data_VDJ
#

_chem_comp.id                                   VDJ
_chem_comp.name                                 "[4,4-bis(fluoranyl)cyclohexyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H35 F2 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-30
_chem_comp.pdbx_modified_date                   2020-08-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       527.580
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VDJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W2A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VDJ  C11  C1   C  0  1  N  N  S  -12.014   -8.601  -24.486  -0.309   0.384   0.510  C11  VDJ   1  
VDJ  C12  C2   C  0  1  N  N  N  -12.609  -10.020  -24.253  -0.721   1.500   1.472  C12  VDJ   2  
VDJ  C13  C3   C  0  1  N  N  N  -14.134  -10.033  -24.019  -2.016   1.106   2.185  C13  VDJ   3  
VDJ  C14  C4   C  0  1  N  N  N  -14.732  -11.447  -24.068  -1.753  -0.098   3.092  C14  VDJ   4  
VDJ  C15  C5   C  0  1  N  N  N  -14.501   -9.427  -22.664  -2.511   2.282   3.030  C15  VDJ   5  
VDJ  C16  C6   C  0  1  N  N  N  -10.465   -8.639  -24.437  -1.278   0.333  -0.643  C16  VDJ   6  
VDJ  C18  C7   C  0  1  N  N  S   -8.347   -8.256  -23.188  -3.430  -0.302  -1.596  C18  VDJ   7  
VDJ  C19  C8   C  0  1  N  N  N   -7.733   -6.810  -23.074  -4.479  -1.364  -1.264  C19  VDJ   8  
VDJ  C20  C9   C  0  1  N  N  S   -7.815   -6.035  -24.401  -3.793  -2.720  -1.084  C20  VDJ   9  
VDJ  C21  C10  C  0  1  N  N  N   -7.327   -4.596  -24.235  -2.903  -2.704   0.139  C21  VDJ  10  
VDJ  C23  C11  C  0  1  N  N  N   -6.404   -5.339  -26.280  -4.828  -3.841   0.767  C23  VDJ  11  
VDJ  C24  C12  C  0  1  N  N  N   -6.946   -6.571  -25.536  -4.838  -3.818  -0.778  C24  VDJ  12  
VDJ  C26  C13  C  0  1  N  N  R   -7.938   -9.119  -21.961  -4.126   1.027  -1.898  C26  VDJ  13  
VDJ  S    S1   S  0  1  N  Y  N   -8.769   -8.480  -20.492  -4.960   1.626  -0.403  S    VDJ  14  
VDJ  C02  C14  C  0  1  N  N  N  -14.030   -3.295  -31.144   8.425  -0.112  -0.707  C02  VDJ  15  
VDJ  C04  C15  C  0  1  N  N  N  -14.679   -3.970  -29.898   8.267   0.481   0.694  C04  VDJ  16  
VDJ  C05  C16  C  0  1  N  N  N  -13.857   -5.148  -29.376   6.948   0.004   1.305  C05  VDJ  17  
VDJ  C06  C17  C  0  1  N  N  N  -12.331   -4.916  -29.340   5.783   0.461   0.424  C06  VDJ  18  
VDJ  C07  C18  C  0  1  N  N  N  -11.793   -5.354  -27.965   4.464  -0.016   1.034  C07  VDJ  19  
VDJ  C09  C19  C  0  1  N  N  N  -12.097   -6.832  -26.190   2.114   0.188   0.673  C09  VDJ  20  
VDJ  C30  C20  C  0  1  N  N  N  -12.037   -3.459  -29.593   5.941  -0.132  -0.978  C30  VDJ  21  
VDJ  C31  C21  C  0  1  N  N  N  -12.535   -2.968  -30.924   7.260   0.345  -1.588  C31  VDJ  22  
