data_6VC
#

_chem_comp.id                                   6VC
_chem_comp.name                                 "~{N}-[(2~{S})-1-[[(2~{S},3~{R},4~{S})-2,6-dimethyl-1,2,3-tris(oxidanyl)heptan-4-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-6-methyl-heptanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H40 N2 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Dihydroeponemycin bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-07-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       404.541
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6VC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5LF1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6VC  C5   C1   C  0  1  N  N  N  61.750  203.795  43.659   -3.626  -0.026  -0.408  C5    6VC   1  
6VC  C6   C2   C  0  1  N  N  N  62.823  203.204  42.797   -4.873  -0.091   0.477  C6    6VC   2  
6VC  C8   C3   C  0  1  N  N  N  61.869  205.303  43.613   -2.396  -0.195   0.445  C8    6VC   3  
6VC  O2   O1   O  0  1  N  N  N  61.515  205.854  42.545   -2.505  -0.352   1.642  O2    6VC   4  
6VC  N2   N1   N  0  1  N  N  N  62.246  205.938  44.743   -1.174  -0.172  -0.124  N2    6VC   5  
6VC  C9   C4   C  0  1  N  N  S  62.366  207.390  44.854    0.023  -0.336   0.706  C9    6VC   6  
6VC  C10  C5   C  0  1  N  N  N  61.617  208.049  46.024    0.305  -1.827   0.904  C10   6VC   7  
6VC  O3   O2   O  0  1  N  N  N  60.390  207.320  46.022    0.632  -2.421  -0.353  O3    6VC   8  
6VC  C12  C6   C  0  1  N  N  N  63.777  207.857  45.018    1.200   0.311   0.023  C12   6VC   9  
6VC  O4   O3   O  0  1  N  N  N  64.610  207.088  45.477    1.054   0.856  -1.051  O4    6VC  10  
6VC  N3   N2   N  0  1  N  N  N  63.959  209.132  44.672    2.415   0.285   0.605  N3    6VC  11  
6VC  C13  C7   C  0  1  N  N  S  65.233  209.792  44.722    3.559   0.914  -0.059  C13   6VC  12  
6VC  C21  C8   C  0  1  N  N  R  65.130  210.996  45.663    4.854   0.254   0.421  C211  6VC  13  
6VC  C22  C9   C  0  1  N  N  S  64.724  210.685  47.148    4.846  -1.226   0.032  C22   6VC  14  
6VC  C23  C10  C  0  1  N  N  N  64.920  211.943  48.082    6.194  -1.855   0.391  C23   6VC  15  
6VC  O6   O4   O  0  1  N  N  N  63.327  210.353  47.225    3.803  -1.899   0.741  O6    6VC  16  
6VC  C24  C11  C  0  1  N  N  N  65.450  209.464  47.755    4.607  -1.357  -1.473  C24   6VC  17  
6VC  O5   O5   O  0  1  N  N  N  64.145  211.861  45.077    4.951   0.373   1.841  O5    6VC  18  
6VC  C14  C12  C  0  1  N  N  N  65.672  210.184  43.292    3.591   2.405   0.282  C14   6VC  19  
6VC  C15  C13  C  0  1  N  N  N  65.771  209.000  42.324    2.355   3.089  -0.306  C15   6VC  20  
6VC  C16  C14  C  0  1  N  N  N  66.072  209.530  40.919    2.321   4.552   0.139  C16   6VC  21  
6VC  C20  C15  C  0  1  N  N  N  66.836  208.025  42.763    2.414   3.022  -1.834  C20   6VC  22  
6VC  C1   C16  C  0  1  N  N  N  64.089  203.103  43.641   -6.123   0.080  -0.389  C1    6VC  23  
6VC  C2   C17  C  0  1  N  N  N  64.804  201.773  43.445   -7.369   0.015   0.495  C2    6VC  24  
6VC  C3   C18  C  0  1  N  N  N  65.937  201.701  42.417   -8.619   0.187  -0.370  C3    6VC  25  
6VC  C4   C19  C  0  1  N  N  N  66.225  203.076  41.762   -8.741  -0.999  -1.330  C4    6VC  26  
6VC  C7   C20  C  0  1  N  N  N  65.635  200.657  41.327   -9.857   0.247   0.527  C7    6VC  27  
6VC  O8   O6   O  0  1  N  N  N  64.917  209.151  49.058    4.599  -2.739  -1.836  O8    6VC  28  
6VC  H1   H1   H  0  1  N  N  N  60.762  203.490  43.283   -3.666  -0.823  -1.151  H1    6VC  29  
6VC  H2   H2   H  0  1  N  N  N  61.872  203.445  44.695   -3.589   0.939  -0.913  H2    6VC  30  
