data_R8H
#

_chem_comp.id                                   R8H
_chem_comp.name                                 "(2~{R})-5-oxidanylidene-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]-1-(phenylmethyl)pyrrolidine-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H30 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-18
_chem_comp.pdbx_modified_date                   2021-07-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.562
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R8H
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AEH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R8H  N1   N1   N  0  1  N  N  N   5.203  -1.189  25.196   1.952  -1.646   0.361  N1   R8H   1  
R8H  N3   N2   N  0  1  Y  N  N   6.401   0.622  17.460  -6.315  -0.670  -0.679  N3   R8H   2  
R8H  C4   C1   C  0  1  Y  N  N   5.539  -6.793  23.733   0.736   2.905  -2.284  C4   R8H   3  
R8H  C5   C2   C  0  1  Y  N  N   4.775  -7.207  24.812   1.757   2.487  -3.116  C5   R8H   4  
R8H  C6   C3   C  0  1  Y  N  N   5.160  -6.890  26.092   2.941   2.021  -2.576  C6   R8H   5  
R8H  C7   C4   C  0  1  Y  N  N   6.309  -6.159  26.299   3.105   1.974  -1.204  C7   R8H   6  
R8H  C8   C5   C  0  1  Y  N  N   7.082  -5.752  25.221   2.083   2.392  -0.372  C8   R8H   7  
R8H  C10  C6   C  0  1  N  N  R   6.162  -1.442  24.119   1.146  -0.807   1.256  C10  R8H   8  
R8H  C13  C7   C  0  1  N  N  N   4.869   0.112  25.337   1.866  -2.944   0.700  C13  R8H   9  
R8H  C15  C8   C  0  1  Y  N  N   3.366  -2.754  25.810   4.180  -0.983  -0.335  C15  R8H  10  
R8H  C17  C9   C  0  1  Y  N  N   0.969  -2.564  25.967   6.447  -1.752  -0.374  C17  R8H  11  
R8H  C20  C10  C  0  1  Y  N  N   3.197  -3.909  25.059   4.550   0.065   0.487  C20  R8H  12  
R8H  C21  C11  C  0  1  N  N  N   7.194  -3.103  19.865  -3.157   1.432   1.561  C21  R8H  13  
R8H  C22  C12  C  0  1  N  N  N   7.626  -1.278  18.298  -4.596  -0.466   1.045  C22  R8H  14  
R8H  C24  C13  C  0  1  Y  N  N   6.031   0.065  19.753  -4.539  -2.204  -0.747  C24  R8H  15  
R8H  C26  C14  C  0  1  Y  N  N   4.810   1.851  18.762  -6.279  -2.298  -2.372  C26  R8H  16  
R8H  O3   O1   O  0  1  N  N  N   6.037  -3.238  19.503  -3.260   1.153   2.737  O3   R8H  17  
R8H  N2   N3   N  0  1  N  N  N   7.945  -2.063  19.483  -3.786   0.684   0.633  N2   R8H  18  
R8H  C23  C15  C  0  1  Y  N  N   6.657  -0.141  18.533  -5.186  -1.127  -0.173  C23  R8H  19  
R8H  C27  C16  C  0  1  Y  N  N   5.482   1.593  17.592  -6.869  -1.217  -1.744  C27  R8H  20  
R8H  C25  C17  C  0  1  Y  N  N   5.091   1.075  19.851  -5.091  -2.806  -1.868  C25  R8H  21  
R8H  C    C18  C  0  1  N  N  S   7.862  -4.180  20.715  -2.325   2.614   1.137  C    R8H  22  
R8H  O    O2   O  0  1  N  N  N   9.157  -3.737  21.065  -1.860   3.309   2.296  O    R8H  23  
R8H  C1   C19  C  0  1  N  N  R   7.023  -4.472  21.982  -1.126   2.128   0.320  C1   R8H  24  
R8H  C2   C20  C  0  1  N  N  N   7.573  -5.681  22.750  -0.215   3.313  -0.004  C2   R8H  25  
R8H  C3   C21  C  0  1  Y  N  N   6.710  -6.072  23.925   0.899   2.858  -0.912  C3   R8H  26  
R8H  N    N4   N  0  1  N  N  N   7.001  -3.318  22.874  -0.378   1.134   1.094  N    R8H  27  
R8H  C9   C22  C  0  1  N  N  N   5.910  -2.604  23.148   0.376   0.215   0.460  C9   R8H  28  
R8H  O1   O3   O  0  1  N  N  N   4.830  -2.809  22.609   0.436   0.210  -0.752  O1   R8H  29  
R8H  O2   O4   O  0  1  N  N  N   4.045   0.540  26.128   2.435  -3.850   0.128  O2   R8H  30  
