data_C9D
#

_chem_comp.id                                   C9D
_chem_comp.name                                 "(2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H21 N5 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "open form - WCK 5153"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       379.389
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6B1X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C9D  OAF  O1   O  0  1  N  N  N   -8.863  -3.010  -1.187  -7.275  -0.826   0.754  OAF  C9D   1  
C9D  SAY  S1   S  0  1  N  N  N   -9.211  -1.652  -0.651  -6.471   0.035  -0.040  SAY  C9D   2  
C9D  OAD  O2   O  0  1  N  N  N   -8.135  -1.479   0.379  -6.594  -0.462  -1.473  OAD  C9D   3  
C9D  OAE  O3   O  0  1  N  N  N   -9.144  -0.609  -1.716  -6.652   1.444  -0.087  OAE  C9D   4  
C9D  OAR  O4   O  0  1  N  N  N  -10.595  -1.598  -0.024  -5.031  -0.198   0.396  OAR  C9D   5  
C9D  NAQ  N1   N  0  1  N  N  N  -10.808  -2.617   1.001  -4.075   0.748  -0.178  NAQ  C9D   6  
C9D  CAU  C1   C  0  1  N  N  R  -11.544  -2.128   2.197  -2.710   0.464   0.285  CAU  C9D   7  
C9D  CAJ  C2   C  0  1  N  N  N  -12.719  -1.202   1.938  -1.904   1.764   0.327  CAJ  C9D   8  
C9D  CB   C3   C  0  1  N  N  N  -12.266   0.174   1.616  -0.491   1.474   0.841  CB   C9D   9  
C9D  CAM  C4   C  0  1  N  N  N  -10.616  -1.460   3.279  -2.037  -0.518  -0.679  CAM  C9D  10  
C9D  N    N2   N  0  1  N  N  N  -10.324  -0.023   2.920  -0.635  -0.691  -0.276  N    C9D  11  
C9D  CAG  C5   C  0  1  N  N  N   -9.087   0.425   2.640  -0.130  -1.921  -0.058  CAG  C9D  12  
C9D  OAA  O5   O  0  1  N  N  N   -8.782   1.469   2.085  -0.857  -2.891  -0.097  OAA  C9D  13  
C9D  CA   C6   C  0  1  N  N  S  -11.524   0.777   2.825   0.206   0.503  -0.117  CA   C9D  14  
C9D  C    C7   C  0  1  N  N  N  -12.154   1.080   4.003   1.544   0.106   0.452  C    C9D  15  
C9D  O    O6   O  0  1  N  N  N  -11.728   0.726   5.118   1.601  -0.669   1.383  O    C9D  16  
C9D  NAP  N3   N  0  1  N  N  N  -13.388   1.621   3.873   2.677   0.613  -0.073  NAP  C9D  17  
C9D  NAO  N4   N  0  1  N  N  N  -14.069   1.971   5.046   3.921   0.244   0.456  NAO  C9D  18  
C9D  CAS  C8   C  0  1  N  N  N  -14.056   3.277   5.387   5.054   0.751  -0.070  CAS  C9D  19  
C9D  OAB  O7   O  0  1  N  N  N  -13.202   4.084   5.046   4.997   1.526  -1.001  OAB  C9D  20  
C9D  CAV  C9   C  0  1  N  N  R  -15.051   3.636   6.504   6.392   0.354   0.499  CAV  C9D  21  
C9D  CAI  C10  C  0  1  N  N  N  -16.321   4.190   5.896   7.535   1.006  -0.312  CAI  C9D  22  
C9D  CAH  C11  C  0  1  N  N  N  -16.017   5.634   5.689   8.601  -0.116  -0.373  CAH  C9D  23  
C9D  NAN  N5   N  0  1  N  N  N  -14.976   5.999   6.685   7.787  -1.350  -0.523  NAN  C9D  24  
C9D  CAL  C12  C  0  1  N  N  N  -14.549   4.773   7.360   6.608  -1.163   0.349  CAL  C9D  25  
C9D  H1   H1   H  0  1  N  N  N  -11.331  -3.367   0.595  -4.123   0.744  -1.186  H1   C9D  26  
C9D  H2   H2   H  0  1  N  N  N  -11.965  -3.019   2.685  -2.748   0.026   1.282  H2   C9D  27  
C9D  H3   H3   H  0  1  N  N  N  -13.353  -1.169   2.836  -1.845   2.188  -0.675  H3   C9D  28  
C9D  H4   H4   H  0  1  N  N  N  -13.303  -1.593   1.092  -2.394   2.474   0.994  H4   C9D  29  
C9D  H5   H5   H  0  1  N  N  N  -11.588   0.142   0.751   0.075   2.404   0.893  H5   C9D  30  
C9D  H6   H6   H  0  1  N  N  N  -13.139   0.799   1.375  -0.550   1.027   1.833  H6   C9D  31  
C9D  H7   H7   H  0  1  N  N  N  -11.120  -1.493   4.256  -2.550  -1.479  -0.639  H7   C9D  32  
C9D  H8   H8   H  0  1  N  N  N   -9.669  -2.017   3.336  -2.082  -0.123  -1.694  H8   C9D  33  
C9D  H9   H9   H  0  1  N  Y  N   -8.269  -0.213   2.941   0.923  -2.043   0.153  H9   C9D  34  
C9D  H10  H10  H  0  1  N  N  N  -11.168   1.744   2.441   0.347   0.983  -1.086  H10  C9D  35  
C9D  H11  H11  H  0  1  N  N  N  -13.798   1.766   2.973   2.632   1.233  -0.818  H11  C9D  36  