6VC  H3   H3   H  0  1  N  N  N  63.003  203.851  41.926   -4.910  -1.056   0.981  H3    6VC  31  
6VC  H4   H4   H  0  1  N  N  N  62.520  202.204  42.454   -4.833   0.706   1.219  H4    6VC  32  
6VC  H5   H5   H  0  1  N  N  N  62.455  205.384  45.549   -1.087  -0.046  -1.082  H5    6VC  33  
6VC  H6   H6   H  0  1  N  N  N  61.974  207.835  43.928   -0.139   0.136   1.675  H6    6VC  34  
6VC  H7   H7   H  0  1  N  N  N  62.160  207.920  46.972    1.141  -1.949   1.593  H7    6VC  35  
6VC  H8   H8   H  0  1  N  N  N  61.448  209.120  45.841   -0.580  -2.312   1.317  H8    6VC  36  
6VC  H9   H9   H  0  1  N  N  N  59.828  207.642  46.717    0.823  -3.368  -0.303  H9    6VC  37  
6VC  H10  H10  H  0  1  N  N  N  63.166  209.656  44.361    2.532  -0.151   1.464  H10   6VC  38  
6VC  H11  H11  H  0  1  N  N  N  65.986  209.102  45.130    3.467   0.790  -1.138  H11   6VC  39  
6VC  H12  H12  H  0  1  N  N  N  66.105  211.506  45.680    5.707   0.747  -0.045  H12   6VC  40  
6VC  H13  H13  H  0  1  N  N  N  64.626  211.686  49.110    6.398  -1.696   1.450  H13   6VC  41  
6VC  H14  H14  H  0  1  N  N  N  65.977  212.249  48.068    6.163  -2.924   0.183  H14   6VC  42  
6VC  H15  H15  H  0  1  N  N  N  64.294  212.771  47.718    6.981  -1.391  -0.204  H15   6VC  43  
6VC  H16  H16  H  0  1  N  N  N  63.094  210.167  48.127    2.912  -1.659   0.451  H16   6VC  44  
6VC  H17  H17  H  0  1  N  N  N  65.315  208.597  47.092    3.646  -0.909  -1.729  H17   6VC  45  
6VC  H18  H18  H  0  1  N  N  N  66.522  209.691  47.848    5.402  -0.844  -2.014  H18   6VC  46  
6VC  H19  H19  H  0  1  N  N  N  64.036  212.632  45.621    4.223  -0.044   2.322  H19   6VC  47  
6VC  H20  H20  H  0  1  N  N  N  66.660  210.665  43.353    3.594   2.530   1.365  H20   6VC  48  
6VC  H21  H21  H  0  1  N  N  N  64.940  210.900  42.889    4.490   2.855  -0.138  H21   6VC  49  
6VC  H22  H22  H  0  1  N  N  N  64.801  208.482  42.303    1.457   2.581   0.045  H22   6VC  50  
6VC  H23  H23  H  0  1  N  N  N  65.286  210.238  40.617    1.441   5.039  -0.280  H23   6VC  51  
6VC  H24  H24  H  0  1  N  N  N  67.045  210.042  40.921    2.279   4.600   1.227  H24   6VC  52  
6VC  H25  H25  H  0  1  N  N  N  66.101  208.690  40.209    3.219   5.060  -0.212  H25   6VC  53  
6VC  H26  H26  H  0  1  N  N  N  66.602  207.656  43.773    2.438   1.980  -2.151  H26   6VC  54  
6VC  H27  H27  H  0  1  N  N  N  66.869  207.178  42.062    1.534   3.509  -2.253  H27   6VC  55  
6VC  H28  H28  H  0  1  N  N  N  67.813  208.530  42.774    3.312   3.530  -2.185  H28   6VC  56  
6VC  H29  H29  H  0  1  N  N  N  64.771  203.918  43.356   -6.085   1.046  -0.894  H29   6VC  57  
6VC  H30  H30  H  0  1  N  N  N  63.817  203.206  44.702   -6.162  -0.716  -1.132  H30   6VC  58  
6VC  H31  H31  H  0  1  N  N  N  64.044  201.036  43.144   -7.406  -0.950   1.000  H31   6VC  59  
6VC  H32  H32  H  0  1  N  N  N  65.229  201.485  44.418   -7.330   0.812   1.238  H32   6VC  60  
6VC  H33  H33  H  0  1  N  N  N  66.850  201.384  42.942   -8.540   1.111  -0.943  H33   6VC  61  
6VC  H34  H34  H  0  1  N  N  N  66.440  203.818  42.545   -9.632  -0.876  -1.947  H34   6VC  62  
6VC  H35  H35  H  0  1  N  N  N  67.093  202.988  41.092   -7.859  -1.041  -1.969  H35   6VC  63  
6VC  H36  H36  H  0  1  N  N  N  65.346  203.398  41.184   -8.820  -1.923  -0.757  H36   6VC  64  
6VC  H37  H37  H  0  1  N  N  N  65.431  199.684  41.797   -9.769   1.092   1.210  H37   6VC  65  
6VC  H38  H38  H  0  1  N  N  N  64.756  200.975  40.748  -10.747   0.369  -0.090  H38   6VC  66  
6VC  H39  H39  H  0  1  N  N  N  66.502  200.566  40.656   -9.936  -0.677   1.099  H39   6VC  67  
