data_X9H
# 
_chem_comp.id                                    X9H 
_chem_comp.name                                  "N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H20 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-07 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        396.445 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X9H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F1H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X9H C01 C1  C 0 1 N N N N N N 50.534 3.142  -24.519 -0.023 -1.972 1.978  C01 X9H 1  
X9H C02 C2  C 0 1 N N N N N N 50.677 2.914  -22.936 -1.109 -1.038 1.509  C02 X9H 2  
X9H C03 C3  C 0 1 N N N N N N 49.717 3.357  -22.040 -2.401 -1.366 1.605  C03 X9H 3  
X9H C04 C4  C 0 1 N N S N N N 50.032 3.557  -20.527 -3.489 -0.469 1.092  C04 X9H 4  
X9H C06 C5  C 0 1 N N N N N N 50.028 5.981  -19.680 -4.530 -1.758 -0.694 C06 X9H 5  
X9H C07 C6  C 0 1 N N N N N N 50.649 7.341  -19.351 -4.750 -2.045 -2.120 C07 X9H 6  
X9H C08 C7  C 0 1 N N N N N N 51.973 7.592  -19.442 -5.561 -3.036 -2.482 C08 X9H 7  
X9H C10 C8  C 0 1 N N N N N N 50.920 2.285  -20.028 -3.153 1.012  1.251  C10 X9H 8  
X9H C12 C9  C 0 1 Y N N N N N 51.717 1.801  -22.518 -0.796 0.278  0.931  C12 X9H 9  
X9H C13 C10 C 0 1 Y N N N N N 52.651 0.934  -23.175 0.401  0.763  0.461  C13 X9H 10 
X9H C14 C11 C 0 1 Y N N N N N 52.953 0.816  -24.688 1.701  0.058  0.441  C14 X9H 11 
X9H C15 C12 C 0 1 Y N N N N N 52.691 -0.354 -25.415 2.306  -0.262 -0.768 C15 X9H 12 
X9H C16 C13 C 0 1 Y N N N N N 52.953 -0.516 -26.846 3.541  -0.931 -0.731 C16 X9H 13 
X9H C17 C14 C 0 1 Y N N N N N 52.671 -1.759 -27.581 4.213  -1.288 -1.913 C17 X9H 14 
X9H C18 C15 C 0 1 Y N N N N N 52.944 -1.878 -28.943 5.408  -1.935 -1.839 C18 X9H 15 
X9H C19 C16 C 0 1 Y N N N N N 53.515 -0.748 -29.672 5.975  -2.249 -0.605 C19 X9H 16 
X9H C20 C17 C 0 1 Y N N N N N 53.792 0.446  -29.001 5.352  -1.919 0.559  C20 X9H 17 
X9H C21 C18 C 0 1 Y N N N N N 53.518 0.607  -27.542 4.116  -1.250 0.525  C21 X9H 18 
X9H C23 C19 C 0 1 Y N N N N N 53.534 1.923  -25.484 2.339  -0.287 1.646  C23 X9H 19 
X9H C24 C20 C 0 1 Y N N N N N 53.327 0.093  -22.139 0.127  2.113  -0.013 C24 X9H 20 
X9H C25 C21 C 0 1 Y N N N N N 54.369 -0.979 -22.143 0.935  3.101  -0.598 C25 X9H 21 
X9H C28 C22 C 0 1 Y N N N N N 54.152 -1.080 -19.745 -0.975 4.427  -0.687 C28 X9H 22 
X9H C30 C23 C 0 1 Y N N N N N 52.779 0.487  -20.866 -1.253 2.355  0.213  C30 X9H 23 
X9H N05 N1  N 0 1 N N N N N N 50.739 4.854  -20.232 -3.708 -0.755 -0.328 N05 X9H 24 
X9H N11 N2  N 0 1 Y N N N N N 51.795 1.534  -21.083 -1.780 1.251  0.783  N11 X9H 25 
X9H N22 N3  N 0 1 Y N N N N N 53.792 1.827  -26.810 3.486  -0.915 1.657  N22 X9H 26 
