data_B3J
#

_chem_comp.id                                   B3J
_chem_comp.name                                 "(1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H48 N4 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-31
_chem_comp.pdbx_modified_date                   2020-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       668.799
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B3J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       TESTID
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B3J  C11  C1   C  0  1  N  N  S  -20.978  -1.336   5.483  -4.432  -0.082  -0.332  C11  B3J   1  
B3J  C12  C2   C  0  1  N  N  N  -20.279  -2.145   6.585  -5.431  -0.599   0.705  C12  B3J   2  
B3J  C13  C3   C  0  1  N  N  S  -20.758  -3.608   6.640  -4.721  -1.555   1.666  C13  B3J   3  
B3J  C14  C4   C  0  1  N  N  N  -20.143  -4.342   7.767  -5.688  -2.076   2.706  C14  B3J   4  
B3J  C24  C5   C  0  1  N  N  N  -22.147  -7.819   4.075   4.021   2.105   1.383  C24  B3J   5  
B3J  C25  C6   C  0  1  Y  N  N  -23.315  -7.261   4.892   4.300   3.321   0.539  C25  B3J   6  
B3J  C16  C7   C  0  1  N  N  N  -22.494  -4.770   7.937  -4.475  -3.919   1.982  C16  B3J   7  
B3J  C02  C8   C  0  1  N  N  N  -21.552  -5.237   2.491   1.408   1.156   0.412  C02  B3J   8  
B3J  C04  C9   C  0  1  N  N  S  -20.934  -2.872   1.951  -1.013   1.413   0.522  C04  B3J   9  
B3J  C05  C10  C  0  1  N  N  N  -21.139  -1.856   0.833  -1.386   2.894   0.613  C05  B3J  10  
B3J  C06  C11  C  0  1  N  N  N  -20.500  -2.325  -0.476  -0.339   3.632   1.450  C06  B3J  11  
B3J  C07  C12  C  0  1  N  N  N  -20.827  -1.405  -1.654  -0.627   5.135   1.416  C07  B3J  12  
B3J  C08  C13  C  0  1  N  N  N  -18.981  -2.479  -0.364  -0.399   3.135   2.896  C08  B3J  13  
B3J  C09  C14  C  0  1  N  N  N  -21.501  -2.333   3.257  -2.116   0.659  -0.175  C09  B3J  14  
B3J  C17  C15  C  0  1  N  N  N  -22.257  -3.644   6.893  -4.249  -2.823   0.917  C17  B3J  15  
B3J  C19  C16  C  0  1  N  N  S  -20.624   0.146   5.451  -5.149   0.851  -1.310  C19  B3J  16  
B3J  C26  C18  C  0  1  Y  N  N  -23.800  -5.973   4.717   5.600   3.643   0.197  C26  B3J  17  
B3J  C27  C19  C  0  1  Y  N  N  -24.846  -5.511   5.499   5.856   4.759  -0.577  C27  B3J  18  
B3J  C28  C20  C  0  1  Y  N  N  -25.408  -6.336   6.457   4.811   5.553  -1.011  C28  B3J  19  
B3J  C29  C21  C  0  1  Y  N  N  -24.921  -7.616   6.635   3.510   5.231  -0.671  C29  B3J  20  
B3J  C30  C22  C  0  1  Y  N  N  -23.871  -8.076   5.863   3.254   4.113   0.100  C30  B3J  21  
B3J  N03  N1   N  0  1  N  N  N  -21.616  -4.097   1.614   0.232   1.269  -0.237  N03  B3J  22  
B3J  N10  N2   N  0  1  N  N  N  -20.536  -1.865   4.221  -3.359   0.650   0.345  N10  B3J  23  
B3J  N15  N3   N  0  1  N  N  N  -21.216  -5.046   8.541  -5.532  -3.402   2.858  N15  B3J  24  
