data_XRE
# 
_chem_comp.id                                    XRE 
_chem_comp.name                                  5-hydroxyproline 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H9 N O3" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         "(2~{S},5~{S})-5-oxidanylpyrrolidine-2-carboxylic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-08 
_chem_comp.pdbx_modified_date                    2024-09-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        131.130 
_chem_comp.one_letter_code                       P 
_chem_comp.three_letter_code                     XRE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R38 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XRE CB  C1  C 0 1 N N N 3.079 -21.382 -0.835 0.021  1.514  -0.153 CB  XRE 1  N N N 
XRE CG  C2  C 0 1 N N N 2.176 -21.484 0.380  1.448  1.153  -0.626 CG  XRE 2  N N N 
XRE CD  C3  C 0 1 N N S 3.109 -21.148 1.470  1.867  0.034  0.361  CD  XRE 3  N N N 
XRE N   N1  N 0 1 N N N 4.010 -20.161 0.920  0.609  -0.731 0.561  N   XRE 4  Y Y N 
XRE CA  C4  C 0 1 N N S 3.774 -20.066 -0.540 -0.471 0.278  0.623  CA  XRE 5  N Y N 
XRE C   C5  C 0 1 N N N 2.954 -18.792 -0.746 -1.720 -0.268 -0.019 C   XRE 6  N Y Y 
XRE O   O1  O 0 1 N N N 2.613 -17.986 0.170  -1.654 -1.225 -0.753 O   XRE 7  N Y Y 
XRE OD  O2  O 0 1 N N N 2.312 -20.651 2.520  2.875  -0.797 -0.218 OD  XRE 8  N N N 
XRE OXT O3  O 0 1 N Y N 2.662 -18.596 -2.064 -2.907 0.309  0.226  O1  XRE 9  N Y Y 
XRE HB2 H1  H 0 1 N N N 2.501 -21.337 -1.770 0.048  2.385  0.501  H1  XRE 10 N N N 
XRE HB3 H2  H 0 1 N N N 3.792 -22.218 -0.884 -0.625 1.704  -1.011 H2  XRE 11 N N N 
XRE HG2 H3  H 0 1 N N N 1.346 -20.764 0.325  1.432  0.779  -1.650 H3  XRE 12 N N N 
XRE HG3 H4  H 0 1 N N N 1.772 -22.501 0.496  2.112  2.013  -0.539 H4  XRE 13 N N N 
XRE HD2 H5  H 0 1 N N N 3.663 -22.045 1.784  2.214  0.461  1.301  H5  XRE 14 N N N 
XRE H   H6  H 0 1 N Y N 4.956 -20.436 1.091  0.647  -1.272 1.412  H6  XRE 15 N Y N 
XRE HA  H8  H 0 1 N N N 4.725 -20.001 -1.089 -0.669 0.546  1.660  H8  XRE 16 N Y N 
XRE H9  H9  H 0 1 N N N 2.866 -20.417 3.255  3.173  -1.513 0.359  H9  XRE 17 N N N 
XRE HXT H10 H 0 1 N Y N 2.180 -17.784 -2.165 -3.681 -0.076 -0.209 H10 XRE 18 N Y Y 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XRE CB  CA  SING N N 1  
XRE CB  CG  SING N N 2  
XRE C   CA  SING N N 3  
XRE C   O   DOUB N N 4  
XRE CA  N   SING N N 5  
XRE CG  CD  SING N N 6  
XRE N   CD  SING N N 7  
XRE CD  OD  SING N N 8  
XRE C   OXT SING N N 9  
XRE CB  HB2 SING N N 10 
XRE CB  HB3 SING N N 11 
XRE CG  HG2 SING N N 12 
XRE CG  HG3 SING N N 13 
XRE CD  HD2 SING N N 14 
XRE N   H   SING N N 15 
XRE CA  HA  SING N N 16 
XRE OD  H9  SING N N 17 
XRE OXT HXT SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XRE InChI            InChI                1.06  "InChI=1S/C5H9NO3/c7-4-2-1-3(6-4)5(8)9/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4-/m0/s1" 
XRE InChIKey         InChI                1.06  KYBXNPIASYUWLN-IMJSIDKUSA-N                                                  
XRE SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CC[C@H](N1)C(O)=O"                                                   
XRE SMILES           CACTVS               3.385 "O[CH]1CC[CH](N1)C(O)=O"                                                     
XRE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C[C@@H](N[C@@H]1C(=O)O)O"                                                 
XRE SMILES           "OpenEye OEToolkits" 2.0.7 "C1CC(NC1C(=O)O)O"                                                           
# 
_pdbx_chem_comp_identifier.comp_id           XRE 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},5~{S})-5-oxidanylpyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XRE "Create component"     2023-11-08 PDBE 
XRE "Modify name"          2023-11-09 PDBE 
XRE "Modify internal type" 2023-11-09 PDBE 
XRE "Initial release"      2024-09-25 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XRE 
_pdbx_chem_comp_synonyms.name         "(2~{S},5~{S})-5-oxidanylpyrrolidine-2-carboxylic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
