data_A9C
#

_chem_comp.id                                   A9C
_chem_comp.name                                 "N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H45 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-24
_chem_comp.pdbx_modified_date                   2019-10-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       571.753
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A9C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6IJR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A9C  CAV  C1   C  0  1  N  N  N  -11.754  -25.647   8.097   6.760  -0.561   0.103  CAV  A9C   1  
A9C  CAT  C2   C  0  1  N  N  N  -12.388  -26.416   9.260   7.652  -1.055   1.244  CAT  A9C   2  
A9C  NBN  N1   N  0  1  N  N  N  -13.570  -25.781   9.837   8.537   0.036   1.679  NBN  A9C   3  
A9C  CAA  C3   C  0  1  N  N  N  -13.395  -24.446  10.424   9.465   0.419   0.607  CAA  A9C   4  
A9C  CAU  C4   C  0  1  N  N  N  -14.517  -25.653   8.682   7.755   1.192   2.137  CAU  A9C   5  
A9C  CAW  C5   C  0  1  N  N  N  -13.944  -24.970   7.425   6.863   1.687   0.996  CAW  A9C   6  
A9C  NBO  N2   N  0  1  N  N  N  -12.710  -25.638   6.975   5.979   0.596   0.562  NBO  A9C   7  
A9C  CAZ  C6   C  0  1  N  N  N  -12.137  -24.977   5.770   5.053   1.054  -0.483  CAZ  A9C   8  
A9C  CBH  C7   C  0  1  Y  N  N  -11.141  -25.916   5.117   4.009  -0.005  -0.729  CBH  A9C   9  
A9C  CAM  C8   C  0  1  Y  N  N   -9.757  -25.759   5.279   2.832   0.007  -0.003  CAM  A9C  10  
A9C  CAO  C9   C  0  1  Y  N  N   -8.878  -26.665   4.683   1.872  -0.959  -0.223  CAO  A9C  11  
A9C  CAL  C10  C  0  1  Y  N  N  -11.627  -26.985   4.368   4.231  -0.982  -1.683  CAL  A9C  12  
A9C  CAN  C11  C  0  1  Y  N  N  -10.741  -27.888   3.787   3.277  -1.951  -1.917  CAN  A9C  13  
A9C  CBJ  C12  C  0  1  Y  N  N   -9.371  -27.723   3.913   2.091  -1.951  -1.180  CBJ  A9C  14  
A9C  CBE  C13  C  0  1  N  N  N   -8.460  -28.740   3.303   1.065  -2.986  -1.425  CBE  A9C  15  
A9C  OAF  O1   O  0  1  N  N  N   -7.420  -28.961   3.900   1.252  -3.840  -2.270  OAF  A9C  16  
A9C  NBB  N3   N  0  1  N  N  N   -8.792  -29.439   2.215  -0.079  -2.983  -0.713  NBB  A9C  17  
A9C  CAX  C14  C  0  1  N  N  N   -7.934  -30.463   1.648  -1.096  -4.009  -0.955  CAX  A9C  18  
A9C  CBG  C15  C  0  1  Y  N  N   -7.089  -29.928   0.525  -2.268  -3.783  -0.035  CBG  A9C  19  
A9C  CAP  C16  C  0  1  Y  N  N   -7.676  -29.155  -0.484  -3.317  -2.977  -0.437  CAP  A9C  20  
A9C  CAJ  C17  C  0  1  Y  N  N   -5.726  -30.237   0.493  -2.297  -4.385   1.209  CAJ  A9C  21  
A9C  CAI  C18  C  0  1  Y  N  N   -4.947  -29.759  -0.557  -3.372  -4.178   2.053  CAI  A9C  22  