VDJ  F01  F1   F  0  1  N  N  N  -14.167   -4.094  -32.232   9.631   0.324  -1.266  F01  VDJ  23  
VDJ  F03  F2   F  0  1  N  N  N  -14.720   -2.204  -31.522   8.427  -1.509  -0.625  F03  VDJ  24  
VDJ  N10  N1   N  0  1  N  N  N  -12.467   -8.071  -25.778   1.039   0.649   0.003  N10  VDJ  25  
VDJ  N17  N2   N  0  1  N  N  N   -9.800   -8.245  -23.303  -2.529  -0.132  -0.453  N17  VDJ  26  
VDJ  N22  N3   N  0  1  N  N  N   -6.538   -4.248  -25.306  -3.504  -3.343   1.157  N22  VDJ  27  
VDJ  O08  O1   O  0  1  N  N  N  -12.427   -6.511  -27.464   3.354   0.516   0.265  O08  VDJ  28  
VDJ  O25  O2   O  0  1  N  N  N   -7.558   -3.826  -23.317  -1.805  -2.191   0.192  O25  VDJ  29  
VDJ  O27  O3   O  0  1  N  N  N   -8.478  -10.395  -22.251  -3.157   1.988  -2.320  O27  VDJ  30  
VDJ  O28  O4   O  0  1  N  N  N   -9.847   -9.008  -25.430  -0.932   0.709  -1.743  O28  VDJ  31  
VDJ  O29  O5   O  0  1  N  N  N  -11.493   -6.034  -25.477   1.963  -0.524   1.646  O29  VDJ  32  
VDJ  H1   H1   H  0  1  N  N  N  -12.368   -7.943  -23.679  -0.319  -0.571   1.035  H1   VDJ  33  
VDJ  H2   H2   H  0  1  N  N  N  -12.390  -10.636  -25.138   0.067   1.653   2.209  H2   VDJ  34  
VDJ  H3   H3   H  0  1  N  N  N  -12.120  -10.459  -23.371  -0.880   2.422   0.913  H3   VDJ  35  
VDJ  H4   H4   H  0  1  N  N  N  -14.608   -9.430  -24.808  -2.773   0.846   1.446  H4   VDJ  36  
VDJ  H5   H5   H  0  1  N  N  N  -15.817  -11.393  -23.895  -2.690  -0.424   3.543  H5   VDJ  37  
VDJ  H6   H6   H  0  1  N  N  N  -14.540  -11.892  -25.055  -1.332  -0.912   2.501  H6   VDJ  38  
VDJ  H7   H7   H  0  1  N  N  N  -14.267  -12.069  -23.289  -1.051   0.183   3.876  H7   VDJ  39  
VDJ  H8   H8   H  0  1  N  N  N  -15.593   -9.454  -22.533  -2.698   3.140   2.385  H8   VDJ  40  
VDJ  H9   H9   H  0  1  N  N  N  -14.022  -10.007  -21.861  -3.434   2.001   3.538  H9   VDJ  41  
VDJ  H10  H10  H  0  1  N  N  N  -14.152   -8.385  -22.622  -1.753   2.542   3.770  H10  VDJ  42  
VDJ  H11  H11  H  0  1  N  N  N   -7.921   -8.727  -24.086  -2.855  -0.617  -2.467  H11  VDJ  43  
VDJ  H12  H12  H  0  1  N  N  N   -6.677   -6.896  -22.779  -4.994  -1.092  -0.342  H12  VDJ  44  
VDJ  H13  H13  H  0  1  N  N  N   -8.284   -6.251  -22.303  -5.202  -1.428  -2.078  H13  VDJ  45  
VDJ  H14  H14  H  0  1  N  N  N   -8.863   -6.018  -24.734  -3.217  -2.976  -1.973  H14  VDJ  46  
VDJ  H15  H15  H  0  1  N  N  N   -5.351   -5.484  -26.562  -5.608  -3.187   1.158  H15  VDJ  47  
VDJ  H16  H16  H  0  1  N  N  N   -7.000   -5.133  -27.182  -4.971  -4.858   1.130  H16  VDJ  48  
VDJ  H17  H17  H  0  1  N  N  N   -7.547   -7.193  -26.216  -5.821  -3.539  -1.158  H17  VDJ  49  
VDJ  H18  H18  H  0  1  N  N  N   -6.115   -7.168  -25.131  -4.523  -4.780  -1.184  H18  VDJ  50  
