data_3XI
#

_chem_comp.id                                   3XI
_chem_comp.name                                 "N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]cyclohexanecarboxamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H44 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-02-01
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       492.651
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3XI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7WO1
_chem_comp.pdbx_subcomponent_list               "RXK VAL LEU ELF"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3XI  C22  C6   C  0  1  N  N  N  -18.538  12.498  -18.399   8.787   1.098  -1.161  C01   RXK   1  
3XI  O25  O2   O  0  1  N  N  N  -21.159  14.261  -22.016   5.155  -0.361   1.684  O01   RXK   2  
3XI  C21  C5   C  0  1  N  N  N  -18.126  12.006  -19.782   8.653  -0.315  -0.590  C02   RXK   3  
3XI  C20  C4   C  0  1  N  N  N  -18.744  12.827  -20.917   7.452  -0.370   0.357  C03   RXK   4  
3XI  C19  C20  C  0  1  N  N  N  -19.362  14.163  -20.493   6.179  -0.008  -0.412  C04   RXK   5  
3XI  C24  C7   C  0  1  N  N  N  -20.303  14.071  -19.289   6.314   1.405  -0.984  C05   RXK   6  
3XI  C23  C21  C  0  1  N  N  N  -20.016  12.877  -18.384   7.515   1.460  -1.930  C06   RXK   7  
3XI  C18  C19  C  0  1  N  N  N  -20.148  14.764  -21.655   4.997  -0.062   0.520  C07   RXK   8  
3XI  N17  N3   N  0  1  N  N  N  -19.652  15.965  -22.302   3.762   0.222   0.059  N     VAL   9  
3XI  C13  C2   C  0  1  N  N  S  -20.378  16.576  -23.397   2.612   0.169   0.965  CA    VAL  10  
3XI  C12  C16  C  0  1  N  N  N  -19.562  16.537  -24.681   1.358  -0.088   0.171  C     VAL  11  
3XI  O26  O3   O  0  1  N  N  N  -18.441  16.918  -24.678   1.346   0.112  -1.026  O     VAL  12  
3XI  C14  C17  C  0  1  N  N  N  -20.594  18.044  -23.052   2.484   1.503   1.704  CB    VAL  13  
3XI  C15  C3   C  0  1  N  N  N  -20.812  18.218  -21.553   3.692   1.695   2.623  CG1   VAL  14  
3XI  C16  C18  C  0  1  N  N  N  -21.726  18.654  -23.873   2.428   2.645   0.689  CG2   VAL  15  
3XI  N11  N2   N  0  1  N  N  N  -20.163  16.054  -25.907   0.249  -0.539   0.789  N     LEU  16  
3XI  C06  C12  C  0  1  N  N  S  -19.369  16.043  -27.118  -0.934  -0.898   0.003  CA    LEU  17  
3XI  C05  C11  C  0  1  N  N  N  -19.393  17.461  -27.682  -2.165  -0.775   0.862  C     LEU  18  
3XI  O27  O4   O  0  1  N  N  N  -20.419  18.047  -27.764  -2.065  -0.421   2.018  O     LEU  19  
3XI  C07  C13  C  0  1  N  N  N  -19.952  15.053  -28.124  -0.800  -2.340  -0.491  CB    LEU  20  
3XI  C08  C14  C  0  1  N  N  N  -19.620  13.606  -27.760   0.378  -2.439  -1.463  CG    LEU  21  
3XI  C10  C1   C  0  1  N  N  N  -20.680  13.012  -26.835   0.590  -3.901  -1.860  CD1   LEU  22  
3XI  C09  C15  C  0  1  N  N  N  -19.479  12.747  -29.013   0.078  -1.609  -2.713  CD2   LEU  23  
3XI  C31  C24  C  0  1  N  N  N  -19.047  22.125  -25.616  -5.677   3.162  -0.056  C6    ELF  24  
3XI  C03  C10  C  0  1  N  N  S  -18.212  19.457  -28.622  -4.576  -0.936   1.182  C11   ELF  25  
