data_VEE
#

_chem_comp.id                                   VEE
_chem_comp.name                                 "(1R,2S,3R,4S,5R,6R)-5-(8-azidooctylamino)-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H30 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-alkyl mannocyclophellitol aziridine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-11
_chem_comp.pdbx_modified_date                   2022-01-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       330.423
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VEE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ODJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VEE  C1   C1   C   0  1  N  N  N  28.659  13.376   5.756    4.619  -1.418   1.316  C1   VEE   1  
VEE  C2   C2   C   0  1  N  N  R  27.541  14.105   6.526    5.063  -1.640  -0.131  C2   VEE   2  
VEE  C3   C3   C   0  1  N  N  R  27.065  13.308   7.731    5.610  -0.330  -0.703  C3   VEE   3  
VEE  C4   C4   C   0  1  N  N  R  28.194  13.095   8.759    4.517   0.739  -0.664  C4   VEE   4  
VEE  C5   C5   C   0  1  N  N  R  29.575  13.231   8.132    4.072   0.961   0.783  C5   VEE   5  
VEE  C6   C6   C   0  1  N  N  S  29.591  12.584   6.682    3.525  -0.348   1.355  C6   VEE   6  
VEE  C8   C7   C   0  1  N  N  N  30.717  12.836   9.060    2.979   2.031   0.822  C8   VEE   7  
VEE  C14  C8   C   0  1  N  N  N  30.510  10.280   6.569    1.111  -0.395   1.182  C14  VEE   8  
VEE  C15  C9   C   0  1  N  N  N  30.215   8.849   6.244   -0.053  -0.751   0.255  C15  VEE   9  
VEE  C16  C10  C   0  1  N  N  N  31.441   7.922   6.392   -1.372  -0.339   0.910  C16  VEE  10  
VEE  C17  C11  C   0  1  N  N  N  31.173   6.468   6.039   -2.536  -0.695  -0.018  C17  VEE  11  
VEE  C18  C12  C   0  1  N  N  N  31.804   5.454   6.892   -3.855  -0.282   0.638  C18  VEE  12  
VEE  C19  C13  C   0  1  N  N  N  31.341   4.035   6.616   -5.019  -0.638  -0.290  C19  VEE  13  
VEE  C20  C14  C   0  1  N  N  N  30.425   3.398   7.658   -6.338  -0.225   0.365  C20  VEE  14  
VEE  C21  C15  C   0  1  N  N  N  30.869   1.995   8.084   -7.502  -0.581  -0.562  C21  VEE  15  
VEE  N7   N1   N   0  1  N  N  N  29.280  11.119   6.630    2.377  -0.792   0.553  N7   VEE  16  
VEE  O9   O1   O   0  1  N  N  N  30.641  11.518   9.508    3.527   3.288   0.421  O9   VEE  17  
VEE  O11  O2   O   0  1  N  N  N  28.071  14.105   9.750    5.028   1.962  -1.198  O11  VEE  18  
VEE  O12  O3   O   0  1  N  N  N  26.562  12.087   7.231    6.026  -0.538  -2.054  O12  VEE  19  
VEE  O13  O4   O   0  1  N  N  N  26.409  14.328   5.679    3.947  -2.071  -0.911  O13  VEE  20  
VEE  H1   H1   H   0  1  N  N  N  28.198  12.680   5.040    4.229  -2.351   1.724  H1   VEE  21  
VEE  H2   H2   H   0  1  N  N  N  27.937  15.069   6.879    5.842  -2.402  -0.159  H2   VEE  22  
VEE  H3   H3   H   0  1  N  N  N  26.258  13.871   8.222    6.462  -0.001  -0.107  H3   VEE  23  
