data_O2E
#

_chem_comp.id                                   O2E
_chem_comp.name                                 "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C25 H32 N4 O9 S"
_chem_comp.mon_nstd_parent_comp_id              SER
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-21
_chem_comp.pdbx_modified_date                   2021-01-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       564.608
_chem_comp.one_letter_code                      S
_chem_comp.three_letter_code                    O2E
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XV5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O2E  C11  C1   C  0  1  N  N  S  17.945  -31.253  50.986  -1.605   0.003  -0.414  C11  O2E   1  
O2E  C18  C2   C  0  1  Y  N  N  24.378  -32.824  52.301   8.943   0.530  -0.337  C18  O2E   2  
O2E  C17  C3   C  0  1  Y  N  N  23.364  -33.708  51.956   7.615   0.440   0.084  C17  O2E   3  
O2E  C6   C4   C  0  1  N  N  R  15.220  -28.256  48.592  -5.559  -2.725  -0.652  C6   O2E   4  
O2E  O6   O1   O  0  1  N  N  N  16.669  -31.397  54.244  -2.112  -1.192   3.220  O6   O2E   5  
O2E  C5   C5   C  0  1  N  N  S  15.921  -28.586  49.921  -4.919  -1.412  -1.107  C5   O2E   6  
O2E  O5   O2   O  0  1  N  N  N  18.713  -30.831  53.848  -0.664   0.258   2.370  O5   O2E   7  
O2E  C16  C6   C  0  1  Y  N  N  23.542  -35.083  52.109   7.024  -0.804   0.237  C16  O2E   8  
O2E  O4   O3   O  0  1  N  N  N  13.814  -28.287  48.802  -5.168  -3.003   0.694  O4   O2E   9  
O2E  C2   C7   C  0  1  N  N  N  13.159  -27.620  52.180  -6.976   1.551   0.046  C2   O2E  10  
O2E  C15  C8   C  0  1  N  N  N  21.412  -35.800  51.039   4.808   0.057   0.319  C15  O2E  11  
O2E  C1   C9   C  0  1  N  N  N  15.285  -27.783  51.047  -5.480  -0.272  -0.297  C1   O2E  12  
O2E  C12  C10  C  0  1  N  N  S  19.035  -33.632  52.038   1.100  -0.354   0.371  C12  O2E  13  
O2E  C19  C11  C  0  1  N  N  N  24.177  -31.359  52.121   9.582   1.852  -0.496  C19  O2E  14  
O2E  C10  C12  C  0  1  N  N  N  17.569  -31.044  53.506  -1.583  -0.513   2.184  C10  O2E  15  
O2E  C21  C13  C  0  1  Y  N  N  25.745  -34.683  52.980   9.068  -1.868  -0.446  C21  O2E  16  
O2E  C22  C14  C  0  1  Y  N  N  24.740  -35.564  52.635   7.754  -1.957  -0.029  C22  O2E  17  
O2E  C20  C15  C  0  1  Y  N  N  25.570  -33.318  52.819   9.666  -0.634  -0.601  C20  O2E  18  
O2E  C7   C16  C  0  1  N  N  N  15.539  -29.195  47.445  -5.093  -3.862  -1.563  C7   O2E  19  
O2E  C8   C17  C  0  1  N  N  S  16.024  -30.080  50.226  -3.404  -1.485  -0.904  C8   O2E  20  
O2E  C9   C18  C  0  1  N  N  N  17.234  -30.851  52.063  -2.123  -0.707   0.817  C9   O2E  21  
O2E  C13  C19  C  0  1  N  N  N  20.064  -33.814  53.141   1.349   1.167   0.450  C13  O2E  22  
O2E  C14  C20  C  0  1  N  N  S  20.116  -35.827  51.845   3.414   0.033   0.892  C14  O2E  23  