3XI  C30  C23  C  0  1  N  N  N  -18.959  20.765  -26.107  -5.577   1.810   0.660  C13   ELF  26  
3XI  C34  C26  C  0  1  N  N  N  -16.466  21.027  -25.452  -6.755   0.932  -1.341  C15   ELF  27  
3XI  C28  C8   C  0  1  N  N  N  -17.265  20.325  -27.796  -5.790  -0.653   0.296  C17   ELF  28  
3XI  C02  C9   C  0  1  N  N  N  -17.806  19.479  -30.094  -4.793  -2.222   1.936  C24   ELF  29  
3XI  C29  C22  C  0  1  N  N  S  -17.620  20.277  -26.258  -5.612   0.701  -0.395  C25   ELF  30  
3XI  C32  C25  C  0  1  N  N  N  -18.382  22.245  -24.298  -7.068   3.286  -0.677  C27   ELF  31  
3XI  N04  N1   N  0  1  N  N  N  -18.163  18.103  -28.104  -3.378  -1.056   0.347  N3    ELF  32  
3XI  N33  N4   N  0  1  N  N  N  -16.877  22.069  -24.411  -7.381   2.103  -1.468  N4    ELF  33  
3XI  O01  O1   O  0  1  N  N  N  -17.800  20.503  -30.693  -4.028  -3.145   1.791  O3    ELF  34  
3XI  O35  O5   O  0  1  N  N  N  -15.325  20.779  -25.649  -7.130   0.004  -2.027  O4    ELF  35  
3XI  H12  H12  H  0  1  N  N  N  -18.362  11.699  -17.663   8.934   1.807  -0.346  H1    RXK  36  
3XI  H13  H13  H  0  1  N  N  N  -17.936  13.380  -18.134   9.643   1.137  -1.835  H2    RXK  37  
3XI  H10  H10  H  0  1  N  N  N  -18.446  10.959  -19.892   8.506  -1.024  -1.404  H3    RXK  38  
3XI  H8   H8   H  0  1  N  N  N  -19.533  12.220  -21.385   7.356  -1.377   0.764  H5    RXK  39  
3XI  H31  H31  H  0  1  N  N  N  -18.544  14.853  -20.237   6.033  -0.717  -1.227  H6    RXK  40  
3XI  H14  H14  H  0  1  N  N  N  -20.200  14.991  -18.695   5.408   1.663  -1.531  H7    RXK  41  
3XI  H15  H15  H  0  1  N  N  N  -21.335  13.987  -19.659   6.461   2.114  -0.169  H8    RXK  42  
3XI  H32  H32  H  0  1  N  N  N  -20.308  13.132  -17.355   7.611   2.467  -2.337  H9    RXK  43  
3XI  H33  H33  H  0  1  N  N  N  -20.608  12.017  -18.731   7.368   0.751  -2.745  H10   RXK  44  
3XI  H11  H11  H  0  1  N  N  N  -17.031  12.065  -19.863   9.559  -0.573  -0.042  H11   RXK  45  
3XI  H9   H9   H  0  1  N  N  N  -17.955  13.036  -21.655   7.598   0.339   1.171  H12   RXK  46  
3XI  H43  H43  H  0  1  N  N  N  -18.797  16.377  -21.987   3.635   0.461  -0.872  H     VAL  47  
3XI  H4   H4   H  0  1  N  N  N  -21.348  16.080  -23.553   2.755  -0.634   1.688  HA    VAL  48  
3XI  H27  H27  H  0  1  N  N  N  -19.671  18.582  -23.314   1.571   1.501   2.300  HB    VAL  49  
3XI  H5   H5   H  0  1  N  N  N  -19.973  17.764  -21.005   4.590   1.822   2.020  HG11  VAL  50  
3XI  H6   H6   H  0  1  N  N  N  -20.869  19.290  -21.313   3.541   2.580   3.241  HG12  VAL  51  
3XI  H7   H7   H  0  1  N  N  N  -21.751  17.726  -21.260   3.805   0.820   3.263  HG13  VAL  52  
3XI  H28  H28  H  0  1  N  N  N  -21.852  19.711  -23.597   1.567   2.508   0.034  HG21  VAL  53  
3XI  H29  H29  H  0  1  N  N  N  -21.483  18.581  -24.943   2.336   3.595   1.215  HG22  VAL  54  
3XI  H30  H30  H  0  1  N  N  N  -22.660  18.109  -23.671   3.341   2.647   0.093  HG23  VAL  55  