VEE  H4   H4   H   0  1  N  N  N  28.092  12.095   9.205    3.665   0.410  -1.259  H4   VEE  24  
VEE  H5   H5   H   0  1  N  N  N  29.707  14.309   7.955    4.924   1.290   1.379  H5   VEE  25  
VEE  H6   H6   H   0  1  N  N  N  30.613  12.716   6.296    3.208  -0.190   2.386  H6   VEE  26  
VEE  H24  H7   H   0  1  N  N  N  31.666  12.965   8.519    2.174   1.752   0.143  H24  VEE  27  
VEE  H29  H8   H   0  1  N  N  N  30.701  13.502   9.935    2.586   2.112   1.836  H29  VEE  28  
VEE  H7   H9   H   0  1  N  N  N  31.014  10.323   7.546    1.115   0.679   1.363  H7   VEE  29  
VEE  H8   H10  H   0  1  N  N  N  31.176  10.687   5.794    0.995  -0.923   2.129  H8   VEE  30  
VEE  H10  H11  H   0  1  N  N  N  29.859   8.794   5.205    0.063  -0.224  -0.692  H10  VEE  31  
VEE  H9   H12  H   0  1  N  N  N  29.425   8.493   6.922   -0.058  -1.826   0.074  H9   VEE  32  
VEE  H11  H13  H   0  1  N  N  N  31.781   7.966   7.437   -1.488  -0.866   1.857  H11  VEE  33  
VEE  H12  H14  H   0  1  N  N  N  32.237   8.296   5.731   -1.368   0.736   1.091  H12  VEE  34  
VEE  H13  H15  H   0  1  N  N  N  30.085   6.310   6.083   -2.420  -0.167  -0.965  H13  VEE  35  
VEE  H14  H16  H   0  1  N  N  N  31.526   6.304   5.010   -2.541  -1.769  -0.199  H14  VEE  36  
VEE  H16  H17  H   0  1  N  N  N  32.892   5.499   6.735   -3.971  -0.809   1.585  H16  VEE  37  
VEE  H15  H18  H   0  1  N  N  N  31.575   5.694   7.941   -3.851   0.793   0.819  H15  VEE  38  
VEE  H18  H19  H   0  1  N  N  N  30.802   4.041   5.657   -4.903  -0.111  -1.237  H18  VEE  39  
VEE  H17  H20  H   0  1  N  N  N  32.237   3.403   6.529   -5.023  -1.713  -0.471  H17  VEE  40  
VEE  H20  H21  H   0  1  N  N  N  30.408   4.044   8.548   -6.454  -0.752   1.312  H20  VEE  41  
VEE  H19  H22  H   0  1  N  N  N  29.412   3.330   7.236   -6.334   0.850   0.546  H19  VEE  42  
VEE  H23  H26  H   0  1  N  N  N  28.726  10.937   5.818    2.408  -1.788   0.398  H23  VEE  43  
VEE  H25  H28  H   0  1  N  N  N  31.377  11.334  10.079    2.889   4.014   0.423  H25  VEE  44  
VEE  H26  H29  H   0  1  N  N  N  28.757  13.998  10.399    5.329   1.896  -2.114  H26  VEE  45  
VEE  H27  H30  H   0  1  N  N  N  26.251  11.553   7.953    6.719  -1.204  -2.155  H27  VEE  46  
VEE  H28  H31  H   0  1  N  N  N  25.730  14.778   6.169    4.156  -2.231  -1.842  H28  VEE  47  
VEE  N1   N2   N   0  1  N  Y  N       ?       ?       ?   -8.765  -0.186   0.065  N1   VEE  48  
VEE  N2   N3   N   1  1  N  N  N       ?       ?       ?   -9.437   0.558  -0.443  N2   VEE  49  
VEE  N3   N4   N  -1  1  N  N  N       ?       ?       ?  -10.109   1.302  -0.952  N3   VEE  50  
VEE  H21  H33  H   0  1  N  N  N  31.599   1.475   7.446   -7.386  -0.054  -1.509  H21  VEE  51  
VEE  H22  H34  H   0  1  N  N  N  31.131   1.841   9.141   -7.506  -1.656  -0.743  H22  VEE  52  
VEE  H31  H32  H   0  1  N  N  N  29.255  14.122   5.210    5.470  -1.089   1.912  H31  VEE  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VEE  O13  C2   SING  N  N   1  