O2E  O9   O4   O  0  1  N  N  N  21.421  -35.609  49.835   5.133   0.939  -0.449  O9   O2E  24  
O2E  O7   O5   O  0  1  N  N  N  25.246  -30.703  51.742   8.950   2.864  -0.265  O7   O2E  25  
O2E  O1   O6   O  0  1  N  N  N  15.719  -26.714  51.371  -5.026  -0.025   0.795  O1   O2E  26  
O2E  O2   O7   O  0  1  N  N  N  14.272  -28.401  51.658  -6.485   0.470  -0.789  O2   O2E  27  
O2E  CA   C21  C  0  1  N  N  R  13.679  -26.558  53.138  -8.113   2.278  -0.677  CA   O2E  28  
O2E  C    C22  C  0  1  N  N  N  12.780  -26.346  54.359  -8.540   3.474   0.134  C    O2E  29  
O2E  O    O8   O  0  1  N  N  N  11.686  -26.906  54.478  -9.676   3.558   0.535  O    O2E  30  
O2E  N    N1   N  0  1  N  N  N  14.120  -25.361  52.439  -9.252   1.365  -0.840  N    O2E  31  
O2E  N2   N2   N  0  1  N  N  N  16.095  -30.324  51.663  -3.082  -1.493   0.528  N2   O2E  32  
O2E  S1   S1   S  0  1  N  N  N  19.414  -32.197  50.984  -0.051  -0.746  -0.975  S1   O2E  33  
O2E  N3   N3   N  0  1  N  N  N  20.298  -35.258  53.181   2.778   1.360   0.755  N3   O2E  34  
O2E  N4   N4   N  0  1  N  N  N  22.526  -36.011  51.774   5.694  -0.900   0.660  N4   O2E  35  
O2E  O8   O9   O  0  1  N  N  N  23.093  -30.825  52.315  10.865   1.936  -0.897  O8   O2E  36  
O2E  C23  C23  C  0  1  N  N  N  19.033  -34.929  51.230   2.512  -0.924   0.073  C23  O2E  37  
O2E  C24  C24  C  0  1  N  N  R  17.276  -30.823  49.716  -2.725  -0.212  -1.461  C24  O2E  38  
O2E  C25  C25  C  0  1  N  N  N  18.255  -30.048  48.852  -3.697   0.970  -1.480  C25  O2E  39  
O2E  H1   H1   H  0  1  N  N  N  18.530  -30.322  51.008  -1.467   1.065  -0.214  H1   O2E  40  
O2E  H2   H2   H  0  1  N  N  N  22.431  -33.328  51.566   7.050   1.337   0.291  H2   O2E  41  
O2E  H3   H3   H  0  1  N  N  N  15.521  -27.240  48.296  -6.644  -2.638  -0.704  H3   O2E  42  
O2E  H4   H4   H  0  1  N  N  N  17.000  -31.480  55.131  -1.727  -1.032   4.092  H4   O2E  43  
O2E  H5   H5   H  0  1  N  N  N  16.953  -28.219  49.823  -5.136  -1.249  -2.163  H5   O2E  44  
O2E  H6   H6   H  0  1  N  N  N  13.587  -27.705  49.518  -4.228  -3.209   0.797  H6   O2E  45  
O2E  H7   H7   H  0  1  N  N  N  12.632  -27.133  51.346  -7.346   1.145   0.987  H7   O2E  46  
O2E  H8   H8   H  0  1  N  N  N  12.465  -28.285  52.714  -6.166   2.252   0.246  H8   O2E  47  
O2E  H9   H9   H  0  1  N  N  N  18.040  -33.454  52.471   0.724  -0.733   1.321  H9   O2E  48  
O2E  H10  H10  H  0  1  N  N  N  26.675  -35.061  53.379   9.630  -2.768  -0.650  H10  O2E  49  
O2E  H11  H11  H  0  1  N  N  N  24.882  -36.626  52.773   7.292  -2.926   0.091  H11  O2E  50  
O2E  H12  H12  H  0  1  N  N  N  26.361  -32.637  53.096  10.694  -0.569  -0.927  H12  O2E  51  
O2E  H13  H13  H  0  1  N  N  N  16.623  -29.192  47.259  -5.549  -4.798  -1.239  H13  O2E  52  