B3J  O01  O1   O  0  1  N  N  N  -20.724  -5.320   3.353   1.429   1.106   1.626  O01  B3J  25  
B3J  O18  O2   O  0  1  N  N  N  -18.996  -4.418   8.036  -6.487  -1.396   3.314  O18  B3J  26  
B3J  O20  O3   O  0  1  N  N  N  -21.104   0.739   6.637  -4.192   1.442  -2.192  O20  B3J  27  
B3J  O21  O4   O  0  1  N  N  N  -22.664  -2.298   3.492  -1.885   0.060  -1.204  O21  B3J  28  
B3J  O22  O5   O  0  1  N  N  N  -22.567  -6.183   2.281   2.559   1.100  -0.285  O22  B3J  29  
B3J  S    S1   S  0  1  N  N  N  -18.827   0.346   5.231  -6.357  -0.097  -2.276  S    B3J  30  
B3J  H1   H1   H  0  1  N  N  N  -22.067  -1.448   5.588  -4.008  -0.925  -0.879  H1   B3J  31  
B3J  H2   H2   H  0  1  N  N  N  -19.196  -2.136   6.395  -5.840   0.242   1.266  H2   B3J  32  
B3J  H3   H3   H  0  1  N  N  N  -20.485  -1.670   7.555  -6.240  -1.126   0.199  H3   B3J  33  
B3J  H4   H4   H  0  1  N  N  N  -20.529  -4.107   5.687  -3.876  -1.057   2.142  H4   B3J  34  
B3J  H5   H5   H  0  1  N  N  N  -22.570  -7.921   3.065   4.876   1.908   2.029  H5   B3J  35  
B3J  H6   H6   H  0  1  N  N  N  -21.988  -8.817   4.509   3.136   2.282   1.995  H6   B3J  36  
B3J  H7   H7   H  0  1  N  N  N  -23.211  -4.434   8.701  -4.798  -4.846   1.507  H7   B3J  37  
B3J  H8   H8   H  0  1  N  N  N  -22.882  -5.672   7.441  -3.561  -4.087   2.552  H8   B3J  38  
B3J  H9   H9   H  0  1  N  N  N  -19.857  -3.058   2.075  -0.875   1.010   1.525  H9   B3J  39  
B3J  H10  H10  H  0  1  N  N  N  -20.683  -0.900   1.131  -1.419   3.323  -0.388  H10  B3J  40  
B3J  H11  H11  H  0  1  N  N  N  -22.218  -1.714   0.673  -2.364   2.994   1.084  H11  B3J  41  
B3J  H12  H12  H  0  1  N  N  N  -20.915  -3.317  -0.708   0.653   3.443   1.041  H12  B3J  42  
B3J  H13  H13  H  0  1  N  N  N  -21.918  -1.291  -1.739   0.119   5.661   2.012  H13  B3J  43  
B3J  H14  H14  H  0  1  N  N  N  -20.367  -0.420  -1.488  -0.584   5.489   0.386  H14  B3J  44  
B3J  H15  H15  H  0  1  N  N  N  -20.431  -1.843  -2.582  -1.619   5.324   1.825  H15  B3J  45  
B3J  H16  H16  H  0  1  N  N  N  -18.740  -3.140   0.482  -1.360   3.405   3.334  H16  B3J  46  
B3J  H17  H17  H  0  1  N  N  N  -18.587  -2.915  -1.294  -0.284   2.051   2.912  H17  B3J  47  
B3J  H18  H18  H  0  1  N  N  N  -18.524  -1.492  -0.200   0.405   3.594   3.471  H18  B3J  48  
B3J  H19  H19  H  0  1  N  N  N  -22.600  -2.677   7.290  -4.862  -3.005   0.034  H19  B3J  49  
B3J  H20  H20  H  0  1  N  N  N  -22.796  -3.869   5.961  -3.195  -2.749   0.650  H20  B3J  50  
B3J  H21  H21  H  0  1  N  N  N  -21.089   0.609   4.568  -5.663   1.635  -0.753  H21  B3J  51  
B3J  H24  H24  H  0  1  N  N  N  -23.361  -5.329   3.969   6.416   3.023   0.536  H24  B3J  52  
B3J  H25  H25  H  0  1  N  N  N  -25.222  -4.508   5.361   6.872   5.011  -0.843  H25  B3J  53  
B3J  H26  H26  H  0  1  N  N  N  -26.226  -5.979   7.065   5.010   6.425  -1.616  H26  B3J  54  
