 9VA 9  
9VA CAH C62 C 0 1 N N N N N N 73.946 -47.358 -2.478 1.150  -0.198 -0.759 CAH 9VA 10 
9VA CAJ C63 C 0 1 N N N N N N 74.838 -47.321 -3.721 2.333  0.590  -0.192 CAJ 9VA 11 
9VA CAK C64 C 0 1 N N N N N N 74.621 -45.975 -4.402 3.402  -0.368 0.266  CAK 9VA 12 
9VA OAL O25 O 0 1 N N N N N N 73.492 -45.520 -4.513 3.234  -1.564 0.151  OAL 9VA 13 
9VA NAM N23 N 0 1 N N N N N N 75.706 -45.342 -4.813 4.544  0.104  0.804  NAM 9VA 14 
9VA H76 H76 H 0 1 N N N N N N 76.675 -51.414 -1.167 -3.496 0.375  0.100  H76 9VA 15 
9VA H77 H77 H 0 1 N N N N N N 78.236 -50.697 -2.963 -1.212 -1.503 0.837  H77 9VA 16 
9VA H78 H78 H 0 1 N N N N N N 76.970 -51.829 -3.548 -2.387 -0.841 1.999  H78 9VA 17 
9VA H79 H79 H 0 1 N N N N N N 77.237 -49.987 -4.930 -3.075 -2.966 1.152  H79 9VA 18 
9VA H80 H80 H 0 1 N N N N N N 76.084 -47.498 -0.740 0.088  2.264  0.265  H80 9VA 19 
9VA H81 H81 H 0 1 N N N N N N 73.765 -48.330 -0.591 0.496  1.472  -1.943 H81 9VA 20 
9VA H82 H82 H 0 1 N N N N N N 72.905 -47.524 -2.793 0.746  -0.852 0.014  H82 9VA 21 
9VA H83 H83 H 0 1 N N N N N N 74.022 -46.392 -1.957 1.486  -0.800 -1.604 H83 9VA 22 
9VA H84 H84 H 0 1 N N N N N N 75.893 -47.428 -3.429 2.738  1.243  -0.965 H84 9VA 23 
9VA H85 H85 H 0 1 N N N N N N 74.562 -48.137 -4.405 1.997  1.191  0.652  H85 9VA 24 
9VA H86 H86 H 0 1 N N N N N N 75.628 -44.442 -5.241 4.678  1.060  0.896  H86 9VA 25 
9VA H87 H87 H 0 1 N N N N N N 76.605 -45.763 -4.696 5.232  -0.513 1.099  H87 9VA 26 
9VA H2  H2  H 0 1 N Y N Y N Y 73.025 -49.900 -2.366 -0.886 -0.322 -2.908 H2  9VA 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9VA CAC NFB DOUB N N 1  
9VA CAC CAB SING N N 2  
9VA NFB CFA SING N N 3  
9VA CFA CFD SING N N 4  
9VA CFA CEZ SING N N 5  
9VA CFD OFE SING N N 6  
9VA CEZ NAA SING N N 7  
9VA CEZ OFC DOUB N N 8  
9VA NAA CAB SING N N 9  
9VA CAB CAH SING N N 10 
9VA CAH CAJ SING N N 11 
9VA CAJ CAK SING N N 12 
9VA CAK OAL DOUB N N 13 
9VA CAK NAM SING N N 14 
9VA CFA H76 SING N N 15 
9VA CFD H77 SING N N 16 
9VA CFD H78 SING N N 17 
9VA OFE H79 SING N N 18 
9VA NAA H80 SING N N 19 
9VA CAB H81 SING N N 20 
9VA CAH H82 SING N N 21 
9VA CAH H83 SING N N 22 
9VA CAJ H84 SING N N 23 
9VA CAJ H85 SING N N 24 
9VA NAM H86 SING N N 25 
9VA NAM H87 SING N N 26 
9VA CAC H2  SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9VA SMILES           ACDLabs              12.01 "C1=NC(CO)C(NC1CCC(=O)N)=O"                                                                                 
9VA InChI            InChI                1.03  "InChI=1S/C8H13N3O3/c9-7(13)2-1-5-3-10-6(4-12)8(14)11-5/h3,5-6,12H,1-2,4H2,(H2,9,13)(H,11,14)/t5-,6-/m0/s1" 
9VA InChIKey         InChI                1.03  OCHCPOLYCJESTJ-WDSKDSINSA-N                                                                                 
9VA SMILES_CANONICAL CACTVS               3.385 "NC(=O)CC[C@@H]1NC(=O)[C@H](CO)N=C1"                                                                        
9VA SMILES           CACTVS               3.385 "NC(=O)CC[CH]1NC(=O)[CH](CO)N=C1"                                                                           
9VA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=N[C@H](C(=O)N[C@H]1CCC(=O)N)CO"                                                                         
9VA SMILES           "OpenEye OEToolkits" 2.0.6 "C1=NC(C(=O)NC1CCC(=O)N)CO"                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9VA "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(2S,5S)-5-(hydroxymethyl)-6-oxo-1,2,5,6-tetrahydropyrazin-2-yl]propanamide"                 
9VA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[(2~{S},5~{S})-5-(hydroxymethyl)-6-oxidanylidene-2,5-dihydro-1~{H}-pyrazin-2-yl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9VA "Create component"       2017-06-13 RCSB 
9VA "Initial release"        2017-08-30 RCSB 
9VA "Modify one letter code" 2017-08-30 RCSB 
9VA "Modify backbone"        2023-11-03 PDBE 
# 