VDJ  H19  H19  H  0  1  N  N  N   -6.851   -9.111  -21.790  -4.861   0.880  -2.690  H19  VDJ  51  
VDJ  H21  H21  H  0  1  N  N  N  -14.769   -3.221  -29.098   9.097   0.156   1.322  H21  VDJ  52  
VDJ  H22  H22  H  0  1  N  N  N  -15.680   -4.333  -30.175   8.265   1.569   0.630  H22  VDJ  53  
VDJ  H23  H23  H  0  1  N  N  N  -14.192   -5.371  -28.352   6.950  -1.084   1.369  H23  VDJ  54  
VDJ  H24  H24  H  0  1  N  N  N  -14.055   -6.015  -30.023   6.836   0.427   2.303  H24  VDJ  55  
VDJ  H25  H25  H  0  1  N  N  N  -11.857   -5.527  -30.122   5.781   1.549   0.359  H25  VDJ  56  
VDJ  H26  H26  H  0  1  N  N  N  -10.716   -5.558  -28.060   4.429  -1.105   1.017  H26  VDJ  57  
VDJ  H27  H27  H  0  1  N  N  N  -11.949   -4.532  -27.250   4.393   0.334   2.064  H27  VDJ  58  
VDJ  H28  H28  H  0  1  N  N  N  -10.948   -3.312  -29.553   5.943  -1.221  -0.913  H28  VDJ  59  
VDJ  H29  H29  H  0  1  N  N  N  -12.516   -2.865  -28.801   5.111   0.193  -1.605  H29  VDJ  60  
VDJ  H30  H30  H  0  1  N  N  N  -11.947   -3.446  -31.721   7.258   1.433  -1.653  H30  VDJ  61  
VDJ  H31  H31  H  0  1  N  N  N  -12.400   -1.877  -30.973   7.372  -0.078  -2.587  H31  VDJ  62  
VDJ  H32  H32  H  0  1  N  N  N  -13.056   -8.630  -26.362   1.159   1.157  -0.815  H32  VDJ  63  
VDJ  H33  H33  H  0  1  N  N  N  -10.338   -7.936  -22.519  -2.833  -0.353   0.442  H33  VDJ  64  
VDJ  H34  H34  H  0  1  N  N  N   -6.104   -3.353  -25.410  -3.113  -3.459   2.037  H34  VDJ  65  
VDJ  H35  H35  H  0  1  N  N  N   -8.273  -10.995  -21.543  -2.470   2.168  -1.664  H35  VDJ  66  
VDJ  O1   O6   O  0  1  N  Y  N   -8.030   -9.498  -19.188  -5.607   2.937  -0.829  O1   VDJ  67  
VDJ  O2   O7   O  0  1  N  Y  N        ?        ?        ?  -6.057   0.785  -0.073  O2   VDJ  68  
VDJ  O3   O8   O  0  1  N  Y  N        ?        ?        ?  -4.008   2.009   0.580  O3   VDJ  69  
VDJ  H20  H20  H  0  1  N  N  N   -8.396   -9.250  -18.347  -6.097   3.381  -0.123  H20  VDJ  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VDJ  F01  C02  SING  N  N   1  
VDJ  F03  C02  SING  N  N   2  
VDJ  C02  C31  SING  N  N   3  
VDJ  C02  C04  SING  N  N   4  
VDJ  C31  C30  SING  N  N   5  
VDJ  C04  C05  SING  N  N   6  
VDJ  C30  C06  SING  N  N   7  
VDJ  C05  C06  SING  N  N   8  
VDJ  C06  C07  SING  N  N   9  
VDJ  C07  O08  SING  N  N  10  
VDJ  O08  C09  SING  N  N  11  
VDJ  C23  C24  SING  N  N  12  
VDJ  C23  N22  SING  N  N  13  
VDJ  C09  N10  SING  N  N  14  
VDJ  C09  O29  DOUB  N  N  15  
VDJ  N10  C11  SING  N  N  16  
VDJ  C24  C20  SING  N  N  17  
VDJ  O28  C16  DOUB  N  N  18  
VDJ  N22  C21  SING  N  N  19  
VDJ  C11  C16  SING  N  N  20  
VDJ  C11  C12  SING  N  N  21  
VDJ  C16  N17  SING  N  N  22  
VDJ  C20  C21  SING  N  N  23  
VDJ  C20  C19  SING  N  N  24  