B3J  H27  H27  H  0  1  N  N  N  -25.363  -8.260   7.381   2.694   5.852  -1.010  H27  B3J  55  
B3J  H28  H28  H  0  1  N  N  N  -23.484  -9.072   6.017   2.238   3.859   0.363  H28  B3J  56  
B3J  H29  H29  H  0  1  N  N  N  -22.138  -4.155   0.763   0.210   1.254  -1.207  H29  B3J  57  
B3J  H30  H30  H  0  1  N  N  N  -19.559  -1.908   4.012  -3.544   1.129   1.168  H30  B3J  58  
B3J  H31  H31  H  0  1  N  N  N  -21.068  -5.617   9.349  -6.052  -3.948   3.469  H31  B3J  59  
B3J  H32  H32  H  0  1  N  N  N  -20.546   1.471   6.874  -3.514   1.965  -1.743  H32  B3J  60  
B3J  O2   O6   O  0  1  N  N  N        ?       ?       ?  -5.786  -1.317  -2.728  O2   B3J  61  
B3J  O3   O7   O  0  1  N  N  N        ?       ?       ?  -7.403  -0.527  -1.258  O3   B3J  62  
B3J  O1   O8   O  0  1  N  N  N  -18.664   2.084   5.565  -7.063   0.756  -3.166  O1   B3J  63  
B3J  C1   C23  C  0  1  N  N  N        ?       ?       ?   4.959   0.741  -0.488  C1   B3J  64  
B3J  C2   C24  C  0  1  N  N  N        ?       ?       ?   4.698  -0.448  -1.419  C2   B3J  65  
B3J  N1   N4   N  0  1  N  N  N        ?       ?       ?   4.424  -1.637  -0.602  N1   B3J  66  
B3J  C4   C25  C  0  1  N  N  N        ?       ?       ?   3.369  -1.566   0.419  C4   B3J  67  
B3J  C5   C26  C  0  1  N  N  N        ?       ?       ?   3.645  -0.365   1.329  C5   B3J  68  
B3J  C23  C27  C  0  1  N  N  N        ?       ?       ?   3.780   0.898   0.474  C6   B3J  69  
B3J  H33  H33  H  0  1  N  Y  N        ?       ?       ?  -8.125  -1.050  -1.633  H33  B3J  70  
B3J  H34  H34  H  0  1  N  N  N        ?       ?       ?   5.872   0.564   0.080  H34  B3J  71  
B3J  H35  H35  H  0  1  N  N  N        ?       ?       ?   5.069   1.649  -1.081  H35  B3J  72  
B3J  H36  H36  H  0  1  N  N  N        ?       ?       ?   3.837  -0.233  -2.053  H36  B3J  73  
B3J  H37  H37  H  0  1  N  N  N        ?       ?       ?   5.576  -0.625  -2.040  H37  B3J  74  
B3J  H40  H40  H  0  1  N  N  N        ?       ?       ?   2.400  -1.443  -0.065  H40  B3J  75  
B3J  H41  H41  H  0  1  N  N  N        ?       ?       ?   3.371  -2.481   1.011  H41  B3J  76  
B3J  H42  H42  H  0  1  N  N  N        ?       ?       ?   2.820  -0.243   2.030  H42  B3J  77  
B3J  H43  H43  H  0  1  N  N  N        ?       ?       ?   4.570  -0.531   1.880  H43  B3J  78  
B3J  C3   C28  C  0  1  N  N  N        ?       ?       ?   5.126  -2.773  -0.785  C3   B3J  79  
B3J  O5   O9   O  0  1  N  N  N        ?       ?       ?   4.864  -3.856  -0.029  O5   B3J  80  
B3J  C8   C29  C  0  1  N  N  N        ?       ?       ?   5.659  -5.044  -0.282  C8   B3J  81  
B3J  C9   C30  C  0  1  N  N  N        ?       ?       ?   7.138  -4.727  -0.048  C9   B3J  82  
B3J  C10  C31  C  0  1  N  N  N        ?       ?       ?   5.221  -6.162   0.667  C10  B3J  83  
