data_LPI
# 
_chem_comp.id                                    LPI 
_chem_comp.name                                  "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-methionine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H21 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-21 
_chem_comp.pdbx_modified_date                    2017-10-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        380.354 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LPI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TSU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LPI OP1   O1  O 0 1 N N N 110.222 32.690 195.254 4.623  -1.714 0.935  OP1   LPI 1  
LPI P     P1  P 0 1 N N N 108.824 32.148 195.081 4.440  -1.117 -0.408 P     LPI 2  
LPI OP3   O2  O 0 1 N N N 107.792 33.093 195.658 5.861  -0.607 -0.966 OP3   LPI 3  
LPI OP2   O3  O 0 1 N N N 108.709 30.794 195.733 3.835  -2.224 -1.409 OP2   LPI 4  
LPI OP4   O4  O 0 1 N N N 108.523 32.015 193.507 3.424  0.128  -0.308 OP4   LPI 5  
LPI "C5'" C1  C 0 1 N N N 109.534 31.428 192.707 2.114  0.021  0.252  "C5'" LPI 6  
LPI C5    C2  C 0 1 Y N N 109.575 31.993 191.309 1.430  1.362  0.192  C5    LPI 7  
LPI C6    C3  C 0 1 Y N N 108.817 31.325 190.355 2.082  2.455  -0.347 C6    LPI 8  
LPI N1    N1  N 0 1 Y N N 108.788 31.724 189.082 1.494  3.634  -0.404 N1    LPI 9  
LPI C2    C4  C 0 1 Y N N 109.510 32.793 188.688 0.269  3.821  0.046  C2    LPI 10 
LPI "C2'" C5  C 0 1 N N N 109.472 33.240 187.245 -0.358 5.189  -0.043 "C2'" LPI 11 
LPI C3    C6  C 0 1 Y N N 110.287 33.485 189.602 -0.449 2.772  0.601  C3    LPI 12 
LPI O3    O5  O 0 1 N N N 111.004 34.554 189.177 -1.712 2.969  1.064  O3    LPI 13 
LPI C4    C7  C 0 1 Y N N 110.342 33.105 190.935 0.139  1.514  0.673  C4    LPI 14 
LPI "C4'" C8  C 0 1 N N N 111.185 33.937 191.857 -0.605 0.346  1.267  "C4'" LPI 15 
LPI C1    C9  C 0 1 N N S 113.531 34.729 192.241 -2.098 -1.491 0.755  C1    LPI 16 
LPI C8    C10 C 0 1 N N N 113.977 33.955 193.493 -3.299 -1.794 -0.142 C8    LPI 17 
LPI C9    C11 C 0 1 N N N 115.457 34.109 193.838 -4.280 -0.621 -0.095 C9    LPI 18 
LPI S10   S1  S 0 1 N N N 116.105 32.677 194.636 -5.705 -0.980 -1.158 S10   LPI 19 
LPI C11   C12 C 0 1 N N N 117.860 32.719 194.480 -6.736 0.501  -0.973 C11   LPI 20 
LPI C7    C13 C 0 1 N N N 114.676 35.199 191.367 -1.192 -2.694 0.805  C7    LPI 21 
LPI O9    O6  O 0 1 N N N 115.375 36.166 191.725 -1.657 -3.864 1.270  O9    LPI 22 
LPI O8    O7  O 0 1 N N N 114.895 34.625 190.277 -0.048 -2.606 0.427  O8    LPI 23 
LPI N3    N2  N 0 1 N N N 112.605 33.880 191.440 -1.358 -0.344 0.211  N3    LPI 24 
LPI H1    H1  H 0 1 N N N 108.228 33.854 196.022 6.523  -1.306 -1.053 H1    LPI 25 
LPI H2    H2  H 0 1 N N N 109.543 30.557 196.121 3.689  -1.902 -2.309 H2    LPI 26 
LPI H3    H3  H 0 1 N N N 109.348 30.346 192.643 1.535  -0.707 -0.316 H3    LPI 27 
LPI H4    H4  H 0 1 N N N 110.508 31.605 193.186 2.187  -0.304 1.290  H4    LPI 28 
LPI H5    H5  H 0 1 N N N 108.238 30.463 190.651 3.087  2.343  -0.726 H5    LPI 29 
LPI H6    H6  H 0 1 N N N 108.807 32.577 186.673 -0.885 5.285  -0.992 H6    LPI 30 
LPI H7    H7  H 0 1 N N N 109.096 34.272 187.191 -1.061 5.320  0.779  H7    LPI 31 
LPI H8    H8  H 0 1 N N N 110.486 33.197 186.821 0.420  5.950  0.019  H8    LPI 32 
LPI H9    H9  H 0 1 N N N 111.484 34.925 189.908 -2.401 2.826  0.400  H9    LPI 33 
LPI H10   H10 H 0 1 N N N 110.838 34.980 191.825 0.106  -0.347 1.718  H10   LPI 34 
LPI H11   H11 H 0 1 N N N 111.091 33.551 192.883 -1.295 0.705  2.030  H11   LPI 35 
LPI H12   H12 H 0 1 N N N 112.977 35.617 192.579 -2.445 -1.255 1.760  H12   LPI 36 
LPI H13   H13 H 0 1 N N N 113.386 34.314 194.348 -2.960 -1.942 -1.167 H13   LPI 37 
