data_LOH
# 
_chem_comp.id                                    LOH 
_chem_comp.name                                  3,4-dihydroxylysine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H14 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-08 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        178.186 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LOH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5OYA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LOH NZ  NZ  N 0 1 N N N N N N 123.470 -242.442 525.232 -4.440 -0.366 -0.656 NZ  LOH 1  
LOH CE  CE  C 0 1 N N N N N N 122.178 -243.093 525.152 -3.156 -0.738 -0.048 CE  LOH 2  
LOH CD  CD  C 0 1 N N N N N N 121.252 -242.684 526.225 -2.081 0.265  -0.473 CD  LOH 3  
LOH CG  CG  C 0 1 N N S N N N 119.824 -243.220 525.958 -0.743 -0.123 0.160  CG  LOH 4  
LOH CB  CB  C 0 1 N N S N N N 118.790 -242.704 526.951 0.356  0.804  -0.363 CB  LOH 5  
LOH CA  CA  C 0 1 N N S Y N N 119.262 -243.071 528.268 1.683  0.455  0.315  CA  LOH 6  
LOH N   N   N 0 1 N N N Y Y N 118.675 -244.408 528.462 2.708  1.428  -0.086 N   LOH 7  
LOH C   C   C 0 1 N N N Y N Y 118.407 -242.197 529.094 2.112  -0.928 -0.104 C   LOH 8  
LOH O   O   O 0 1 N N N Y N Y 118.725 -241.036 529.421 2.946  -1.066 -0.967 O   LOH 9  
LOH OH1 OH1 O 0 1 N N N N N N 117.447 -242.985 526.674 0.015  2.161  -0.071 OH1 LOH 10 
LOH OH2 OH2 O 0 1 N N N N N N 119.421 -242.709 524.680 -0.835 0.002  1.581  OH2 LOH 11 
LOH OXT O1  O 0 1 N Y N Y N Y 117.264 -242.572 530.107 1.568  -2.006 0.482  O1  LOH 12 
LOH H1  H1  H 0 1 N N N N N N 124.050 -242.759 524.482 -5.167 -1.013 -0.390 H1  LOH 13 
LOH H12 H2  H 0 1 N N N N N N 123.349 -241.452 525.164 -4.693 0.581  -0.416 H2  LOH 14 
LOH H4  H4  H 0 1 N N N N N N 121.721 -242.844 524.183 -3.252 -0.728 1.038  H4  LOH 15 
LOH H5  H5  H 0 1 N N N N N N 122.330 -244.180 525.218 -2.872 -1.737 -0.379 H5  LOH 16 
LOH H6  H6  H 0 1 N N N N N N 121.613 -243.084 527.184 -1.985 0.255  -1.559 H6  LOH 17 
LOH H7  H7  H 0 1 N N N N N N 121.221 -241.586 526.274 -2.364 1.264  -0.142 H7  LOH 18 
LOH H8  H8  H 0 1 N N N N N N 119.835 -244.320 525.963 -0.503 -1.154 -0.099 H8  LOH 19 
LOH H9  H9  H 0 1 N N N N N N 118.884 -241.609 526.903 0.455  0.678  -1.441 H9  LOH 20 
LOH HA  H10 H 0 1 N N N Y N N 120.345 -242.990 528.442 1.557  0.484  1.397  H10 LOH 21 
LOH H   H11 H 0 1 N N N Y Y N 118.942 -244.763 529.358 2.784  1.480  -1.090 H11 LOH 22 
LOH H2  H12 H 0 1 N Y N Y Y N 117.678 -244.345 528.412 2.519  2.336  0.311  H12 LOH 23 
LOH H14 H14 H 0 1 N N N N N N 116.899 -242.617 527.357 -0.089 2.345  0.873  H14 LOH 24 
LOH H15 H15 H 0 1 N N N N N N 118.545 -243.016 524.477 -1.046 0.896  1.884  H15 LOH 25 
LOH HXT H16 H 0 1 N Y N Y N Y 117.109 -241.842 530.695 1.875  -2.872 0.180  H16 LOH 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LOH OH2 CG  SING N N 1  
LOH CE  NZ  SING N N 2  
LOH CE  CD  SING N N 3  
LOH CG  CD  SING N N 4  
LOH CG  CB  SING N N 5  
LOH OH1 CB  SING N N 6  
LOH CB  CA  SING N N 7  
LOH CA  N   SING N N 8  
LOH CA  C   SING N N 9  
LOH C   O   DOUB N N 10 
LOH C   OXT SING N N 11 
LOH NZ  H1  SING N N 12 
LOH NZ  H12 SING N N 13 
LOH CE  H4  SING N N 14 
LOH CE  H5  SING N N 15 
LOH CD  H6  SING N N 16 
LOH CD  H7  SING N N 17 
LOH CG  H8  SING N N 18 
LOH CB  H9  SING N N 19 
LOH CA  HA  SING N N 20 
LOH N   H   SING N N 21 
LOH N   H2  SING N N 22 
LOH OH1 H14 SING N N 23 
LOH OH2 H15 SING N N 24 
LOH OXT HXT SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LOH InChI            InChI                1.03  "InChI=1S/C6H14N2O4/c7-2-1-3(9)5(10)4(8)6(11)12/h3-5,9-10H,1-2,7-8H2,(H,11,12)/t3-,4-,5+/m0/s1" 
LOH InChIKey         InChI                1.03  ALWBRQWTMGZSIM-VAYJURFESA-N                                                                     
LOH SMILES_CANONICAL CACTVS               3.385 "NCC[C@H](O)[C@@H](O)[C@H](N)C(O)=O"                                                            
LOH SMILES           CACTVS               3.385 "NCC[CH](O)[CH](O)[CH](N)C(O)=O"                                                                
LOH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CN)[C@@H]([C@H]([C@@H](C(=O)O)N)O)O"                                                         
LOH SMILES           "OpenEye OEToolkits" 2.0.6 "C(CN)C(C(C(C(=O)O)N)O)O"                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           LOH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{S})-2,6-bis(azanyl)-3,4-bis(oxidanyl)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LOH "Create component"   2017-09-08 EBI  
LOH "Initial release"    2018-06-27 RCSB 
LOH "Other modification" 2019-04-10 EBI  
LOH "Modify backbone"    2023-11-03 PDBE 
# 