B3J  C15  C32  C  0  1  N  N  N        ?       ?       ?   5.457  -5.495  -1.729  C15  B3J  84  
B3J  O4   O10  O  0  1  N  N  N        ?       ?       ?   5.995  -2.820  -1.633  O4   B3J  85  
B3J  H22  H22  H  0  1  N  N  N        ?       ?       ?   7.282  -4.406   0.984  H22  B3J  86  
B3J  H23  H23  H  0  1  N  N  N        ?       ?       ?   7.735  -5.619  -0.237  H23  B3J  87  
B3J  H38  H38  H  0  1  N  N  N        ?       ?       ?   7.450  -3.931  -0.724  H38  B3J  88  
B3J  H39  H39  H  0  1  N  N  N        ?       ?       ?   4.168  -6.388   0.501  H39  B3J  89  
B3J  H44  H44  H  0  1  N  N  N        ?       ?       ?   5.818  -7.054   0.477  H44  B3J  90  
B3J  H45  H45  H  0  1  N  N  N        ?       ?       ?   5.365  -5.841   1.698  H45  B3J  91  
B3J  H46  H46  H  0  1  N  N  N        ?       ?       ?   5.769  -4.699  -2.405  H46  B3J  92  
B3J  H47  H47  H  0  1  N  N  N        ?       ?       ?   6.054  -6.387  -1.919  H47  B3J  93  
B3J  H48  H48  H  0  1  N  N  N        ?       ?       ?   4.404  -5.721  -1.896  H48  B3J  94  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B3J  C07  C06  SING  N  N   1  
B3J  C06  C08  SING  N  N   2  
B3J  C06  C05  SING  N  N   3  
B3J  C05  C04  SING  N  N   4  
B3J  N03  C04  SING  N  N   5  
B3J  N03  C02  SING  N  N   6  
B3J  C04  C09  SING  N  N   7  
B3J  O22  C02  SING  N  N   8  
B3J  O22  C23  SING  N  N   9  
B3J  C02  O01  DOUB  N  N  10  
B3J  C23  C24  SING  N  N  11  
B3J  C09  O21  DOUB  N  N  12  
B3J  C09  N10  SING  N  N  13  
B3J  C24  C25  SING  N  N  14  
B3J  N10  C11  SING  N  N  15  
B3J  C26  C25  DOUB  Y  N  16  
B3J  C26  C27  SING  Y  N  17  
B3J  C25  C30  SING  Y  N  18  
B3J  S    C19  SING  N  N  19  
B3J  C19  C11  SING  N  N  20  
B3J  C19  O20  SING  N  N  21  
B3J  C11  C12  SING  N  N  22  
B3J  C27  C28  DOUB  Y  N  23  
B3J  C30  C29  DOUB  Y  N  24  
B3J  C28  C29  SING  Y  N  25  
B3J  C12  C13  SING  N  N  26  
B3J  C13  C17  SING  N  N  27  
B3J  C13  C14  SING  N  N  28  
B3J  C17  C16  SING  N  N  29  
B3J  C14  O18  DOUB  N  N  30  
B3J  C14  N15  SING  N  N  31  
B3J  C16  N15  SING  N  N  32  
B3J  C11  H1   SING  N  N  33  
B3J  C12  H2   SING  N  N  34  
B3J  C12  H3   SING  N  N  35  
B3J  C13  H4   SING  N  N  36  
B3J  C24  H5   SING  N  N  37  
B3J  C24  H6   SING  N  N  38  
B3J  C16  H7   SING  N  N  39  
B3J  C16  H8   SING  N  N  40  
B3J  C04  H9   SING  N  N  41  
B3J  C05  H10  SING  N  N  42  
B3J  C05  H11  SING  N  N  43  
B3J  C06  H12  SING  N  N  44  
B3J  C07  H13  SING  N  N  45  
B3J  C07  H14  SING  N  N  46  
B3J  C07  H15  SING  N  N  47  
B3J  C08  H16  SING  N  N  48  
B3J  C08  H17  SING  N  N  49  
B3J  C08  H18  SING  N  N  50  
B3J  C17  H19  SING  N  N  51  
B3J  C17  H20  SING  N  N  52  
B3J  C19  H21  SING  N  N  53  
B3J  C26  H24  SING  N  N  54  
B3J  C27  H25  SING  N  N  55  
