data_H3D
#

_chem_comp.id                                   H3D
_chem_comp.name                                 "N-[1-(2,3-dihydro-1,4-benzodioxin-6-yl)cyclopentyl]acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H19 N O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-11
_chem_comp.pdbx_modified_date                   2019-03-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       261.316
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H3D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QHA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H3D  C4   C1   C  0  1  N  N  N  37.466  -42.647  73.524  -1.984   1.508  -1.424  C4   H3D   1  
H3D  C5   C2   C  0  1  N  N  N  36.796  -42.664  77.135  -2.615  -1.668   0.428  C5   H3D   2  
H3D  C6   C3   C  0  1  N  N  N  36.798  -41.519  78.124  -3.591  -2.809   0.298  C6   H3D   3  
H3D  C7   C4   C  0  1  Y  N  N  35.429  -43.703  74.359  -0.281   0.045  -0.335  C7   H3D   4  
H3D  C8   C5   C  0  1  Y  N  N  34.353  -42.872  74.712   0.694   0.875   0.187  C8   H3D   5  
H3D  C10  C6   C  0  1  Y  N  N  32.780  -44.363  73.575   2.374  -0.746  -0.383  C10  H3D   6  
H3D  C13  C7   C  0  1  N  N  N  30.427  -44.182  74.037   4.667  -0.139  -0.219  C13  H3D   7  
H3D  O    O1   O  0  1  N  N  N  36.701  -43.802  77.505  -1.845  -1.633   1.364  O    H3D   8  
H3D  N    N1   N  0  1  N  N  N  36.896  -42.368  75.840  -2.598  -0.687  -0.495  N    H3D   9  
H3D  C3   C8   C  0  1  N  N  N  36.864  -43.345  74.739  -1.725   0.476  -0.313  C3   H3D  10  
H3D  C2   C9   C  0  1  N  N  N  37.728  -44.574  74.925  -2.048   1.176   1.023  C2   H3D  11  
H3D  C1   C10  C  0  1  N  N  N  38.491  -44.833  73.657  -3.025   2.312   0.630  C1   H3D  12  
H3D  C    C11  C  0  1  N  N  N  38.109  -43.724  72.692  -2.455   2.800  -0.725  C    H3D  13  
H3D  C12  C12  C  0  1  Y  N  N  35.126  -44.857  73.609   0.067  -1.176  -0.881  C12  H3D  14  
H3D  C11  C13  C  0  1  Y  N  N  33.826  -45.192  73.230   1.391  -1.572  -0.906  C11  H3D  15  
H3D  O1   O2   O  0  1  N  N  N  31.493  -44.682  73.214   3.673  -1.151  -0.413  O1   H3D  16  
H3D  C14  C14  C  0  1  N  N  N  30.607  -42.751  74.536   4.246   0.725   0.978  C14  H3D  17  
H3D  O2   O3   O  0  1  N  N  N  31.994  -42.388  74.666   2.973   1.310   0.683  O2   H3D  18  
H3D  C9   C15  C  0  1  Y  N  N  33.039  -43.212  74.323   2.023   0.481   0.169  C9   H3D  19  
H3D  H1   H1   H  0  1  N  N  N  38.219  -41.911  73.842  -1.065   1.698  -1.979  H1   H3D  20  
H3D  H2   H2   H  0  1  N  N  N  36.678  -42.140  72.947  -2.759   1.144  -2.099  H2   H3D  21  
H3D  H3   H3   H  0  1  N  N  N  36.704  -41.916  79.146  -4.517  -2.556   0.815  H3   H3D  22  
H3D  H4   H4   H  0  1  N  N  N  37.740  -40.959  78.034  -3.801  -2.989  -0.756  H4   H3D  23  
H3D  H5   H5   H  0  1  N  N  N  35.952  -40.849  77.911  -3.161  -3.707   0.741  H5   H3D  24  
H3D  H6   H6   H  0  1  N  N  N  34.531  -41.972  75.282   0.420   1.831   0.609  H6   H3D  25  
H3D  H7   H7   H  0  1  N  N  N  29.497  -44.224  73.451   5.631  -0.605  -0.015  H7   H3D  26  
H3D  H8   H8   H  0  1  N  N  N  30.338  -44.839  74.914   4.740   0.482  -1.112  H8   H3D  27  
H3D  H9   H9   H  0  1  N  N  N  37.001  -41.404  75.596  -3.163  -0.750  -1.281  H9   H3D  28  
H3D  H10  H10  H  0  1  N  N  N  37.091  -45.441  75.156  -2.528   0.481   1.712  H10  H3D  29  
