data_YYA
# 
_chem_comp.id                                    YYA 
_chem_comp.name                                  "2,4,5-trideoxy-2-(methylamino)-4-[(2Z)-penta-2,4-dien-1-yl]-L-xylonic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H19 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-19 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        213.273 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YYA 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ODL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YYA C    C    C 0 1 N N N Y N Y 59.116 -3.657 37.768 3.006  -0.647 0.222  C    YYA 1  
YYA N    N    N 0 1 N N N Y Y N 57.311 -3.191 36.137 1.684  0.669  -1.336 N    YYA 2  
YYA O    O    O 0 1 N N N Y N Y 59.738 -4.222 36.868 3.576  -1.055 -0.762 O    YYA 3  
YYA CA   CA   C 0 1 N N S Y N N 57.717 -3.141 37.540 1.885  0.351  0.084  CA   YYA 4  
YYA CB   CB   C 0 1 N N R N N N 56.703 -3.735 38.544 0.599  -0.244 0.660  CB   YYA 5  
YYA CE   CE   C 0 1 N N N N N N 54.655 -2.829 40.797 -3.018 1.007  0.631  CE   YYA 6  
YYA CH   CH   C 0 1 N N N N N N 54.257 -4.666 42.403 -4.061 -0.906 -0.436 CH   YYA 7  
YYA CN   CN   C 0 1 N N N N N N 57.070 -4.494 35.512 2.599  1.732  -1.773 CN   YYA 8  
YYA CT   CT   C 0 1 N N N N N N 54.229 -5.017 43.686 -5.075 -1.388 -1.146 CT   YYA 9  
YYA CZ   CZ   C 0 1 N N N N N N 54.611 -3.284 42.051 -4.075 0.497  0.008  CZ   YYA 10 
YYA CD1  CD1  C 0 1 N N N N N N 55.192 -1.677 38.243 -0.275 2.057  1.086  CD1  YYA 11 
YYA CD2  CD2  C 0 1 N N N N N N 54.366 -3.660 39.561 -1.851 0.121  0.985  CD2  YYA 12 
YYA OG1  OG1  O 0 1 N N N N N N 56.741 -5.149 38.482 0.328  -1.497 0.027  OG1  YYA 13 
YYA CG2  CG2  C 0 1 N N R N N N 55.262 -3.200 38.404 -0.565 0.716  0.409  CG2  YYA 14 
YYA OXT  OXT  O 0 1 N Y N Y N Y 59.729 -3.487 39.049 3.368  -1.085 1.438  O3   YYA 15 
YYA H    H1   H 0 1 N Y N Y Y N 56.451 -2.684 36.074 1.788  -0.155 -1.909 H1   YYA 16 
YYA HA   HA   H 0 1 N N N Y N N 57.726 -2.064 37.766 2.140  1.261  0.627  HA   YYA 17 
YYA HB   HB   H 0 1 N N N N N N 57.022 -3.395 39.540 0.718  -0.397 1.733  HB   YYA 18 
YYA HE   HE   H 0 1 N N N N N N 54.916 -1.791 40.651 -2.994 2.057  0.883  HE   YYA 19 
YYA HH   HH   H 0 1 N N N N N N 54.023 -5.386 41.632 -3.226 -1.543 -0.184 HH   YYA 20 
YYA HN   HN   H 0 1 N N N N N N 56.775 -4.349 34.462 2.430  1.947  -2.828 HN   YYA 21 
YYA HNA  HNA  H 0 1 N N N N N N 57.989 -5.096 35.554 2.418  2.631  -1.184 HNA  YYA 22 
YYA H8   H8   H 0 1 N N N N N N 56.265 -5.015 36.050 3.630  1.405  -1.630 H8   YYA 23 
YYA HT   HT   H 0 1 N N N N N N 53.971 -6.028 43.964 -5.065 -2.418 -1.471 HT   YYA 24 
YYA HTA  HTA  H 0 1 N N N N N N 54.464 -4.291 44.450 -5.909 -0.750 -1.398 HTA  YYA 25 
YYA HZ   HZ   H 0 1 N N N N N N 54.849 -2.599 42.851 -4.944 1.112  -0.173 HZ   YYA 26 
YYA HD1  HD1  H 0 1 N N N N N N 54.141 -1.366 38.149 0.641  2.481  0.675  HD1  YYA 27 
YYA HD1A HD1A H 0 0 N N N N N N 55.640 -1.194 39.124 -1.105 2.742  0.907  HD1A YYA 28 