LPI H14   H14 H 0 1 N N N 113.772 32.887 193.328 -3.797 -2.698 0.210  H14   LPI 38 
LPI H15   H15 H 0 1 N N N 116.021 34.284 192.910 -4.620 -0.472 0.930  H15   LPI 39 
LPI H16   H16 H 0 1 N N N 115.577 34.973 194.508 -3.783 0.283  -0.447 H16   LPI 40 
LPI H17   H17 H 0 1 N N N 118.293 31.835 194.970 -7.637 0.394  -1.579 H17   LPI 41 
LPI H18   H18 H 0 1 N N N 118.133 32.718 193.415 -7.015 0.621  0.074  H18   LPI 42 
LPI H19   H19 H 0 1 N N N 118.249 33.630 194.958 -6.178 1.376  -1.304 H19   LPI 43 
LPI H20   H20 H 0 1 N N N 116.031 36.345 191.062 -1.038 -4.608 1.284  H20   LPI 44 
LPI H21   H21 H 0 1 N N N 112.912 32.931 191.514 -1.978 0.293  -0.266 H21   LPI 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LPI "C2'" C2    SING N N 1  
LPI C2    N1    DOUB Y N 2  
LPI C2    C3    SING Y N 3  
LPI N1    C6    SING Y N 4  
LPI O3    C3    SING N N 5  
LPI C3    C4    DOUB Y N 6  
LPI O8    C7    DOUB N N 7  
LPI C6    C5    DOUB Y N 8  
LPI C4    C5    SING Y N 9  
LPI C4    "C4'" SING N N 10 
LPI C5    "C5'" SING N N 11 
LPI C7    O9    SING N N 12 
LPI C7    C1    SING N N 13 
LPI N3    "C4'" SING N N 14 
LPI N3    C1    SING N N 15 
LPI C1    C8    SING N N 16 
LPI "C5'" OP4   SING N N 17 
LPI C8    C9    SING N N 18 
LPI OP4   P     SING N N 19 
LPI C9    S10   SING N N 20 
LPI C11   S10   SING N N 21 
LPI P     OP1   DOUB N N 22 
LPI P     OP3   SING N N 23 
LPI P     OP2   SING N N 24 
LPI OP3   H1    SING N N 25 
LPI OP2   H2    SING N N 26 
LPI "C5'" H3    SING N N 27 
LPI "C5'" H4    SING N N 28 
LPI C6    H5    SING N N 29 
LPI "C2'" H6    SING N N 30 
LPI "C2'" H7    SING N N 31 
LPI "C2'" H8    SING N N 32 
LPI O3    H9    SING N N 33 
LPI "C4'" H10   SING N N 34 
LPI "C4'" H11   SING N N 35 
LPI C1    H12   SING N N 36 
LPI C8    H13   SING N N 37 
LPI C8    H14   SING N N 38 
LPI C9    H15   SING N N 39 
LPI C9    H16   SING N N 40 
LPI C11   H17   SING N N 41 
LPI C11   H18   SING N N 42 
LPI C11   H19   SING N N 43 
LPI O9    H20   SING N N 44 
LPI N3    H21   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LPI SMILES           ACDLabs              12.01 "O=P(O)(O)OCc1cnc(c(c1CNC(CCSC)C(O)=O)O)C"                                                                                                               
LPI InChI            InChI                1.03  "InChI=1S/C13H21N2O7PS/c1-8-12(16)10(6-15-11(13(17)18)3-4-24-2)9(5-14-8)7-22-23(19,20)21/h5,11,15-16H,3-4,6-7H2,1-2H3,(H,17,18)(H2,19,20,21)/t11-/m0/s1" 
LPI InChIKey         InChI                1.03  TZGVKKRKUOYYOG-NSHDSACASA-N                                                                                                                              
LPI SMILES_CANONICAL CACTVS               3.385 "CSCC[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                         
LPI SMILES           CACTVS               3.385 "CSCC[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                                          
LPI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCSC)C(=O)O)O"                                                                                                        
LPI SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CCSC)C(=O)O)O"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LPI "SYSTEMATIC NAME" ACDLabs              12.01 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-methionine"                               
LPI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-methylsulfanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LPI "Create component" 2016-11-21 RCSB 
LPI "Modify formula"   2016-11-21 RCSB 
LPI "Initial release"  2017-10-11 RCSB 
# 