H3D  H11  H11  H  0  1  N  N  N  38.434  -44.407  75.752  -1.141   1.587   1.467  H11  H3D  30  
H3D  H12  H12  H  0  1  N  N  N  38.214  -45.812  73.240  -4.037   1.925   0.507  H12  H3D  31  
H3D  H13  H13  H  0  1  N  N  N  39.573  -44.811  73.853  -3.006   3.111   1.371  H13  H3D  32  
H3D  H14  H14  H  0  1  N  N  N  37.399  -44.100  71.940  -1.615   3.475  -0.564  H14  H3D  33  
H3D  H15  H15  H  0  1  N  N  N  39.004  -43.332  72.187  -3.232   3.290  -1.311  H15  H3D  34  
H3D  H16  H16  H  0  1  N  N  N  35.935  -45.510  73.315  -0.697  -1.821  -1.288  H16  H3D  35  
H3D  H17  H17  H  0  1  N  N  N  33.640  -46.096  72.669   1.660  -2.525  -1.337  H17  H3D  36  
H3D  H18  H18  H  0  1  N  N  N  30.127  -42.065  73.823   4.167   0.103   1.870  H18  H3D  37  
H3D  H19  H19  H  0  1  N  N  N  30.123  -42.656  75.519   4.983   1.511   1.142  H19  H3D  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H3D  C    C4   SING  N  N   1  
H3D  C    C1   SING  N  N   2  
H3D  O1   C10  SING  N  N   3  
H3D  O1   C13  SING  N  N   4  
H3D  C11  C10  DOUB  Y  N   5  
H3D  C11  C12  SING  Y  N   6  
H3D  C4   C3   SING  N  N   7  
H3D  C10  C9   SING  Y  N   8  
H3D  C12  C7   DOUB  Y  N   9  
H3D  C1   C2   SING  N  N  10  
H3D  C13  C14  SING  N  N  11  
H3D  C9   O2   SING  N  N  12  
H3D  C9   C8   DOUB  Y  N  13  
H3D  C7   C8   SING  Y  N  14  
H3D  C7   C3   SING  N  N  15  
H3D  C14  O2   SING  N  N  16  
H3D  C3   C2   SING  N  N  17  
H3D  C3   N    SING  N  N  18  
H3D  N    C5   SING  N  N  19  
H3D  C5   O    DOUB  N  N  20  
H3D  C5   C6   SING  N  N  21  
H3D  C4   H1   SING  N  N  22  
H3D  C4   H2   SING  N  N  23  
H3D  C6   H3   SING  N  N  24  
H3D  C6   H4   SING  N  N  25  
H3D  C6   H5   SING  N  N  26  
H3D  C8   H6   SING  N  N  27  
H3D  C13  H7   SING  N  N  28  
H3D  C13  H8   SING  N  N  29  
H3D  N    H9   SING  N  N  30  
H3D  C2   H10  SING  N  N  31  
H3D  C2   H11  SING  N  N  32  
H3D  C1   H12  SING  N  N  33  
H3D  C1   H13  SING  N  N  34  
H3D  C    H14  SING  N  N  35  
H3D  C    H15  SING  N  N  36  
H3D  C12  H16  SING  N  N  37  
H3D  C11  H17  SING  N  N  38  
H3D  C14  H18  SING  N  N  39  
H3D  C14  H19  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H3D  SMILES            ACDLabs               12.01  "C3C(c1cc2c(cc1)OCCO2)(NC(=O)C)CCC3"  
H3D  InChI             InChI                 1.03   "InChI=1S/C15H19NO3/c1-11(17)16-15(6-2-3-7-15)12-4-5-13-14(10-12)19-9-8-18-13/h4-5,10H,2-3,6-9H2,1H3,(H,16,17)"  
H3D  InChIKey          InChI                 1.03   RVYUUTVAMYXICP-UHFFFAOYSA-N  
H3D  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)NC1(CCCC1)c2ccc3OCCOc3c2"  
H3D  SMILES            CACTVS                3.385  "CC(=O)NC1(CCCC1)c2ccc3OCCOc3c2"  
H3D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1(CCCC1)c2ccc3c(c2)OCCO3"  
H3D  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1(CCCC1)c2ccc3c(c2)OCCO3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H3D  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[1-(2,3-dihydro-1,4-benzodioxin-6-yl)cyclopentyl]acetamide"  
H3D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[1-(2,3-dihydro-1,4-benzodioxin-6-yl)cyclopentyl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H3D  "Create component"  2018-06-11  RCSB  
H3D  "Initial release"   2019-03-27  RCSB  
##