O2E  H14  H14  H  0  1  N  N  N  15.214  -30.214  47.704  -5.391  -3.650  -2.590  H14  O2E  53  
O2E  H15  H15  H  0  1  N  N  N  15.011  -28.861  46.540  -4.008  -3.949  -1.511  H15  O2E  54  
O2E  H16  H16  H  0  1  N  N  N  15.135  -30.581  49.815  -3.000  -2.374  -1.387  H16  O2E  55  
O2E  H17  H17  H  0  1  N  N  N  20.992  -33.275  52.901   1.108   1.632  -0.506  H17  O2E  56  
O2E  H18  H18  H  0  1  N  N  N  19.671  -33.456  54.104   0.738   1.602   1.241  H18  O2E  57  
O2E  H19  H19  H  0  1  N  N  N  19.743  -36.860  51.912   3.440  -0.270   1.939  H19  O2E  58  
O2E  H20  H20  H  0  1  N  N  N  14.598  -26.997  53.554  -7.768   2.608  -1.656  H20  O2E  59  
O2E  H21  H21  H  0  1  N  N  N  13.114  -25.683  55.144  -7.829   4.257   0.357  H21  O2E  60  
O2E  H22  H22  H  0  1  N  N  N  14.453  -24.691  53.102  -9.009   0.587  -1.434  H22  O2E  61  
O2E  H23  H23  H  0  1  N  N  N  14.857  -25.597  51.806  -9.590   1.045   0.055  H23  O2E  62  
O2E  H25  H25  H  0  1  N  N  N  19.650  -35.682  53.814   2.898   1.906   1.595  H25  O2E  63  
O2E  H27  H27  H  0  1  N  N  N  22.648  -36.939  52.126   5.409  -1.655   1.197  H27  O2E  64  
O2E  H28  H28  H  0  1  N  N  N  23.165  -29.892  52.149  11.240   2.823  -0.987  H28  O2E  65  
O2E  H29  H29  H  0  1  N  N  N  19.266  -34.720  50.175   2.602  -1.949   0.433  H29  O2E  66  
O2E  H30  H30  H  0  1  N  N  N  18.050  -35.418  51.298   2.742  -0.863  -0.990  H30  O2E  67  
O2E  H31  H31  H  0  1  N  N  N  16.949  -31.716  49.164  -2.308  -0.391  -2.452  H31  O2E  68  
O2E  H32  H32  H  0  1  N  N  N  19.091  -30.703  48.566  -4.012   1.197  -0.461  H32  O2E  69  
O2E  H33  H33  H  0  1  N  N  N  17.742  -29.692  47.946  -3.203   1.840  -1.910  H33  O2E  70  
O2E  H34  H34  H  0  1  N  N  N  18.641  -29.187  49.417  -4.570   0.713  -2.081  H34  O2E  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O2E  C7   C6   SING  N  N   1  
O2E  C6   O4   SING  N  N   2  
O2E  C6   C5   SING  N  N   3  
O2E  C25  C24  SING  N  N   4  
O2E  C24  C8   SING  N  N   5  
O2E  C24  C11  SING  N  N   6  
O2E  O9   C15  DOUB  N  N   7  
O2E  C5   C8   SING  N  N   8  
O2E  C5   C1   SING  N  N   9  
O2E  C8   N2   SING  N  N  10  
O2E  S1   C11  SING  N  N  11  
O2E  S1   C12  SING  N  N  12  
O2E  C11  C9   SING  N  N  13  
O2E  C15  N4   SING  N  N  14  
O2E  C15  C14  SING  N  N  15  
O2E  C1   O1   DOUB  N  N  16  
O2E  C1   O2   SING  N  N  17  
O2E  C23  C14  SING  N  N  18  
O2E  C23  C12  SING  N  N  19  
O2E  O2   C2   SING  N  N  20  
O2E  N2   C9   DOUB  N  N  21  
O2E  O7   C19  DOUB  N  N  22  
O2E  N4   C16  SING  N  N  23  
O2E  C14  N3   SING  N  N  24  
O2E  C17  C16  DOUB  Y  N  25  
O2E  C17  C18  SING  Y  N  26  
O2E  C12  C13  SING  N  N  27  
O2E  C9   C10  SING  N  N  28  