A9C  CAK  C19  C  0  1  Y  N  N   -5.526  -28.980  -1.565  -4.418  -3.368   1.653  CAK  A9C  23  
A9C  CBI  C20  C  0  1  Y  N  N   -6.887  -28.680  -1.530  -4.391  -2.769   0.407  CBI  A9C  24  
A9C  CAY  C21  C  0  1  N  N  N   -7.490  -27.832  -2.625  -5.532  -1.885  -0.028  CAY  A9C  25  
A9C  OBD  O2   O  0  1  N  N  N   -8.731  -28.365  -3.124  -5.266  -0.537   0.362  OBD  A9C  26  
A9C  CBM  C22  C  0  1  N  N  S   -9.375  -27.485  -4.051  -6.292   0.388  -0.006  CBM  A9C  27  
A9C  CAS  C23  C  0  1  N  N  N   -8.746  -27.652  -5.434  -7.309   0.534   1.145  CAS  A9C  28  
A9C  CAQ  C24  C  0  1  N  N  N   -9.653  -28.567  -6.245  -7.698   2.033   1.120  CAQ  A9C  29  
A9C  CAR  C25  C  0  1  N  N  N  -10.916  -28.783  -5.423  -6.356   2.728   0.781  CAR  A9C  30  
A9C  CBL  C26  C  0  1  N  N  R  -10.865  -27.715  -4.333  -5.686   1.783  -0.238  CBL  A9C  31  
A9C  NBC  N4   N  0  1  N  N  N  -11.861  -27.977  -3.294  -4.239   1.745  -0.013  NBC  A9C  32  
A9C  CBF  C27  C  0  1  N  N  N  -11.921  -29.011  -2.446  -3.443   2.666  -0.590  CBF  A9C  33  
A9C  OAG  O3   O  0  1  N  N  N  -11.124  -29.926  -2.394  -3.925   3.528  -1.299  OAG  A9C  34  
A9C  CBK  C28  C  0  1  N  N  N  -13.091  -29.111  -1.520  -1.984   2.628  -0.362  CBK  A9C  35  
A9C  CAH  C29  C  0  1  N  N  N  -14.163  -28.194  -1.910  -1.415   1.613   0.472  CAH  A9C  36  
A9C  NAE  N5   N  0  1  N  N  N  -15.042  -27.527  -2.249  -0.965   0.807   1.135  NAE  A9C  37  
A9C  CBA  C30  C  0  1  N  N  N  -12.748  -29.127  -0.015  -1.188   3.548  -0.940  CBA  A9C  38  
A9C  CBP  C31  C  0  1  N  N  N  -13.947  -29.573   0.870   0.280   3.592  -0.603  CBP  A9C  39  
A9C  CAC  C32  C  0  1  N  N  N  -13.419  -29.892   2.289   0.931   4.782  -1.313  CAC  A9C  40  
A9C  CAD  C33  C  0  1  N  N  N  -14.676  -30.834   0.356   0.453   3.745   0.909  CAD  A9C  41  
A9C  CAB  C34  C  0  1  N  N  N  -14.985  -28.447   1.000   0.949   2.296  -1.064  CAB  A9C  42  
A9C  H1   H1   H  0  1  N  N  N  -10.822  -26.142   7.788   7.381  -0.267  -0.743  H1   A9C  43  
A9C  H2   H2   H  0  1  N  N  N  -11.535  -24.615   8.408   6.084  -1.359  -0.202  H2   A9C  44  
A9C  H3   H3   H  0  1  N  N  N  -12.678  -27.412   8.895   7.030  -1.374   2.080  H3   A9C  45  
A9C  H4   H4   H  0  1  N  N  N  -11.633  -26.521  10.053   8.254  -1.895   0.897  H4   A9C  46  
A9C  H6   H6   H  0  1  N  N  N  -12.703  -24.508  11.277   8.899   0.754  -0.262  H6   A9C  47  
A9C  H7   H7   H  0  1  N  N  N  -12.983  -23.764   9.666  10.108   1.228   0.955  H7   A9C  48  
A9C  H8   H8   H  0  1  N  N  N  -14.368  -24.067  10.769  10.078  -0.440   0.333  H8   A9C  49  
A9C  H9   H9   H  0  1  N  N  N  -15.385  -25.068   9.019   7.134   0.899   2.984  H9   A9C  50  