R8H  C12  C23  C  0  1  N  N  N   5.703   0.918  24.386   0.958  -3.110   1.898  C12  R8H  31  
R8H  C11  C24  C  0  1  N  N  N   6.225  -0.098  23.380   0.175  -1.776   1.966  C11  R8H  32  
R8H  C14  C25  C  0  1  N  N  N   4.748  -2.231  26.118   2.743  -1.136  -0.762  C14  R8H  33  
R8H  C19  C26  C  0  1  Y  N  N   1.928  -4.385  24.765   5.868   0.205   0.878  C19  R8H  34  
R8H  C18  C27  C  0  1  Y  N  N   0.815  -3.712  25.218   6.817  -0.703   0.447  C18  R8H  35  
R8H  C16  C28  C  0  1  Y  N  N   2.236  -2.089  26.264   5.130  -1.888  -0.770  C16  R8H  36  
R8H  H1   H1   H  0  1  N  N  N   5.220  -7.034  22.730  -0.188   3.273  -2.705  H1   R8H  37  
R8H  H2   H2   H  0  1  N  N  N   3.875  -7.780  24.646   1.630   2.523  -4.188  H2   R8H  38  
R8H  H3   H3   H  0  1  N  N  N   4.564  -7.213  26.933   3.739   1.693  -3.226  H3   R8H  39  
R8H  H4   H4   H  0  1  N  N  N   6.609  -5.902  27.304   4.030   1.609  -0.783  H4   R8H  40  
R8H  H5   H5   H  0  1  N  N  N   7.982  -5.180  25.394   2.210   2.355   0.700  H5   R8H  41  
R8H  H6   H6   H  0  1  N  N  N   7.149  -1.608  24.575   1.786  -0.312   1.986  H6   R8H  42  
R8H  H7   H7   H  0  1  N  N  N   0.098  -2.033  26.323   7.189  -2.460  -0.714  H7   R8H  43  
R8H  H8   H8   H  0  1  N  N  N   4.064  -4.443  24.699   3.808   0.775   0.823  H8   R8H  44  
R8H  H9   H9   H  0  1  N  N  N   7.187  -1.953  17.548  -3.967  -1.180   1.578  H9   R8H  45  
R8H  H10  H10  H  0  1  N  N  N   8.562  -0.854  17.906  -5.398  -0.129   1.701  H10  R8H  46  
R8H  H11  H11  H  0  1  N  N  N   6.272  -0.550  20.608  -3.615  -2.573  -0.328  H11  R8H  47  
R8H  H12  H12  H  0  1  N  N  N   4.080   2.645  18.819  -6.737  -2.741  -3.243  H12  R8H  48  
R8H  H13  H13  H  0  1  N  N  N   8.748  -1.818  20.026  -3.704   0.907  -0.307  H13  R8H  49  
R8H  H14  H14  H  0  1  N  N  N   5.259   2.205  16.730  -7.795  -0.816  -2.130  H14  R8H  50  
R8H  H15  H15  H  0  1  N  N  N   4.580   1.250  20.786  -4.608  -3.649  -2.338  H15  R8H  51  
R8H  H16  H16  H  0  1  N  N  N   7.926  -5.104  20.122  -2.931   3.286   0.530  H16  R8H  52  
R8H  H17  H17  H  0  1  N  N  N   9.586  -4.398  21.595  -1.312   2.772   2.885  H17  R8H  53  
R8H  H18  H18  H  0  1  N  N  N   5.996  -4.704  21.665  -1.478   1.676  -0.608  H18  R8H  54  
R8H  H19  H19  H  0  1  N  N  N   7.636  -6.536  22.061  -0.794   4.091  -0.502  H19  R8H  55  
R8H  H20  H20  H  0  1  N  N  N   8.579  -5.434  23.120   0.208   3.710   0.919  H20  R8H  56  
R8H  H21  H21  H  0  1  N  N  N   7.860  -3.045  23.308  -0.426   1.138   2.063  H21  R8H  57  
R8H  H22  H22  H  0  1  N  N  N   6.536   1.404  24.915   0.271  -3.942   1.744  H22  R8H  58  
R8H  H23  H23  H  0  1  N  N  N   5.091   1.682  23.885   1.545  -3.264   2.803  H23  R8H  59  
R8H  H24  H24  H  0  1  N  N  N   7.260   0.138  23.091   0.011  -1.475   3.001  H24  R8H  60  
R8H  H25  H25  H  0  1  N  N  N   5.589  -0.118  22.483  -0.770  -1.846   1.427  H25  R8H  61  
R8H  H26  H26  H  0  1  N  N  N   5.456  -3.071  26.069   2.684  -1.835  -1.596  H26  R8H  62  
R8H  H27  H27  H  0  1  N  N  N   4.743  -1.815  27.136   2.351  -0.167  -1.071  H27  R8H  63  
R8H  H28  H28  H  0  1  N  N  N   1.812  -5.285  24.180   6.157   1.025   1.519  H28  R8H  64  
R8H  H29  H29  H  0  1  N  N  N  -0.173  -4.081  24.988   7.847  -0.594   0.753  H29  R8H  65  
R8H  H30  H30  H  0  1  N  N  N   2.345  -1.192  26.855   4.842  -2.705  -1.416  H30  R8H  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R8H  N3   C27  DOUB  Y  N   1  