X9H N26 N4  N 0 1 N N N N N N 54.978 -1.435 -23.360 2.284  2.908  -0.833 N26 X9H 27 
X9H N27 N5  N 0 1 Y N N N N N 54.753 -1.541 -20.923 0.310  4.241  -0.911 N27 X9H 28 
X9H N29 N6  N 0 1 Y N N N N N 53.197 -0.106 -19.660 -1.779 3.532  -0.139 N29 X9H 29 
X9H O09 O1  O 0 1 N N N N N N 48.826 5.894  -19.433 -5.089 -2.427 0.154  O09 X9H 30 
X9H H1  H1  H 0 1 N N N N N N 49.792 3.931  -24.711 0.197  -1.775 3.027  H1  X9H 31 
X9H H2  H2  H 0 1 N N N N N N 51.506 3.444  -24.935 -0.355 -3.003 1.863  H2  X9H 32 
X9H H3  H3  H 0 1 N N N N N N 50.206 2.207  -24.996 0.876  -1.811 1.382  H3  X9H 33 
X9H H5  H5  H 0 1 N N N N N N 48.722 3.570  -22.401 -2.670 -2.305 2.065  H5  X9H 34 
X9H H7  H7  H 0 1 N N N N N N 49.083 3.534  -19.972 -4.407 -0.681 1.640  H7  X9H 35 
X9H H8  H8  H 0 1 N N N N N N 49.996 8.139  -19.030 -4.253 -1.452 -2.873 H8  X9H 36 
X9H H9  H9  H 0 1 N N N N N N 52.355 8.572  -19.197 -5.723 -3.246 -3.529 H9  X9H 37 
X9H H10 H10 H 0 1 N N N N N N 52.650 6.813  -19.760 -6.058 -3.629 -1.728 H10 X9H 38 
X9H H11 H11 H 0 1 N N N N N N 50.223 1.549  -19.599 -3.848 1.609  0.660  H11 X9H 39 
X9H H12 H12 H 0 1 N N N N N N 51.598 2.649  -19.242 -3.235 1.293  2.301  H12 X9H 40 
X9H H13 H13 H 0 1 N N N N N N 52.267 -1.193 -24.883 1.840  -0.005 -1.708 H13 X9H 41 
X9H H14 H14 H 0 1 N N N N N N 52.243 -2.598 -27.053 3.783  -1.050 -2.875 H14 X9H 42 
X9H H15 H15 H 0 1 N N N N N N 52.734 -2.804 -29.458 5.923  -2.209 -2.747 H15 X9H 43 
X9H H16 H16 H 0 1 N N N N N N 53.723 -0.835 -30.728 6.924  -2.763 -0.572 H16 X9H 44 
X9H H17 H17 H 0 1 N N N N N N 54.215 1.273  -29.552 5.805  -2.170 1.507  H17 X9H 45 
X9H H18 H18 H 0 1 N N N N N N 53.763 2.852  -24.982 1.868  -0.032 2.584  H18 X9H 46 
X9H H19 H19 H 0 1 N N N N N N 54.472 -1.536 -18.820 -1.401 5.378  -0.971 H19 X9H 47 
X9H H20 H20 H 0 1 N N N N N N 51.717 4.935  -20.422 -3.262 -0.222 -1.005 H20 X9H 48 
X9H H21 H21 H 0 1 N N N N N N 55.647 -2.149 -23.152 2.703  2.067  -0.593 H21 X9H 49 
X9H H22 H22 H 0 1 N N N N N N 54.274 -1.804 -23.967 2.811  3.614  -1.239 H22 X9H 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X9H C19 C20 DOUB Y N 1  
X9H C19 C18 SING Y N 2  
X9H C20 C21 SING Y N 3  
X9H C18 C17 DOUB Y N 4  
X9H C17 C16 SING Y N 5  
X9H C21 C16 DOUB Y N 6  
X9H C21 N22 SING Y N 7  
X9H C16 C15 SING Y N 8  
X9H N22 C23 DOUB Y N 9  
X9H C23 C14 SING Y N 10 
X9H C15 C14 DOUB Y N 11 
X9H C14 C13 SING N N 12 
X9H C01 C02 SING N N 13 
X9H N26 C25 SING N N 14 
X9H C13 C12 DOUB Y N 15 
X9H C13 C24 SING Y N 16 
X9H C02 C12 SING N N 17 
X9H C02 C03 DOUB N N 18 
X9H C12 N11 SING Y N 19 
X9H C25 C24 DOUB Y N 20 
X9H C25 N27 SING Y N 21 
X9H C24 C30 SING Y N 22 