A9C  H10  H10  H  0  1  N  N  N  -14.844  -26.664   8.399   8.432   1.991   2.442  H10  A9C  51  
A9C  H11  H11  H  0  1  N  N  N  -13.719  -23.919   7.658   6.261   2.527   1.343  H11  A9C  52  
A9C  H12  H12  H  0  1  N  N  N  -14.691  -25.015   6.619   7.485   2.006   0.160  H12  A9C  53  
A9C  H14  H14  H  0  1  N  N  N  -11.628  -24.048   6.066   4.567   1.975  -0.160  H14  A9C  54  
A9C  H15  H15  H  0  1  N  N  N  -12.943  -24.743   5.059   5.607   1.239  -1.404  H15  A9C  55  
A9C  H16  H16  H  0  1  N  N  N   -9.371  -24.938   5.865   2.663   0.775   0.738  H16  A9C  56  
A9C  H17  H17  H  0  1  N  N  N   -7.813  -26.548   4.817   0.953  -0.949   0.345  H17  A9C  57  
A9C  H18  H18  H  0  1  N  N  N  -12.691  -27.113   4.238   5.152  -0.986  -2.247  H18  A9C  58  
A9C  H19  H19  H  0  1  N  N  N  -11.127  -28.729   3.230   3.453  -2.715  -2.659  H19  A9C  59  
A9C  H20  H20  H  0  1  N  N  N   -9.668  -29.249   1.772  -0.229  -2.301  -0.039  H20  A9C  60  
A9C  H21  H21  H  0  1  N  N  N   -8.562  -31.280   1.263  -1.431  -3.951  -1.991  H21  A9C  61  
A9C  H22  H22  H  0  1  N  N  N   -7.273  -30.850   2.437  -0.671  -4.995  -0.766  H22  A9C  62  
A9C  H23  H23  H  0  1  N  N  N   -8.732  -28.929  -0.452  -3.296  -2.510  -1.411  H23  A9C  63  
A9C  H24  H24  H  0  1  N  N  N   -5.283  -30.839   1.273  -1.479  -5.018   1.521  H24  A9C  64  
A9C  H25  H25  H  0  1  N  N  N   -3.893  -29.990  -0.594  -3.394  -4.649   3.024  H25  A9C  65  
A9C  H26  H26  H  0  1  N  N  N   -4.915  -28.609  -2.375  -5.258  -3.205   2.312  H26  A9C  66  
A9C  H27  H27  H  0  1  N  N  N   -6.774  -27.771  -3.457  -5.637  -1.936  -1.112  H27  A9C  67  
A9C  H28  H28  H  0  1  N  N  N   -7.675  -26.824  -2.227  -6.455  -2.225   0.442  H28  A9C  68  
A9C  H29  H29  H  0  1  N  N  N   -9.239  -26.442  -3.730  -6.797   0.045  -0.909  H29  A9C  69  
A9C  H30  H30  H  0  1  N  N  N   -7.747  -28.102  -5.340  -8.184  -0.090   0.962  H30  A9C  70  
A9C  H31  H31  H  0  1  N  N  N   -8.662  -26.673  -5.928  -6.848   0.273   2.097  H31  A9C  71  
A9C  H32  H32  H  0  1  N  N  N   -9.904  -28.095  -7.206  -8.440   2.227   0.345  H32  A9C  72  
A9C  H33  H33  H  0  1  N  N  N   -9.152  -29.529  -6.429  -8.064   2.353   2.095  H33  A9C  73  
A9C  H34  H34  H  0  1  N  N  N  -11.811  -28.654  -6.049  -6.536   3.706   0.333  H34  A9C  74  
A9C  H35  H35  H  0  1  N  N  N  -10.921  -29.789  -4.979  -5.740   2.825   1.675  H35  A9C  75  
A9C  H36  H36  H  0  1  N  N  N  -11.199  -26.793  -4.830  -5.897   2.118  -1.254  H36  A9C  76  
A9C  H37  H37  H  0  1  N  N  N  -12.589  -27.297  -3.206  -3.854   1.057   0.553  H37  A9C  77  
