data_XXA
# 
_chem_comp.id                                    XXA 
_chem_comp.name                                  "2,4,5-trideoxy-2-(methylamino)-4-[(2E)-penta-2,4-dien-1-yl]-L-xylonic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H19 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-19 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        213.273 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XXA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ODI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XXA C    C    C 0 1 N N N Y N Y 5.753 -31.936 27.557 3.267  -0.416 -0.119 C    XXA 1  
XXA N    N    N 0 1 N N N Y Y N 8.081 -31.567 26.690 1.732  1.408  -0.590 N    XXA 2  
XXA O    O    O 0 1 N N N Y N Y 5.657 -32.948 26.857 3.889  -0.005 -1.069 O    XXA 3  
XXA CA   CA   C 0 1 N N S Y N N 6.938 -31.013 27.428 1.994  0.271  0.303  CA   XXA 4  
XXA CB   CB   C 0 1 N N R N N N 6.500 -29.608 26.959 0.830  -0.718 0.224  CB   XXA 5  
XXA CE   CE   C 0 1 N N N N N N 6.484 -26.456 27.472 -2.945 -0.240 0.634  CE   XXA 6  
XXA CH   CH   C 0 1 N N N N N N 4.610 -25.205 28.360 -5.172 0.377  -0.105 CH   XXA 7  
XXA CN   CN   C 0 1 N N N N N N 7.968 -31.777 25.245 2.454  2.606  -0.142 CN   XXA 8  
XXA CT   CT   C 0 1 N N N N N N 3.410 -24.662 28.167 -6.129 0.271  -1.020 CT   XXA 9  
XXA CZ   CZ   C 0 1 N N N N N N 5.277 -25.928 27.268 -3.902 -0.345 -0.281 CZ   XXA 10 
XXA CD1  CD1  C 0 1 N N N N N N 8.533 -28.479 28.076 -0.414 0.608  1.939  CD1  XXA 11 
XXA CD2  CD2  C 0 1 N N N N N N 7.195 -27.208 26.358 -1.645 -0.979 0.453  CD2  XXA 12 
XXA OG1  OG1  O 0 1 N N N N N N 5.775 -29.748 25.750 0.767  -1.277 -1.089 OG1  XXA 13 
XXA CG2  CG2  C 0 1 N N R N N N 7.660 -28.595 26.817 -0.480 0.010  0.532  CG2  XXA 14 
XXA OXT  OXT  O 0 1 N Y N Y N Y 4.725 -31.635 28.504 3.706  -1.489 0.558  O3   XXA 15 
XXA H    H1   H 0 1 N Y N Y Y N 8.838 -30.927 26.822 1.967  1.179  -1.544 H1   XXA 16 
XXA HA   HA   H 0 1 N N N Y N N 7.348 -30.901 28.442 2.097  0.630  1.327  HA   XXA 17 
XXA HB   HB   H 0 1 N N N N N N 5.862 -29.176 27.744 0.981  -1.516 0.951  HB   XXA 18 
XXA HE   HE   H 0 1 N N N N N N 6.960 -26.349 28.435 -3.099 0.375  1.508  HE   XXA 19 
XXA HH   HH   H 0 1 N N N N N N 5.094 -25.114 29.321 -5.326 0.992  0.770  HH   XXA 20 
XXA HN   HN   H 0 1 N N N N N N 8.910 -32.195 24.860 2.242  3.433  -0.821 HN   XXA 21 
XXA HNA  HNA  H 0 1 N N N N N N 7.145 -32.478 25.040 2.129  2.871  0.864  HNA  XXA 22 
XXA H8   H8   H 0 1 N N N N N N 7.764 -30.816 24.750 3.525  2.405  -0.137 H8   XXA 23 
XXA HT   HT   H 0 1 N N N N N N 2.922 -24.131 28.971 -7.062 0.801  -0.890 HT   XXA 24 
XXA HTA  HTA  H 0 1 N N N N N N 2.925 -24.752 27.206 -5.975 -0.344 -1.894 HTA  XXA 25 
XXA HZ   HZ   H 0 1 N N N N N N 4.793 -26.031 26.308 -3.749 -0.961 -1.156 HZ   XXA 26 
XXA HD1  HD1  H 0 1 N N N N N N 8.858 -29.482 28.391 0.416  1.313  1.995  HD1  XXA 27 
XXA HD1A HD1A H 0 0 N N N N N N 9.416 -27.861 27.854 -1.347 1.127  2.158  HD1A XXA 28 
