data_V4F
# 
_chem_comp.id                                    V4F 
_chem_comp.name                                  "8-(aminomethyl)-4-(phosphonomethoxy)quinoline-2-carboxylic acid" 
_chem_comp.type                                  "peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H13 N2 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               V4F 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-21 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        312.215 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V4F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CMN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V4F C    C    C 0 1 N N N Y N Y -7.793  -19.286 20.362 0.544  2.982  -0.344 C    V4F 1  
V4F CAF  CAF  C 0 1 Y N N N N N -10.313 -21.748 19.280 -0.356 -0.638 -0.780 CAF  V4F 2  
V4F CAD  CAD  C 0 1 Y N N N N N -9.387  -21.112 20.101 -0.462 0.739  -0.718 CAD  V4F 3  
V4F CAE  CA   C 0 1 Y N N Y N N -8.806  -19.926 19.645 0.667  1.506  -0.408 CA   V4F 4  
V4F CAL  CAL  C 0 1 Y N N N N N -10.681 -21.170 18.079 0.905  -1.220 -0.518 CAL  V4F 5  
V4F CAM  CAM  C 0 1 Y N N Y N N -10.060 -20.007 17.659 2.003  -0.376 -0.211 CAM  V4F 6  
V4F CAJ  CAJ  C 0 1 Y N N Y N N -10.410 -19.452 16.432 3.258  -0.958 0.049  CAJ  V4F 7  
V4F CAK  CAK  C 0 1 Y N N N N N -11.375 -20.077 15.649 3.399  -2.310 0.002  CAK  V4F 8  
V4F CAG  CAG  C 0 1 Y N N N N N -11.994 -21.244 16.069 2.317  -3.135 -0.299 CAG  V4F 9  
V4F CAI  CAI  C 0 1 Y N N N N N -11.642 -21.790 17.293 1.087  -2.609 -0.557 CAI  V4F 10 
V4F C01  C01  C 0 1 N N N N N N -10.862 -23.471 20.871 -2.691 -0.744 -1.201 C01  V4F 11 
V4F CA   CAE  C 0 1 N N N Y N N -9.819  -18.274 15.973 4.442  -0.085 0.377  CAE  V4F 12 
V4F NAH  NAH  N 0 1 Y N N Y N N -9.105  -19.457 18.421 1.839  0.947  -0.172 NAH  V4F 13 
V4F N    N    N 0 1 N N N Y Y N -9.508  -17.408 17.116 4.378  0.317  1.789  N    V4F 14 
V4F O    O    O 0 1 N N N Y N Y -7.595  -19.563 21.544 -0.527 3.511  -0.559 O    V4F 15 
V4F O01  O01  O 0 1 N N N N N N -11.032 -22.865 19.587 -1.432 -1.408 -1.078 O01  V4F 16 
V4F O3   O3   O 0 1 N N N N N N -10.447 -25.929 21.401 -4.814 0.272  0.326  O3   V4F 17 
V4F O2   O2   O 0 1 N N N N N N -12.771 -24.999 21.614 -3.393 -1.690 1.346  O2   V4F 18 
V4F O1   O1   O 0 1 N N N N N N -11.711 -25.348 19.393 -2.443 0.637  1.111  O1   V4F 19 
V4F P    P    P 0 1 N N N N N N -11.537 -25.109 20.828 -3.335 -0.348 0.458  P    V4F 20 
V4F HAD  HAD  H 0 1 N N N N N N -9.125  -21.524 21.064 -1.410 1.220  -0.908 HAD  V4F 21 
V4F HAK  HAK  H 0 1 N N N N N N -11.647 -19.645 14.697 4.364  -2.751 0.203  HAK  V4F 22 
V4F HAG  HAG  H 0 1 N N N N N N -12.740 -21.721 15.451 2.456  -4.206 -0.330 HAG  V4F 23 
V4F HAI  HAI  H 0 1 N N N N N N -12.116 -22.698 17.635 0.257  -3.259 -0.790 HAI  V4F 24 
V4F H3   H3   H 0 1 N N N N N N -9.791  -23.520 21.117 -2.562 0.177  -1.770 H3   V4F 25 
V4F HA1  H4   H 0 1 N N N Y N N -8.892  -18.515 15.432 5.363  -0.640 0.199  H4   V4F 26 
V4F HA2  H5   H 0 1 N N N Y N N -10.514 -17.754 15.297 4.425  0.803  -0.254 H5   V4F 27 