A9C  H39  H39  H  0  1  N  N  N  -11.780  -28.858   0.381  -1.602   4.255  -1.644  H39  A9C  78  
A9C  H41  H41  H  0  1  N  N  N  -14.255  -30.210   2.929   0.455   5.706  -0.984  H41  A9C  79  
A9C  H42  H42  H  0  1  N  N  N  -12.675  -30.700   2.230   1.993   4.813  -1.069  H42  A9C  80  
A9C  H43  H43  H  0  1  N  N  N  -12.951  -28.993   2.717   0.808   4.673  -2.391  H43  A9C  81  
A9C  H44  H44  H  0  1  N  N  N  -15.506  -31.081   1.035  -0.011   2.898   1.415  H44  A9C  82  
A9C  H45  H45  H  0  1  N  N  N  -15.072  -30.643  -0.653   1.515   3.777   1.153  H45  A9C  83  
A9C  H46  H46  H  0  1  N  N  N  -13.970  -31.676   0.320  -0.023   4.669   1.238  H46  A9C  84  
A9C  H47  H47  H  0  1  N  N  N  -15.820  -28.788   1.629   0.901   2.229  -2.151  H47  A9C  85  
A9C  H48  H48  H  0  1  N  N  N  -14.515  -27.566   1.461   1.991   2.290  -0.745  H48  A9C  86  
A9C  H49  H49  H  0  1  N  N  N  -15.363  -28.180   0.002   0.430   1.444  -0.625  H49  A9C  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A9C  CAQ  CAS  SING  N  N   1  
A9C  CAQ  CAR  SING  N  N   2  
A9C  CAS  CBM  SING  N  N   3  
A9C  CAR  CBL  SING  N  N   4  
A9C  CBL  CBM  SING  N  N   5  
A9C  CBL  NBC  SING  N  N   6  
A9C  CBM  OBD  SING  N  N   7  
A9C  NBC  CBF  SING  N  N   8  
A9C  OBD  CAY  SING  N  N   9  
A9C  CAY  CBI  SING  N  N  10  
A9C  CBF  OAG  DOUB  N  N  11  
A9C  CBF  CBK  SING  N  N  12  
A9C  NAE  CAH  TRIP  N  N  13  
A9C  CAH  CBK  SING  N  N  14  
A9C  CAK  CBI  DOUB  Y  N  15  
A9C  CAK  CAI  SING  Y  N  16  
A9C  CBI  CAP  SING  Y  N  17  
A9C  CBK  CBA  DOUB  N  E  18  
A9C  CAI  CAJ  DOUB  Y  N  19  
A9C  CAP  CBG  DOUB  Y  N  20  
A9C  CBA  CBP  SING  N  N  21  
A9C  CAD  CBP  SING  N  N  22  
A9C  CAJ  CBG  SING  Y  N  23  
A9C  CBG  CAX  SING  N  N  24  
A9C  CBP  CAB  SING  N  N  25  
A9C  CBP  CAC  SING  N  N  26  
A9C  CAX  NBB  SING  N  N  27  
A9C  NBB  CBE  SING  N  N  28  
A9C  CBE  OAF  DOUB  N  N  29  
A9C  CBE  CBJ  SING  N  N  30  
A9C  CAN  CBJ  DOUB  Y  N  31  
A9C  CAN  CAL  SING  Y  N  32  
A9C  CBJ  CAO  SING  Y  N  33  
A9C  CAL  CBH  DOUB  Y  N  34  
A9C  CAO  CAM  DOUB  Y  N  35  
A9C  CBH  CAM  SING  Y  N  36  
A9C  CBH  CAZ  SING  N  N  37  
A9C  CAZ  NBO  SING  N  N  38  
A9C  NBO  CAW  SING  N  N  39  
A9C  NBO  CAV  SING  N  N  40  
A9C  CAW  CAU  SING  N  N  41  
A9C  CAV  CAT  SING  N  N  42  
A9C  CAU  NBN  SING  N  N  43  
A9C  CAT  NBN  SING  N  N  44  
A9C  NBN  CAA  SING  N  N  45  
A9C  CAV  H1   SING  N  N  46  
A9C  CAV  H2   SING  N  N  47  
A9C  CAT  H3   SING  N  N  48  
A9C  CAT  H4   SING  N  N  49  
A9C  CAA  H6   SING  N  N  50  
A9C  CAA  H7   SING  N  N  51  
A9C  CAA  H8   SING  N  N  52  