3XI  H42  H42  H  0  1  N  N  N  -21.110  15.734  -25.917   0.234  -0.627   1.755  H2    LEU  56  
3XI  H20  H20  H  0  1  N  N  N  -18.330  15.760  -26.892  -1.019  -0.228  -0.853  HA    LEU  57  
3XI  H21  H21  H  0  1  N  N  N  -19.539  15.273  -29.119  -0.626  -3.001   0.358  HB2   LEU  58  
3XI  H22  H22  H  0  1  N  N  N  -21.045  15.172  -28.147  -1.717  -2.637  -1.000  HB3   LEU  59  
3XI  H23  H23  H  0  1  N  N  N  -18.657  13.598  -27.228   1.279  -2.059  -0.982  HG    LEU  60  
3XI  H1   H1   H  0  1  N  N  N  -20.774  13.638  -25.935  -0.311  -4.281  -2.342  HD11  LEU  61  
3XI  H2   H2   H  0  1  N  N  N  -21.646  12.977  -27.360   1.429  -3.971  -2.553  HD12  LEU  62  
3XI  H3   H3   H  0  1  N  N  N  -20.383  11.994  -26.544   0.804  -4.492  -0.970  HD13  LEU  63  
3XI  H24  H24  H  0  1  N  N  N  -19.241  11.713  -28.724  -0.823  -1.989  -3.194  HD21  LEU  64  
3XI  H25  H25  H  0  1  N  N  N  -20.424  12.762  -29.576  -0.073  -0.567  -2.430  HD22  LEU  65  
3XI  H26  H26  H  0  1  N  N  N  -18.671  13.147  -29.643   0.917  -1.679  -3.405  HD23  LEU  66  
3XI  H37  H37  H  0  1  N  N  N  -18.556  22.801  -26.332  -5.524   3.968   0.662  H1    ELF  67  
3XI  H38  H38  H  0  1  N  N  N  -20.106  22.405  -25.514  -4.920   3.221  -0.838  H2    ELF  68  
3XI  H19  H19  H  0  1  N  N  N  -19.233  19.857  -28.529  -4.444  -0.118   1.890  H3    ELF  69  
3XI  H35  H35  H  0  1  N  N  N  -19.454  20.720  -27.088  -4.641   1.757   1.216  H4    ELF  70  
3XI  H36  H36  H  0  1  N  N  N  -19.487  20.109  -25.400  -6.418   1.693   1.343  H5    ELF  71  
3XI  H16  H16  H  0  1  N  N  N  -16.236  19.962  -27.936  -5.881  -1.436  -0.457  H6    ELF  72  
3XI  H17  H17  H  0  1  N  N  N  -17.338  21.365  -28.146  -6.691  -0.632   0.909  H7    ELF  73  
3XI  H18  H18  H  0  1  N  N  N  -17.524  18.562  -30.590  -5.634  -2.320   2.607  H8    ELF  74  
3XI  H34  H34  H  0  1  N  N  N  -17.589  19.221  -25.952  -4.676   0.702  -0.953  H9    ELF  75  
3XI  H39  H39  H  0  1  N  N  N  -18.594  23.240  -23.881  -7.808   3.397   0.115  H10   ELF  76  
3XI  H40  H40  H  0  1  N  N  N  -18.782  21.472  -23.625  -7.097   4.165  -1.322  H11   ELF  77  
3XI  H41  H41  H  0  1  N  N  N  -17.291  17.618  -28.039  -3.459  -1.339  -0.578  H14   ELF  78  
3XI  H44  H44  H  0  1  N  N  N  -16.220  22.583  -23.859  -8.089   2.171  -2.128  H15   ELF  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3XI  O01  C02  DOUB  N  N   1  
3XI  C02  C03  SING  N  N   2  
3XI  C09  C08  SING  N  N   3  
3XI  C03  N04  SING  N  N   4  
3XI  C03  C28  SING  N  N   5  
3XI  C07  C08  SING  N  N   6  
3XI  C07  C06  SING  N  N   7  
3XI  N04  C05  SING  N  N   8  
3XI  C28  C29  SING  N  N   9  
3XI  O27  C05  DOUB  N  N  10  
3XI  C08  C10  SING  N  N  11  
3XI  C05  C06  SING  N  N  12  
3XI  C06  N11  SING  N  N  13  
3XI  C29  C30  SING  N  N  14  
3XI  C29  C34  SING  N  N  15  
3XI  C30  C31  SING  N  N  16  
3XI  N11  C12  SING  N  N  17  
3XI  O35  C34  DOUB  N  N  18  
3XI  C31  C32  SING  N  N  19  
3XI  C34  N33  SING  N  N  20  
