data_DNE
# 
_chem_comp.id                                    DNE 
_chem_comp.name                                  D-NORLEUCINE 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H13 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-11-14 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        131.173 
_chem_comp.one_letter_code                       L 
_chem_comp.three_letter_code                     DNE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DNE N   N    N 0 1 N N N Y Y N 31.000 15.157 8.815 -0.718 1.770  0.275  N    DNE 1  
DNE CA  CA   C 0 1 N N R Y N N 29.604 15.535 8.503 -0.754 0.317  0.487  CA   DNE 2  
DNE C   C    C 0 1 N N N Y N Y 29.194 16.876 9.135 -2.071 -0.230 -0.001 C    DNE 3  
DNE O   O    O 0 1 N N N Y N Y 28.071 17.330 8.925 -2.736 0.406  -0.785 O    DNE 4  
DNE CB  CB   C 0 1 N N N N N N 29.414 15.569 6.980 0.390  -0.340 -0.288 CB   DNE 5  
DNE CG  CG   C 0 1 N N N N N N 29.620 14.191 6.335 1.729  0.121  0.291  CG   DNE 6  
DNE CD  CD   C 0 1 N N N N N N 29.498 14.247 4.806 2.872  -0.536 -0.484 CD   DNE 7  
DNE CE  CE   C 0 1 N N N N N N 28.071 14.548 4.338 4.212  -0.076 0.094  CE   DNE 8  
DNE OXT OXT  O 0 1 N Y N Y N Y ?      ?      ?     -2.506 -1.422 0.436  OXT  DNE 9  
DNE H   H    H 0 1 N N N Y Y N 31.214 14.281 8.382 -0.819 1.995  -0.704 H    DNE 10 
DNE H2  H2   H 0 1 N Y N Y Y N 31.621 15.860 8.469 -1.424 2.234  0.827  H2   DNE 11 
DNE HA  HA   H 0 1 N N N Y N N 28.937 14.759 8.906 -0.643 0.103  1.550  HA   DNE 12 
DNE HB2 HB2  H 0 1 N N N N N N 28.393 15.914 6.759 0.311  -1.424 -0.203 HB2  DNE 13 
DNE HB3 HB3  H 0 1 N N N N N N 30.141 16.273 6.549 0.329  -0.053 -1.338 HB3  DNE 14 
DNE HG2 HG2  H 0 1 N N N N N N 30.622 13.822 6.598 1.808  1.205  0.206  HG2  DNE 15 
DNE HG3 HG3  H 0 1 N N N N N N 28.860 13.499 6.727 1.789  -0.166 1.340  HG3  DNE 16 
DNE HD2 HD2  H 0 1 N N N N N N 30.166 15.035 4.428 2.794  -1.620 -0.399 HD2  DNE 17 
DNE HD3 HD3  H 0 1 N N N N N N 29.807 13.276 4.392 2.812  -0.249 -1.534 HD3  DNE 18 
DNE HE1 HE1  H 0 1 N N N N N N 28.043 14.576 3.239 4.291  1.008  0.009  HE1  DNE 19 
DNE HE2 HE2  H 0 1 N N N N N N 27.393 13.762 4.702 4.272  -0.363 1.144  HE2  DNE 20 
DNE HE3 HE3  H 0 1 N N N N N N 27.752 15.522 4.738 5.027  -0.544 -0.458 HE3  DNE 21 
DNE HXT HOXT H 0 0 N Y N Y N Y ?      ?      ?     -3.356 -1.731 0.095  HOXT DNE 22 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DNE N   CA  SING N N 1  
DNE N   H   SING N N 2  
DNE N   H2  SING N N 3  
DNE CA  C   SING N N 4  
DNE CA  CB  SING N N 5  
DNE CA  HA  SING N N 6  
DNE C   O   DOUB N N 7  
DNE C   OXT SING N N 8  
DNE CB  CG  SING N N 9  
DNE CB  HB2 SING N N 10 
DNE CB  HB3 SING N N 11 
DNE CG  CD  SING N N 12 
DNE CG  HG2 SING N N 13 
DNE CG  HG3 SING N N 14 
DNE CD  CE  SING N N 15 
DNE CD  HD2 SING N N 16 
DNE CD  HD3 SING N N 17 
DNE CE  HE1 SING N N 18 
DNE CE  HE2 SING N N 19 
DNE CE  HE3 SING N N 20 
DNE OXT HXT SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DNE SMILES           ACDLabs              10.04   "O=C(O)C(N)CCCC"                                                         
DNE InChI            InChI                1.03    "InChI=1S/C6H13NO2/c1-2-3-4-5(7)6(8)9/h5H,2-4,7H2,1H3,(H,8,9)/t5-/m1/s1" 
DNE InChIKey         InChI                1.03    LRQKBLKVPFOOQJ-RXMQYKEDSA-N                                              
DNE SMILES_CANONICAL CACTVS               3.385   "CCCC[C@@H](N)C(O)=O"                                                    
DNE SMILES           CACTVS               3.385   "CCCC[CH](N)C(O)=O"                                                      
DNE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCC[C@H](C(=O)O)N"                                                     
DNE SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCCCC(C(=O)O)N"                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DNE "SYSTEMATIC NAME" ACDLabs              10.04   D-norleucine                    
DNE "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{R})-2-azanylhexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DNE "Create component"   2003-11-14 RCSB 
DNE "Modify descriptor"  2011-06-04 RCSB 
DNE "Other modification" 2022-01-10 PDBE 
DNE "Other modification" 2022-01-27 PDBE 
DNE "Modify backbone"    2023-11-03 PDBE 
# 