VDJ  C12  C13  SING  N  N  25  
VDJ  C21  O25  DOUB  N  N  26  
VDJ  C14  C13  SING  N  N  27  
VDJ  C13  C15  SING  N  N  28  
VDJ  N17  C18  SING  N  N  29  
VDJ  C18  C19  SING  N  N  30  
VDJ  C18  C26  SING  N  N  31  
VDJ  O27  C26  SING  N  N  32  
VDJ  C26  S    SING  N  N  33  
VDJ  C11  H1   SING  N  N  34  
VDJ  C12  H2   SING  N  N  35  
VDJ  C12  H3   SING  N  N  36  
VDJ  C13  H4   SING  N  N  37  
VDJ  C14  H5   SING  N  N  38  
VDJ  C14  H6   SING  N  N  39  
VDJ  C14  H7   SING  N  N  40  
VDJ  C15  H8   SING  N  N  41  
VDJ  C15  H9   SING  N  N  42  
VDJ  C15  H10  SING  N  N  43  
VDJ  C18  H11  SING  N  N  44  
VDJ  C19  H12  SING  N  N  45  
VDJ  C19  H13  SING  N  N  46  
VDJ  C20  H14  SING  N  N  47  
VDJ  C23  H15  SING  N  N  48  
VDJ  C23  H16  SING  N  N  49  
VDJ  C24  H17  SING  N  N  50  
VDJ  C24  H18  SING  N  N  51  
VDJ  C26  H19  SING  N  N  52  
VDJ  C04  H21  SING  N  N  53  
VDJ  C04  H22  SING  N  N  54  
VDJ  C05  H23  SING  N  N  55  
VDJ  C05  H24  SING  N  N  56  
VDJ  C06  H25  SING  N  N  57  
VDJ  C07  H26  SING  N  N  58  
VDJ  C07  H27  SING  N  N  59  
VDJ  C30  H28  SING  N  N  60  
VDJ  C30  H29  SING  N  N  61  
VDJ  C31  H30  SING  N  N  62  
VDJ  C31  H31  SING  N  N  63  
VDJ  N10  H32  SING  N  N  64  
VDJ  N17  H33  SING  N  N  65  
VDJ  N22  H34  SING  N  N  66  
VDJ  O27  H35  SING  N  N  67  
VDJ  S    O1   SING  N  N  68  
VDJ  S    O2   DOUB  N  N  69  
VDJ  S    O3   DOUB  N  N  70  
VDJ  O1   H20  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VDJ  SMILES            ACDLabs               12.01  "C(C(NC(CC1C(=O)NCC1)C(S(O)(=O)=O)O)=O)(CC(C)C)NC(=O)OCC2CCC(CC2)(F)F"  
VDJ  InChI             InChI                 1.03   "InChI=1S/C21H35F2N3O8S/c1-12(2)9-15(26-20(30)34-11-13-3-6-21(22,23)7-4-13)18(28)25-16(19(29)35(31,32)33)10-14-5-8-24-17(14)27/h12-16,19,29H,3-11H2,1-2H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t14-,15-,16-,19+/m0/s1"  
VDJ  InChIKey          InChI                 1.03   BHZBRFONZANPNK-IUVQAAGXSA-N  
VDJ  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCC1CCC(F)(F)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
VDJ  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCC1CCC(F)(F)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
VDJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC2CCC(CC2)(F)F"  
VDJ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(CC2)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VDJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
VDJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S})-2-[[(2~{S})-2-[[4,4-bis(fluoranyl)cyclohexyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VDJ  "Create component"  2020-07-30  RCSB  
VDJ  "Initial release"   2020-08-12  RCSB  
##