B3J  C28  H26  SING  N  N  56  
B3J  C29  H27  SING  N  N  57  
B3J  C30  H28  SING  N  N  58  
B3J  N03  H29  SING  N  N  59  
B3J  N10  H30  SING  N  N  60  
B3J  N15  H31  SING  N  N  61  
B3J  O20  H32  SING  N  N  62  
B3J  S    O2   DOUB  N  N  63  
B3J  S    O3   SING  N  N  64  
B3J  S    O1   DOUB  N  N  65  
B3J  C23  C1   SING  N  N  66  
B3J  C1   C2   SING  N  N  67  
B3J  C2   N1   SING  N  N  68  
B3J  N1   C4   SING  N  N  69  
B3J  C4   C5   SING  N  N  70  
B3J  C5   C23  SING  N  N  71  
B3J  O3   H33  SING  N  N  72  
B3J  C1   H34  SING  N  N  73  
B3J  C1   H35  SING  N  N  74  
B3J  C2   H36  SING  N  N  75  
B3J  C2   H37  SING  N  N  76  
B3J  C4   H40  SING  N  N  77  
B3J  C4   H41  SING  N  N  78  
B3J  C5   H42  SING  N  N  79  
B3J  C5   H43  SING  N  N  80  
B3J  N1   C3   SING  N  N  81  
B3J  C3   O5   SING  N  N  82  
B3J  O5   C8   SING  N  N  83  
B3J  C8   C9   SING  N  N  84  
B3J  C8   C10  SING  N  N  85  
B3J  C8   C15  SING  N  N  86  
B3J  C3   O4   DOUB  N  N  87  
B3J  C9   H22  SING  N  N  88  
B3J  C9   H23  SING  N  N  89  
B3J  C9   H38  SING  N  N  90  
B3J  C10  H39  SING  N  N  91  
B3J  C10  H44  SING  N  N  92  
B3J  C10  H45  SING  N  N  93  
B3J  C15  H46  SING  N  N  94  
B3J  C15  H47  SING  N  N  95  
B3J  C15  H48  SING  N  N  96  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B3J  SMILES            ACDLabs               12.01  "C(CC1CCNC1=O)(C(O)S(=O)(O)=O)NC(C(CC(C)C)NC(=O)OC3(Cc2ccccc2)CCN(CC3)C(OC(C)(C)C)=O)=O"  
B3J  InChI             InChI                 1.03   "InChI=1S/C31H48N4O10S/c1-20(2)17-23(26(37)33-24(27(38)46(41,42)43)18-22-11-14-32-25(22)36)34-28(39)44-31(19-21-9-7-6-8-10-21)12-15-35(16-13-31)29(40)45-30(3,4)5/h6-10,20,22-24,27,38H,11-19H2,1-5H3,(H,32,36)(H,33,37)(H,34,39)(H,41,42,43)/t22-,23-,24-,27-/m0/s1"  
B3J  InChIKey          InChI                 1.03   PJEUBFINPIVQHS-TTZMFTMZSA-N  
B3J  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC1(CCN(CC1)C(=O)OC(C)(C)C)Cc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
B3J  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC1(CCN(CC1)C(=O)OC(C)(C)C)Cc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
B3J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OC2(CCN(CC2)C(=O)OC(C)(C)C)Cc3ccccc3"  
B3J  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2(CCN(CC2)C(=O)OC(C)(C)C)Cc3ccccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B3J  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
B3J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{S},2~{S})-2-[[(2~{S})-4-methyl-2-[[1-[(2-methylpropan-2-yl)oxycarbonyl]-4-(phenylmethyl)piperidin-4-yl]oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B3J  "Create component"    2017-07-31  RCSB  
B3J  "Other modification"  2017-07-31  RCSB  
B3J  "Initial release"     2018-04-04  RCSB  
B3J  "Other modification"  2020-05-27  RCSB  
##