XXA HD1B HD1B H 0 0 N N N N N N 7.951 -28.011 28.884 -0.262 -0.190 2.666  HD1B XXA 29 
XXA HD2  HD2  H 0 1 N N N N N N 6.500 -27.330 25.514 -1.540 -1.727 1.238  HD2  XXA 30 
XXA HD2A HD2A H 0 0 N N N N N N 8.074 -26.626 26.045 -1.639 -1.471 -0.520 HD2A XXA 31 
XXA HOG1 HOG1 H 0 0 N N N N N N 5.497 -28.892 25.446 0.633  -0.622 -1.789 HOG1 XXA 32 
XXA HG2  HG2  H 0 1 N N N N N N 8.291 -29.018 26.021 -0.632 0.808  -0.195 HG2  XXA 33 
XXA HXT  HXT  H 0 1 N Y N Y N Y 4.053 -32.305 28.466 4.525  -1.899 0.248  H19  XXA 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XXA C   OXT  SING N N 1  
XXA N   CA   SING N N 2  
XXA O   C    DOUB N N 3  
XXA CA  C    SING N N 4  
XXA CB  CA   SING N N 5  
XXA CN  N    SING N N 6  
XXA CT  CH   DOUB N N 7  
XXA CZ  CE   DOUB N N 8  
XXA CZ  CH   SING N N 9  
XXA CD2 CE   SING N N 10 
XXA CD2 CG2  SING N N 11 
XXA OG1 CB   SING N N 12 
XXA CG2 CB   SING N N 13 
XXA CG2 CD1  SING N N 14 
XXA N   H    SING N N 15 
XXA CA  HA   SING N N 16 
XXA CB  HB   SING N N 17 
XXA CE  HE   SING N E 18 
XXA CH  HH   SING N N 19 
XXA CN  HN   SING N N 20 
XXA CN  HNA  SING N N 21 
XXA CN  H8   SING N N 22 
XXA CT  HT   SING N N 23 
XXA CT  HTA  SING N N 24 
XXA CZ  HZ   SING N N 25 
XXA CD1 HD1  SING N N 26 
XXA CD1 HD1A SING N N 27 
XXA CD1 HD1B SING N N 28 
XXA CD2 HD2  SING N N 29 
XXA CD2 HD2A SING N N 30 
XXA OG1 HOG1 SING N N 31 
XXA CG2 HG2  SING N N 32 
XXA OXT HXT  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XXA SMILES           ACDLabs              12.01 "O=C(O)C(NC)C(O)C(C/C=C/C=C)C"                                                                                          
XXA SMILES_CANONICAL CACTVS               3.370 "CN[C@@H]([C@H](O)[C@H](C)C/C=C/C=C)C(O)=O"                                                                             
XXA SMILES           CACTVS               3.370 "CN[CH]([CH](O)[CH](C)CC=CC=C)C(O)=O"                                                                                   
XXA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H](C/C=C/C=C)[C@H]([C@@H](C(=O)O)NC)O"                                                                             
XXA SMILES           "OpenEye OEToolkits" 1.7.0 "CC(CC=CC=C)C(C(C(=O)O)NC)O"                                                                                            
XXA InChI            InChI                1.03  "InChI=1S/C11H19NO3/c1-4-5-6-7-8(2)10(13)9(12-3)11(14)15/h4-6,8-10,12-13H,1,7H2,2-3H3,(H,14,15)/b6-5+/t8-,9+,10-/m1/s1" 
XXA InChIKey         InChI                1.03  NEXZFPQXALQHRJ-RNWMEYJFSA-N                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XXA "SYSTEMATIC NAME" ACDLabs              12.01 "2,4,5-trideoxy-2-(methylamino)-4-[(2E)-penta-2,4-dien-1-yl]-L-xylonic acid" 
XXA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R,4R,6E)-3-hydroxy-4-methyl-2-(methylamino)nona-6,8-dienoic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XXA "Create component"  2010-11-19 RCSB 
XXA "Modify descriptor" 2011-06-04 RCSB 
XXA "Modify backbone"   2023-11-03 PDBE 
# 