6VC  H40  H40  H  0  1  N  N  N  65.374  208.399  49.415    4.452  -2.898  -2.779  H40   6VC  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6VC  C16  C15  SING  N  N   1  
6VC  C7   C3   SING  N  N   2  
6VC  C4   C3   SING  N  N   3  
6VC  C15  C20  SING  N  N   4  
6VC  C15  C14  SING  N  N   5  
6VC  C3   C2   SING  N  N   6  
6VC  O2   C8   DOUB  N  N   7  
6VC  C6   C1   SING  N  N   8  
6VC  C6   C5   SING  N  N   9  
6VC  C14  C13  SING  N  N  10  
6VC  C2   C1   SING  N  N  11  
6VC  C8   C5   SING  N  N  12  
6VC  C8   N2   SING  N  N  13  
6VC  N3   C13  SING  N  N  14  
6VC  N3   C12  SING  N  N  15  
6VC  C13  C21  SING  N  N  16  
6VC  N2   C9   SING  N  N  17  
6VC  C9   C12  SING  N  N  18  
6VC  C9   C10  SING  N  N  19  
6VC  C12  O4   DOUB  N  N  20  
6VC  O5   C21  SING  N  N  21  
6VC  C21  C22  SING  N  N  22  
6VC  O3   C10  SING  N  N  23  
6VC  C22  O6   SING  N  N  24  
6VC  C22  C24  SING  N  N  25  
6VC  C22  C23  SING  N  N  26  
6VC  C24  O8   SING  N  N  27  
6VC  C5   H1   SING  N  N  28  
6VC  C5   H2   SING  N  N  29  
6VC  C6   H3   SING  N  N  30  
6VC  C6   H4   SING  N  N  31  
6VC  N2   H5   SING  N  N  32  
6VC  C9   H6   SING  N  N  33  
6VC  C10  H7   SING  N  N  34  
6VC  C10  H8   SING  N  N  35  
6VC  O3   H9   SING  N  N  36  
6VC  N3   H10  SING  N  N  37  
6VC  C13  H11  SING  N  N  38  
6VC  C21  H12  SING  N  N  39  
6VC  C23  H13  SING  N  N  40  
6VC  C23  H14  SING  N  N  41  
6VC  C23  H15  SING  N  N  42  
6VC  O6   H16  SING  N  N  43  
6VC  C24  H17  SING  N  N  44  
6VC  C24  H18  SING  N  N  45  
6VC  O5   H19  SING  N  N  46  
6VC  C14  H20  SING  N  N  47  
6VC  C14  H21  SING  N  N  48  
6VC  C15  H22  SING  N  N  49  
6VC  C16  H23  SING  N  N  50  
6VC  C16  H24  SING  N  N  51  
6VC  C16  H25  SING  N  N  52  
6VC  C20  H26  SING  N  N  53  
6VC  C20  H27  SING  N  N  54  
6VC  C20  H28  SING  N  N  55  
6VC  C1   H29  SING  N  N  56  
6VC  C1   H30  SING  N  N  57  
6VC  C2   H31  SING  N  N  58  
6VC  C2   H32  SING  N  N  59  
6VC  C3   H33  SING  N  N  60  
6VC  C4   H34  SING  N  N  61  
6VC  C4   H35  SING  N  N  62  
6VC  C4   H36  SING  N  N  63  
6VC  C7   H37  SING  N  N  64  
6VC  C7   H38  SING  N  N  65  
6VC  C7   H39  SING  N  N  66  
6VC  O8   H40  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6VC  InChI             InChI                 1.03   "InChI=1S/C20H40N2O6/c1-13(2)8-6-7-9-17(25)21-16(11-23)19(27)22-15(10-14(3)4)18(26)20(5,28)12-24/h13-16,18,23-24,26,28H,6-12H2,1-5H3,(H,21,25)(H,22,27)/t15-,16-,18+,20-/m0/s1"  
6VC  InChIKey          InChI                 1.03   FMSNRWQINDLCNQ-YTXYEVPYSA-N  
6VC  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)[C@@H](O)[C@@](C)(O)CO"  
6VC  SMILES            CACTVS                3.385  "CC(C)CCCCC(=O)N[CH](CO)C(=O)N[CH](CC(C)C)[CH](O)[C](C)(O)CO"  
6VC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)[C@H]([C@](C)(CO)O)O"  
6VC  SMILES            "OpenEye OEToolkits"  2.0.5  "CC(C)CCCCC(=O)NC(CO)C(=O)NC(CC(C)C)C(C(C)(CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          6VC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-1-[[(2~{S},3~{R},4~{S})-2,6-dimethyl-1,2,3-tris(oxidanyl)heptan-4-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-6-methyl-heptanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6VC  "Create component"  2016-07-05  EBI   
6VC  "Initial release"   2016-08-17  RCSB  
6VC  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6VC
_pdbx_chem_comp_synonyms.name        "Dihydroeponemycin bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