X9H C03 C04 SING N N 23 
X9H N11 C30 SING Y N 24 
X9H N11 C10 SING N N 25 
X9H N27 C28 DOUB Y N 26 
X9H C30 N29 DOUB Y N 27 
X9H C04 N05 SING N N 28 
X9H C04 C10 SING N N 29 
X9H N05 C06 SING N N 30 
X9H C28 N29 SING Y N 31 
X9H C06 O09 DOUB N N 32 
X9H C06 C07 SING N N 33 
X9H C08 C07 DOUB N N 34 
X9H C01 H1  SING N N 35 
X9H C01 H2  SING N N 36 
X9H C01 H3  SING N N 37 
X9H C03 H5  SING N N 38 
X9H C04 H7  SING N N 39 
X9H C07 H8  SING N N 40 
X9H C08 H9  SING N N 41 
X9H C08 H10 SING N N 42 
X9H C10 H11 SING N N 43 
X9H C10 H12 SING N N 44 
X9H C15 H13 SING N N 45 
X9H C17 H14 SING N N 46 
X9H C18 H15 SING N N 47 
X9H C19 H16 SING N N 48 
X9H C20 H17 SING N N 49 
X9H C23 H18 SING N N 50 
X9H C28 H19 SING N N 51 
X9H N05 H20 SING N N 52 
X9H N26 H21 SING N N 53 
X9H N26 H22 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X9H SMILES           ACDLabs              12.01 "C=CC(=O)NC1C=C(C)c2c(c3c(ncnc3N)n2C1)c1cc2ccccc2nc1"                                                                                                                           
X9H InChI            InChI                1.06  "InChI=1S/C23H20N6O/c1-3-18(30)28-16-8-13(2)21-19(15-9-14-6-4-5-7-17(14)25-10-15)20-22(24)26-12-27-23(20)29(21)11-16/h3-10,12,16H,1,11H2,2H3,(H,28,30)(H2,24,26,27)/t16-/m0/s1" 
X9H InChIKey         InChI                1.06  MKCYPWYURWOKST-INIZCTEOSA-N                                                                                                                                                     
X9H SMILES_CANONICAL CACTVS               3.385 "CC1=C[C@@H](Cn2c3ncnc(N)c3c(c4cnc5ccccc5c4)c12)NC(=O)C=C"                                                                                                                      
X9H SMILES           CACTVS               3.385 "CC1=C[CH](Cn2c3ncnc(N)c3c(c4cnc5ccccc5c4)c12)NC(=O)C=C"                                                                                                                        
X9H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C[C@@H](Cn2c1c(c3c2ncnc3N)c4cc5ccccc5nc4)NC(=O)C=C"                                                                                                                        
X9H SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=CC(Cn2c1c(c3c2ncnc3N)c4cc5ccccc5nc4)NC(=O)C=C"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X9H "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide" 
X9H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(8~{S})-4-azanyl-6-methyl-5-quinolin-3-yl-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X9H "Create component" 2022-11-07 RCSB 
X9H "Initial release"  2023-11-08 RCSB 
# 