C9D  H12  H12  H  0  1  N  N  N  -14.541   1.288   5.603   3.967  -0.376   1.200  H12  C9D  37  
C9D  H13  H13  H  0  1  N  N  N  -15.269   2.751   7.120   6.457   0.643   1.548  H13  C9D  38  
C9D  H14  H14  H  0  1  N  N  N  -17.171   4.063   6.582   7.195   1.271  -1.313  H14  C9D  39  
C9D  H15  H15  H  0  1  N  N  N  -16.545   3.696   4.939   7.923   1.883   0.206  H15  C9D  40  
C9D  H16  H16  H  0  1  N  N  N  -15.640   5.800   4.669   9.255   0.021  -1.234  H16  C9D  41  
C9D  H17  H17  H  0  1  N  N  N  -16.922   6.238   5.848   9.180  -0.147   0.550  H17  C9D  42  
C9D  H18  H18  H  0  1  N  N  N  -14.196   6.421   6.222   7.509  -1.485  -1.484  H18  C9D  43  
C9D  H20  H20  H  0  1  N  N  N  -14.988   4.717   8.367   6.793  -1.611   1.326  H20  C9D  44  
C9D  H21  H21  H  0  1  N  N  N  -13.452   4.740   7.436   5.730  -1.620  -0.110  H21  C9D  45  
C9D  H22  H22  H  0  1  N  N  N   -7.576  -2.247   0.386  -7.478  -0.360  -1.851  H22  C9D  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C9D  OAE  SAY  DOUB  N  N   1  
C9D  OAF  SAY  DOUB  N  N   2  
C9D  SAY  OAR  SING  N  N   3  
C9D  SAY  OAD  SING  N  N   4  
C9D  OAR  NAQ  SING  N  N   5  
C9D  NAQ  CAU  SING  N  N   6  
C9D  CB   CAJ  SING  N  N   7  
C9D  CB   CA   SING  N  N   8  
C9D  CAJ  CAU  SING  N  N   9  
C9D  OAA  CAG  DOUB  N  N  10  
C9D  CAU  CAM  SING  N  N  11  
C9D  CAG  N    SING  N  N  12  
C9D  CA   N    SING  N  N  13  
C9D  CA   C    SING  N  N  14  
C9D  N    CAM  SING  N  N  15  
C9D  NAP  C    SING  N  N  16  
C9D  NAP  NAO  SING  N  N  17  
C9D  C    O    DOUB  N  N  18  
C9D  NAO  CAS  SING  N  N  19  
C9D  OAB  CAS  DOUB  N  N  20  
C9D  CAS  CAV  SING  N  N  21  
C9D  CAH  CAI  SING  N  N  22  
C9D  CAH  NAN  SING  N  N  23  
C9D  CAI  CAV  SING  N  N  24  
C9D  CAV  CAL  SING  N  N  25  
C9D  NAN  CAL  SING  N  N  26  
C9D  NAQ  H1   SING  N  N  27  
C9D  CAU  H2   SING  N  N  28  
C9D  CAJ  H3   SING  N  N  29  
C9D  CAJ  H4   SING  N  N  30  
C9D  CB   H5   SING  N  N  31  
C9D  CB   H6   SING  N  N  32  
C9D  CAM  H7   SING  N  N  33  
C9D  CAM  H8   SING  N  N  34  
C9D  CAG  H9   SING  N  N  35  
C9D  CA   H10  SING  N  N  36  
C9D  NAP  H11  SING  N  N  37  
C9D  NAO  H12  SING  N  N  38  
C9D  CAV  H13  SING  N  N  39  
C9D  CAI  H14  SING  N  N  40  
C9D  CAI  H15  SING  N  N  41  
C9D  CAH  H16  SING  N  N  42  
C9D  CAH  H17  SING  N  N  43  
C9D  NAN  H18  SING  N  N  44  
C9D  CAL  H20  SING  N  N  45  
C9D  CAL  H21  SING  N  N  46  
C9D  OAD  H22  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C9D  SMILES            ACDLabs               12.01  "O=S(ONC1CN(C=O)C(CC1)C(=O)NNC(C2CNCC2)=O)(O)=O"  
C9D  InChI             InChI                 1.03   "InChI=1S/C12H21N5O7S/c18-7-17-6-9(16-24-25(21,22)23)1-2-10(17)12(20)15-14-11(19)8-3-4-13-5-8/h7-10,13,16H,1-6H2,(H,14,19)(H,15,20)(H,21,22,23)/t8-,9-,10+/m1/s1"  
C9D  InChIKey          InChI                 1.03   MPNPDELHXLJIKQ-BBBLOLIVSA-N  
C9D  SMILES_CANONICAL  CACTVS                3.385  "O[S](=O)(=O)ON[C@@H]1CC[C@H](N(C1)C=O)C(=O)NNC(=O)[C@@H]2CCNC2"  
C9D  SMILES            CACTVS                3.385  "O[S](=O)(=O)ON[CH]1CC[CH](N(C1)C=O)C(=O)NNC(=O)[CH]2CCNC2"  
C9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C(=O)NNC(=O)[C@@H]2CCNC2"  
C9D  SMILES            "OpenEye OEToolkits"  2.0.6  "C1CC(N(CC1NOS(=O)(=O)O)C=O)C(=O)NNC(=O)C2CCNC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide"  
C9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[(3~{R},6~{S})-1-methanoyl-6-[[[(3~{R})-pyrrolidin-3-yl]carbonylamino]carbamoyl]piperidin-3-yl]amino] hydrogen sulfate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C9D  "Create component"  2017-09-20  RCSB  
C9D  "Initial release"   2018-08-01  RCSB  
C9D  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     C9D
_pdbx_chem_comp_synonyms.name        "open form - WCK 5153"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