3XI  C12  O26  DOUB  N  N  21  
3XI  C12  C13  SING  N  N  22  
3XI  N33  C32  SING  N  N  23  
3XI  C16  C14  SING  N  N  24  
3XI  C13  C14  SING  N  N  25  
3XI  C13  N17  SING  N  N  26  
3XI  C14  C15  SING  N  N  27  
3XI  N17  C18  SING  N  N  28  
3XI  O25  C18  DOUB  N  N  29  
3XI  C18  C19  SING  N  N  30  
3XI  C20  C19  SING  N  N  31  
3XI  C20  C21  SING  N  N  32  
3XI  C19  C24  SING  N  N  33  
3XI  C21  C22  SING  N  N  34  
3XI  C24  C23  SING  N  N  35  
3XI  C22  C23  SING  N  N  36  
3XI  C10  H1   SING  N  N  37  
3XI  C10  H2   SING  N  N  38  
3XI  C10  H3   SING  N  N  39  
3XI  C13  H4   SING  N  N  40  
3XI  C15  H5   SING  N  N  41  
3XI  C15  H6   SING  N  N  42  
3XI  C15  H7   SING  N  N  43  
3XI  C20  H8   SING  N  N  44  
3XI  C20  H9   SING  N  N  45  
3XI  C21  H10  SING  N  N  46  
3XI  C21  H11  SING  N  N  47  
3XI  C22  H12  SING  N  N  48  
3XI  C22  H13  SING  N  N  49  
3XI  C24  H14  SING  N  N  50  
3XI  C24  H15  SING  N  N  51  
3XI  C28  H16  SING  N  N  52  
3XI  C28  H17  SING  N  N  53  
3XI  C02  H18  SING  N  N  54  
3XI  C03  H19  SING  N  N  55  
3XI  C06  H20  SING  N  N  56  
3XI  C07  H21  SING  N  N  57  
3XI  C07  H22  SING  N  N  58  
3XI  C08  H23  SING  N  N  59  
3XI  C09  H24  SING  N  N  60  
3XI  C09  H25  SING  N  N  61  
3XI  C09  H26  SING  N  N  62  
3XI  C14  H27  SING  N  N  63  
3XI  C16  H28  SING  N  N  64  
3XI  C16  H29  SING  N  N  65  
3XI  C16  H30  SING  N  N  66  
3XI  C19  H31  SING  N  N  67  
3XI  C23  H32  SING  N  N  68  
3XI  C23  H33  SING  N  N  69  
3XI  C29  H34  SING  N  N  70  
3XI  C30  H35  SING  N  N  71  
3XI  C30  H36  SING  N  N  72  
3XI  C31  H37  SING  N  N  73  
3XI  C31  H38  SING  N  N  74  
3XI  C32  H39  SING  N  N  75  
3XI  C32  H40  SING  N  N  76  
3XI  N04  H41  SING  N  N  77  
3XI  N11  H42  SING  N  N  78  
3XI  N17  H43  SING  N  N  79  
3XI  N33  H44  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3XI  InChI             InChI                 1.03   "InChI=1S/C26H44N4O5/c1-16(2)13-21(25(34)28-20(15-31)14-19-11-8-12-27-23(19)32)29-26(35)22(17(3)4)30-24(33)18-9-6-5-7-10-18/h15-22H,5-14H2,1-4H3,(H,27,32)(H,28,34)(H,29,35)(H,30,33)/t19-,20-,21-,22-/m0/s1"  
3XI  InChIKey          InChI                 1.03   LOOFBLJETYWAIL-CMOCDZPBSA-N  
3XI  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)C1CCCCC1)C(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"  
3XI  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)[CH](NC(=O)C1CCCCC1)C(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"  
3XI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)C2CCCCC2"  
3XI  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)C2CCCCC2"  
#
_pdbx_chem_comp_identifier.comp_id          3XI
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]cyclohexanecarboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3XI  "Create component"          2022-02-01  PDBJ  
3XI  "Modify component comp_id"  2022-02-02  PDBJ  
3XI  "Initial release"           2022-04-13  RCSB  
##