V4F H    H    H 0 1 N N N Y Y N -9.084  -16.563 16.789 5.162  0.903  2.034  H    V4F 28 
V4F H2   H2   H 0 1 N Y N Y Y N -10.351 -17.190 17.608 3.504  0.777  1.994  H2   V4F 29 
V4F HPO3 HPO3 H 0 0 N N N N N N -10.060 -26.464 20.718 -5.219 0.507  1.172  HPO3 V4F 30 
V4F HPO2 HPO2 H 0 0 N N N N N N -13.522 -25.105 21.042 -4.018 -2.351 1.018  HPO2 V4F 31 
V4F OXT  OXT  O 0 1 N Y N Y N Y -7.056  -18.440 19.606 1.619  3.734  -0.042 O4   V4F 32 
V4F H1   H1   H 0 1 N N N N N N -11.387 -22.875 21.633 -3.396 -1.395 -1.718 H1   V4F 33 
V4F HXT  HXT  H 0 1 N Y N Y N Y -6.348  -18.082 20.129 1.489  4.692  -0.008 H6   V4F 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V4F CAK CAG  DOUB Y N 1  
V4F CAK CAJ  SING Y N 2  
V4F CA  CAJ  SING N N 3  
V4F CA  N    SING N N 4  
V4F CAG CAI  SING Y N 5  
V4F CAJ CAM  DOUB Y N 6  
V4F CAI CAL  DOUB Y N 7  
V4F CAM CAL  SING Y N 8  
V4F CAM NAH  SING Y N 9  
V4F CAL CAF  SING Y N 10 
V4F NAH CAE  DOUB Y N 11 
V4F CAF O01  SING N N 12 
V4F CAF CAD  DOUB Y N 13 
V4F O1  P    DOUB N N 14 
V4F O01 C01  SING N N 15 
V4F CAE CAD  SING Y N 16 
V4F CAE C    SING N N 17 
V4F C   O    DOUB N N 18 
V4F P   C01  SING N N 19 
V4F P   O3   SING N N 20 
V4F P   O2   SING N N 21 
V4F CAD HAD  SING N N 22 
V4F CAK HAK  SING N N 23 
V4F CAG HAG  SING N N 24 
V4F CAI HAI  SING N N 25 
V4F C01 H3   SING N N 26 
V4F CA  HA1  SING N N 27 
V4F CA  HA2  SING N N 28 
V4F N   H    SING N N 29 
V4F N   H2   SING N N 30 
V4F O3  HPO3 SING N N 31 
V4F O2  HPO2 SING N N 32 
V4F C   OXT  SING N N 33 
V4F C01 H1   SING N N 34 
V4F OXT HXT  SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V4F InChI            InChI                1.06  "InChI=1S/C12H13N2O6P/c13-5-7-2-1-3-8-10(20-6-21(17,18)19)4-9(12(15)16)14-11(7)8/h1-4H,5-6,13H2,(H,15,16)(H2,17,18,19)" 
V4F InChIKey         InChI                1.06  OQLWCJHMUOMQIW-UHFFFAOYSA-N                                                                                             
V4F SMILES_CANONICAL CACTVS               3.385 "NCc1cccc2c(OC[P](O)(O)=O)cc(nc12)C(O)=O"                                                                               
V4F SMILES           CACTVS               3.385 "NCc1cccc2c(OC[P](O)(O)=O)cc(nc12)C(O)=O"                                                                               
V4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)O)OCP(=O)(O)O)CN"                                                                             
V4F SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)O)OCP(=O)(O)O)CN"                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           V4F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "8-(aminomethyl)-4-(phosphonomethoxy)quinoline-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V4F "Create component"         2023-02-21 PDBE 
V4F "Modify leaving atom flag" 2023-03-14 PDBE 
V4F "Modify descriptor"        2023-03-23 PDBE 
V4F "Initial release"          2023-07-19 RCSB 
V4F "Modify linking type"      2023-08-10 PDBE 
V4F "Modify backbone"          2023-11-03 PDBE 
# 