R8H  N3   C23  SING  Y  N   2  
R8H  C27  C26  SING  Y  N   3  
R8H  C22  C23  SING  N  N   4  
R8H  C22  N2   SING  N  N   5  
R8H  C23  C24  DOUB  Y  N   6  
R8H  C26  C25  DOUB  Y  N   7  
R8H  N2   C21  SING  N  N   8  
R8H  O3   C21  DOUB  N  N   9  
R8H  C24  C25  SING  Y  N  10  
R8H  C21  C    SING  N  N  11  
R8H  C    O    SING  N  N  12  
R8H  C    C1   SING  N  N  13  
R8H  C1   C2   SING  N  N  14  
R8H  C1   N    SING  N  N  15  
R8H  O1   C9   DOUB  N  N  16  
R8H  C2   C3   SING  N  N  17  
R8H  N    C9   SING  N  N  18  
R8H  C9   C10  SING  N  N  19  
R8H  C11  C10  SING  N  N  20  
R8H  C11  C12  SING  N  N  21  
R8H  C4   C3   DOUB  Y  N  22  
R8H  C4   C5   SING  Y  N  23  
R8H  C3   C8   SING  Y  N  24  
R8H  C10  N1   SING  N  N  25  
R8H  C12  C13  SING  N  N  26  
R8H  C19  C20  DOUB  Y  N  27  
R8H  C19  C18  SING  Y  N  28  
R8H  C5   C6   DOUB  Y  N  29  
R8H  C20  C15  SING  Y  N  30  
R8H  N1   C13  SING  N  N  31  
R8H  N1   C14  SING  N  N  32  
R8H  C18  C17  DOUB  Y  N  33  
R8H  C8   C7   DOUB  Y  N  34  
R8H  C13  O2   DOUB  N  N  35  
R8H  C15  C14  SING  N  N  36  
R8H  C15  C16  DOUB  Y  N  37  
R8H  C17  C16  SING  Y  N  38  
R8H  C6   C7   SING  Y  N  39  
R8H  C4   H1   SING  N  N  40  
R8H  C5   H2   SING  N  N  41  
R8H  C6   H3   SING  N  N  42  
R8H  C7   H4   SING  N  N  43  
R8H  C8   H5   SING  N  N  44  
R8H  C10  H6   SING  N  N  45  
R8H  C17  H7   SING  N  N  46  
R8H  C20  H8   SING  N  N  47  
R8H  C22  H9   SING  N  N  48  
R8H  C22  H10  SING  N  N  49  
R8H  C24  H11  SING  N  N  50  
R8H  C26  H12  SING  N  N  51  
R8H  N2   H13  SING  N  N  52  
R8H  C27  H14  SING  N  N  53  
R8H  C25  H15  SING  N  N  54  
R8H  C    H16  SING  N  N  55  
R8H  O    H17  SING  N  N  56  
R8H  C1   H18  SING  N  N  57  
R8H  C2   H19  SING  N  N  58  
R8H  C2   H20  SING  N  N  59  
R8H  N    H21  SING  N  N  60  
R8H  C12  H22  SING  N  N  61  
R8H  C12  H23  SING  N  N  62  
R8H  C11  H24  SING  N  N  63  
R8H  C11  H25  SING  N  N  64  
R8H  C14  H26  SING  N  N  65  
R8H  C14  H27  SING  N  N  66  
R8H  C19  H28  SING  N  N  67  
R8H  C18  H29  SING  N  N  68  
R8H  C16  H30  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R8H  InChI             InChI                 1.03   "InChI=1S/C28H30N4O4/c33-25-15-14-24(32(25)19-21-11-5-2-6-12-21)27(35)31-23(17-20-9-3-1-4-10-20)26(34)28(36)30-18-22-13-7-8-16-29-22/h1-13,16,23-24,26,34H,14-15,17-19H2,(H,30,36)(H,31,35)/t23-,24-,26+/m1/s1"  
R8H  InChIKey          InChI                 1.03   LGWQYJCCERJRJX-MZKUHISZSA-N  
R8H  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]([C@@H](Cc1ccccc1)NC(=O)[C@H]2CCC(=O)N2Cc3ccccc3)C(=O)NCc4ccccn4"  
R8H  SMILES            CACTVS                3.385  "O[CH]([CH](Cc1ccccc1)NC(=O)[CH]2CCC(=O)N2Cc3ccccc3)C(=O)NCc4ccccn4"  
R8H  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[C@H]([C@@H](C(=O)NCc2ccccn2)O)NC(=O)[C@H]3CCC(=O)N3Cc4ccccc4"  
R8H  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC(C(C(=O)NCc2ccccn2)O)NC(=O)C3CCC(=O)N3Cc4ccccc4"  
#
_pdbx_chem_comp_identifier.comp_id          R8H
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-5-oxidanylidene-~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(pyridin-2-ylmethylamino)butan-2-yl]-1-(phenylmethyl)pyrrolidine-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R8H  "Create component"  2020-09-18  PDBE  
R8H  "Initial release"   2021-07-07  RCSB  
##