VEE  C1   C2   SING  N  N   2  
VEE  C1   C6   SING  N  N   3  
VEE  C17  C16  SING  N  N   4  
VEE  C17  C18  SING  N  N   5  
VEE  C15  C16  SING  N  N   6  
VEE  C15  C14  SING  N  N   7  
VEE  C2   C3   SING  N  N   8  
VEE  C14  N7   SING  N  N   9  
VEE  C19  C18  SING  N  N  10  
VEE  C19  C20  SING  N  N  11  
VEE  N7   C6   SING  N  N  12  
VEE  C6   C5   SING  N  N  13  
VEE  O12  C3   SING  N  N  14  
VEE  C20  C21  SING  N  N  15  
VEE  C3   C4   SING  N  N  16  
VEE  C5   C4   SING  N  N  17  
VEE  C5   C8   SING  N  N  18  
VEE  C4   O11  SING  N  N  19  
VEE  C8   O9   SING  N  N  20  
VEE  C1   H1   SING  N  N  21  
VEE  C2   H2   SING  N  N  22  
VEE  C3   H3   SING  N  N  23  
VEE  C4   H4   SING  N  N  24  
VEE  C5   H5   SING  N  N  25  
VEE  C6   H6   SING  N  N  26  
VEE  C8   H24  SING  N  N  27  
VEE  C8   H29  SING  N  N  28  
VEE  C14  H7   SING  N  N  29  
VEE  C14  H8   SING  N  N  30  
VEE  C15  H10  SING  N  N  31  
VEE  C15  H9   SING  N  N  32  
VEE  C16  H11  SING  N  N  33  
VEE  C16  H12  SING  N  N  34  
VEE  C17  H13  SING  N  N  35  
VEE  C17  H14  SING  N  N  36  
VEE  C18  H16  SING  N  N  37  
VEE  C18  H15  SING  N  N  38  
VEE  C19  H18  SING  N  N  39  
VEE  C19  H17  SING  N  N  40  
VEE  C20  H20  SING  N  N  41  
VEE  C20  H19  SING  N  N  42  
VEE  N7   H23  SING  N  N  43  
VEE  O9   H25  SING  N  N  44  
VEE  O11  H26  SING  N  N  45  
VEE  O12  H27  SING  N  N  46  
VEE  O13  H28  SING  N  N  47  
VEE  C21  N1   SING  N  N  48  
VEE  N1   N2   DOUB  N  N  49  
VEE  N2   N3   DOUB  N  N  50  
VEE  C21  H21  SING  N  N  51  
VEE  C21  H22  SING  N  N  52  
VEE  C1   H31  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VEE  InChI             InChI                 1.03   "InChI=1S/C15H30N4O4/c16-19-18-8-6-4-2-1-3-5-7-17-12-9-13(21)15(23)14(22)11(12)10-20/h11-15,17,20-23H,1-10H2/t11-,12-,13+,14+,15+/m0/s1"  
VEE  InChIKey          InChI                 1.03   GOBIPKNKUJPACR-VQJWOFKYSA-N  
VEE  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)C[C@@H]1NCCCCCCCCN=[N+]=[N-]"  
VEE  SMILES            CACTVS                3.385  "OC[CH]1[CH](O)[CH](O)[CH](O)C[CH]1NCCCCCCCCN=[N+]=[N-]"  
VEE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1[C@@H]([C@@H]([C@H]([C@@H]([C@@H]1O)O)O)CO)NCCCCCCCCN=[N+]=[N-]"  
VEE  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C(C(C(C(C1O)O)O)CO)NCCCCCCCCN=[N+]=[N-]"  
#
_pdbx_chem_comp_identifier.comp_id          VEE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{R},2~{R},3~{R},4~{R},5~{S})-5-(8-azidooctylamino)-4-(hydroxymethyl)cyclohexane-1,2,3-triol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VEE
_pdbx_chem_comp_synonyms.name        "N-alkyl mannocyclophellitol aziridine"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VEE  "Create component"    2021-05-11  PDBE  
VEE  "Other modification"  2021-07-21  PDBE  
VEE  "Initial release"     2022-02-02  RCSB  
##