YYA HD1B HD1B H 0 0 N N N N N N 55.745 -1.378 37.340 -0.156 1.904  2.159  HD1B YYA 29 
YYA HD2  HD2  H 0 1 N N N N N N 54.567 -4.719 39.779 -1.765 0.051  2.069  HD2  YYA 30 
YYA HD2A HD2A H 0 0 N N N N N N 53.311 -3.536 39.277 -2.010 -0.873 0.568  HD2A YYA 31 
YYA HOG1 HOG1 H 0 0 N N N N N N 56.117 -5.510 39.100 0.210  -1.436 -0.930 HOG1 YYA 32 
YYA HG2  HG2  H 0 1 N N N N N N 54.879 -3.638 37.470 -0.684 0.870  -0.664 HG2  YYA 33 
YYA HXT  HXT  H 0 1 N Y N Y N Y 60.602 -3.861 39.035 4.090  -1.728 1.475  H19  YYA 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YYA C   OXT  SING N N 1  
YYA N   CA   SING N N 2  
YYA O   C    DOUB N N 3  
YYA CA  C    SING N N 4  
YYA CA  CB   SING N N 5  
YYA CE  CZ   DOUB N N 6  
YYA CH  CT   DOUB N N 7  
YYA CN  N    SING N N 8  
YYA CZ  CH   SING N Z 9  
YYA CD1 CG2  SING N N 10 
YYA CD2 CE   SING N N 11 
YYA OG1 CB   SING N N 12 
YYA CG2 CB   SING N N 13 
YYA CG2 CD2  SING N N 14 
YYA N   H    SING N N 15 
YYA CA  HA   SING N N 16 
YYA CB  HB   SING N N 17 
YYA CE  HE   SING N N 18 
YYA CH  HH   SING N N 19 
YYA CN  HN   SING N N 20 
YYA CN  HNA  SING N N 21 
YYA CN  H8   SING N N 22 
YYA CT  HT   SING N N 23 
YYA CT  HTA  SING N N 24 
YYA CZ  HZ   SING N N 25 
YYA CD1 HD1  SING N N 26 
YYA CD1 HD1A SING N N 27 
YYA CD1 HD1B SING N N 28 
YYA CD2 HD2  SING N N 29 
YYA CD2 HD2A SING N N 30 
YYA OG1 HOG1 SING N N 31 
YYA CG2 HG2  SING N N 32 
YYA OXT HXT  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YYA SMILES           ACDLabs              12.01 "O=C(O)C(NC)C(O)C(C\C=C/C=C)C"                                                                                          
YYA SMILES_CANONICAL CACTVS               3.370 "CN[C@@H]([C@H](O)[C@H](C)C\C=C/C=C)C(O)=O"                                                                             
YYA SMILES           CACTVS               3.370 "CN[CH]([CH](O)[CH](C)CC=CC=C)C(O)=O"                                                                                   
YYA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H](C/C=C\C=C)[C@H]([C@@H](C(=O)O)NC)O"                                                                             
YYA SMILES           "OpenEye OEToolkits" 1.7.0 "CC(CC=CC=C)C(C(C(=O)O)NC)O"                                                                                            
YYA InChI            InChI                1.03  "InChI=1S/C11H19NO3/c1-4-5-6-7-8(2)10(13)9(12-3)11(14)15/h4-6,8-10,12-13H,1,7H2,2-3H3,(H,14,15)/b6-5-/t8-,9+,10-/m1/s1" 
YYA InChIKey         InChI                1.03  NEXZFPQXALQHRJ-YVAZZEHLSA-N                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YYA "SYSTEMATIC NAME" ACDLabs              12.01 "2,4,5-trideoxy-2-(methylamino)-4-[(2Z)-penta-2,4-dien-1-yl]-L-xylonic acid" 
YYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R,4R,6Z)-3-hydroxy-4-methyl-2-(methylamino)nona-6,8-dienoic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YYA "Create component"  2010-11-19 RCSB 
YYA "Modify descriptor" 2011-06-04 RCSB 
YYA "Modify backbone"   2023-11-03 PDBE 
# 