O2E  C16  C22  SING  Y  N  29  
O2E  C19  C18  SING  N  N  30  
O2E  C19  O8   SING  N  N  31  
O2E  C2   CA   SING  N  N  32  
O2E  C18  C20  DOUB  Y  N  33  
O2E  N    CA   SING  N  N  34  
O2E  C22  C21  DOUB  Y  N  35  
O2E  C20  C21  SING  Y  N  36  
O2E  CA   C    SING  N  N  37  
O2E  C13  N3   SING  N  N  38  
O2E  C10  O5   DOUB  N  N  39  
O2E  C10  O6   SING  N  N  40  
O2E  C    O    DOUB  N  N  41  
O2E  C11  H1   SING  N  N  42  
O2E  C17  H2   SING  N  N  43  
O2E  C6   H3   SING  N  N  44  
O2E  O6   H4   SING  N  N  45  
O2E  C5   H5   SING  N  N  46  
O2E  O4   H6   SING  N  N  47  
O2E  C2   H7   SING  N  N  48  
O2E  C2   H8   SING  N  N  49  
O2E  C12  H9   SING  N  N  50  
O2E  C21  H10  SING  N  N  51  
O2E  C22  H11  SING  N  N  52  
O2E  C20  H12  SING  N  N  53  
O2E  C7   H13  SING  N  N  54  
O2E  C7   H14  SING  N  N  55  
O2E  C7   H15  SING  N  N  56  
O2E  C8   H16  SING  N  N  57  
O2E  C13  H17  SING  N  N  58  
O2E  C13  H18  SING  N  N  59  
O2E  C14  H19  SING  N  N  60  
O2E  CA   H20  SING  N  N  61  
O2E  C    H21  SING  N  N  62  
O2E  N    H22  SING  N  N  63  
O2E  N    H23  SING  N  N  64  
O2E  N3   H25  SING  N  N  65  
O2E  N4   H27  SING  N  N  66  
O2E  O8   H28  SING  N  N  67  
O2E  C23  H29  SING  N  N  68  
O2E  C23  H30  SING  N  N  69  
O2E  C24  H31  SING  N  N  70  
O2E  C25  H32  SING  N  N  71  
O2E  C25  H33  SING  N  N  72  
O2E  C25  H34  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O2E  InChI             InChI                 1.03   "InChI=1S/C25H32N4O9S/c1-11-19(18(12(2)31)25(37)38-10-14(26)9-30)29-20(24(35)36)21(11)39-16-7-17(27-8-16)22(32)28-15-5-3-4-13(6-15)23(33)34/h3-6,9,11-12,14,16-19,21,27,31H,7-8,10,26H2,1-2H3,(H,28,32)(H,33,34)(H,35,36)/t11-,12-,14+,16+,17+,18-,19-,21+/m1/s1"  
O2E  InChIKey          InChI                 1.03   PARUKYQAUVQKHU-OKSCULGPSA-N  
O2E  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O)[C@H]([C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O)C(=O)OC[C@@H](N)C=O"  
O2E  SMILES            CACTVS                3.385  "C[CH](O)[CH]([CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O)C(=O)OC[CH](N)C=O"  
O2E  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1[C@@H](N=C(C1S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O)C(=O)O)[C@@H]([C@@H](C)O)C(=O)OC[C@H](C=O)N"  
O2E  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(=NC1C(C(C)O)C(=O)OCC(C=O)N)C(=O)O)SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          O2E
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R})-2-[(2~{S},3~{R})-1-[(2~{R})-2-azanyl-3-oxidanylidene-propoxy]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O2E  "Create component"          2020-01-21  PDBE  
O2E  "Modify component comp_id"  2020-01-22  PDBE  
O2E  "Initial release"           2021-02-03  RCSB  
##