A9C  CAU  H9   SING  N  N  53  
A9C  CAU  H10  SING  N  N  54  
A9C  CAW  H11  SING  N  N  55  
A9C  CAW  H12  SING  N  N  56  
A9C  CAZ  H14  SING  N  N  57  
A9C  CAZ  H15  SING  N  N  58  
A9C  CAM  H16  SING  N  N  59  
A9C  CAO  H17  SING  N  N  60  
A9C  CAL  H18  SING  N  N  61  
A9C  CAN  H19  SING  N  N  62  
A9C  NBB  H20  SING  N  N  63  
A9C  CAX  H21  SING  N  N  64  
A9C  CAX  H22  SING  N  N  65  
A9C  CAP  H23  SING  N  N  66  
A9C  CAJ  H24  SING  N  N  67  
A9C  CAI  H25  SING  N  N  68  
A9C  CAK  H26  SING  N  N  69  
A9C  CAY  H27  SING  N  N  70  
A9C  CAY  H28  SING  N  N  71  
A9C  CBM  H29  SING  N  N  72  
A9C  CAS  H30  SING  N  N  73  
A9C  CAS  H31  SING  N  N  74  
A9C  CAQ  H32  SING  N  N  75  
A9C  CAQ  H33  SING  N  N  76  
A9C  CAR  H34  SING  N  N  77  
A9C  CAR  H35  SING  N  N  78  
A9C  CBL  H36  SING  N  N  79  
A9C  NBC  H37  SING  N  N  80  
A9C  CBA  H39  SING  N  N  81  
A9C  CAC  H41  SING  N  N  82  
A9C  CAC  H42  SING  N  N  83  
A9C  CAC  H43  SING  N  N  84  
A9C  CAD  H44  SING  N  N  85  
A9C  CAD  H45  SING  N  N  86  
A9C  CAD  H46  SING  N  N  87  
A9C  CAB  H47  SING  N  N  88  
A9C  CAB  H48  SING  N  N  89  
A9C  CAB  H49  SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A9C  SMILES            ACDLabs               12.01  "C1CN(C)CCN1Cc2ccc(cc2)C(=O)NCc3cc(ccc3)COC4CCCC4NC(=O)\C(=C\C(C)(C)C)C#N"  
A9C  InChI             InChI                 1.03   "InChI=1S/C34H45N5O3/c1-34(2,3)20-29(21-35)33(41)37-30-9-6-10-31(30)42-24-27-8-5-7-26(19-27)22-36-32(40)28-13-11-25(12-14-28)23-39-17-15-38(4)16-18-39/h5,7-8,11-14,19-20,30-31H,6,9-10,15-18,22-24H2,1-4H3,(H,36,40)(H,37,41)/t30-,31+/m1/s1"  
A9C  InChIKey          InChI                 1.03   BUZJOXNDWIIWSG-JSOSNVBQSA-N  
A9C  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[C@H]4CCC[C@H]4NC(=O)\C(=C\C(C)(C)C)C#N)c3"  
A9C  SMILES            CACTVS                3.385  "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[CH]4CCC[CH]4NC(=O)C(=CC(C)(C)C)C#N)c3"  
A9C  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)(C)/C=C(\C#N)/C(=O)N[C@@H]1CCC[C@@H]1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C"  
A9C  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)(C)C=C(C#N)C(=O)NC1CCCC1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A9C  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide"  
A9C  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[[3-[[(1~{S},2~{R})-2-[[(~{E})-2-cyano-4,4-dimethyl-pent-2-enoyl]amino]cyclopentyl]oxymethyl]phenyl]methyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A9C  "Create component"  2018-10-24  PDBJ  
A9C  "Initial release"   2019-10-16  RCSB  
##
