data_LRK
# 
_chem_comp.id                                    LRK 
_chem_comp.name                                  "(2S)-2-azanyl-6-[[(2R,4R)-1,4-bis(oxidanyl)-3-oxidanylidene-5-phosphonooxy-pentan-2-yl]amino]hexanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H23 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-11-17 
_chem_comp.pdbx_modified_date                    2015-01-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        358.282 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WXZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LRK C   C1  C 0 1 N N N 0.891  164.740 14.557 7.650  -0.974 0.214  C   LRK 1  
LRK O   O1  O 0 1 N N N 0.774  164.241 13.459 7.999  -1.886 0.925  O   LRK 2  
LRK CA  C2  C 0 1 N N S 1.679  164.048 15.611 6.320  -1.036 -0.492 CA  LRK 3  
LRK N   N1  N 0 1 N N N 2.497  164.997 16.385 5.870  -2.432 -0.566 N   LRK 4  
LRK CB  C3  C 0 1 N N N 0.730  163.216 16.458 5.292  -0.208 0.283  CB  LRK 5  
LRK CG  C4  C 0 1 N N N 1.084  161.734 16.418 3.977  -0.168 -0.498 CG  LRK 6  
LRK CD  C5  C 0 1 N N N 0.895  161.084 17.778 2.949  0.659  0.277  CD  LRK 7  
LRK CE  C6  C 0 1 N N N 1.172  159.585 17.771 1.634  0.699  -0.504 CE  LRK 8  
LRK NZ  N2  N 0 1 N N N 0.333  158.930 18.804 0.647  1.493  0.240  NZ  LRK 9  
LRK C3  C7  C 0 1 N N R 0.371  157.455 18.714 -0.632 1.553  -0.481 C3  LRK 10 
LRK C2  C8  C 0 1 N N N -0.413 156.933 17.513 -0.586 2.689  -1.505 C2  LRK 11 
LRK O1  O2  O 0 1 N N N -0.751 155.559 17.719 -0.477 3.941  -0.824 O1  LRK 12 
LRK C5  C9  C 0 1 N N N -0.259 156.937 19.967 -1.749 1.804  0.498  C5  LRK 13 
LRK O13 O3  O 0 1 N N N -1.458 157.086 20.130 -1.507 2.272  1.584  O13 LRK 14 
LRK C6  C10 C 0 1 N N R 0.577  156.241 21.000 -3.170 1.470  0.121  C6  LRK 15 
LRK O14 O4  O 0 1 N N N 0.594  154.848 20.681 -4.069 2.194  0.964  O14 LRK 16 
LRK C7  C11 C 0 1 N N N -0.002 156.440 22.407 -3.405 -0.031 0.295  C7  LRK 17 
LRK O8  O5  O 0 1 N N N 1.013  156.272 23.399 -4.713 -0.366 -0.171 O8  LRK 18 
LRK P9  P1  P 0 1 N N N 1.310  154.849 24.084 -5.299 -1.866 -0.139 P9  LRK 19 
LRK O11 O6  O 0 1 N N N 2.639  154.874 24.735 -6.739 -1.895 -0.858 O11 LRK 20 
LRK O10 O7  O 0 1 N N N 1.219  153.723 22.939 -4.373 -2.773 -0.852 O10 LRK 21 
LRK O12 O8  O 0 1 N N N 0.230  154.518 25.219 -5.452 -2.349 1.390  O12 LRK 22 
LRK H2  H2  H 0 1 N N N 2.363  163.349 15.108 6.425  -0.633 -1.500 H2  LRK 23 
LRK H3  H3  H 0 1 N N N 3.013  164.501 17.083 6.499  -2.986 -1.128 H3  LRK 24 
LRK H4  H4  H 0 1 N N N 3.132  165.466 15.772 5.765  -2.827 0.356  H4  LRK 25 
LRK H6  H6  H 0 1 N N N 0.783  163.566 17.499 5.122  -0.663 1.259  H6  LRK 26 
LRK H7  H7  H 0 1 N N N -0.294 163.348 16.078 5.667  0.806  0.415  H7  LRK 27 
LRK H8  H8  H 0 1 N N N 0.435  161.230 15.687 4.148  0.286  -1.474 H8  LRK 28 
LRK H9  H9  H 0 1 N N N 2.135  161.625 16.112 3.602  -1.183 -0.630 H9  LRK 29 
LRK H10 H10 H 0 1 N N N 1.581  161.563 18.493 2.778  0.205  1.253  H10 LRK 30 
LRK H11 H11 H 0 1 N N N -0.144 161.246 18.102 3.324  1.673  0.409  H11 LRK 31 
LRK H12 H12 H 0 1 N N N 0.928  159.170 16.782 1.804  1.153  -1.480 H12 LRK 32 
LRK H13 H13 H 0 1 N N N 2.235  159.406 17.992 1.259  -0.316 -0.636 H13 LRK 33 
LRK H14 H14 H 0 1 N N N 0.664  159.205 19.707 0.519  1.129  1.172  H14 LRK 34 
LRK H16 H16 H 0 1 N N N 1.413  157.108 18.649 -0.804 0.608  -0.996 H16 LRK 35 
LRK H17 H17 H 0 1 N N N 0.202  157.026 16.606 0.276  2.555  -2.159 H17 LRK 36 
LRK H18 H18 H 0 1 N N N -1.334 157.522 17.393 -1.499 2.678  -2.101 H18 LRK 37 
LRK H19 H19 H 0 1 N N N -1.126 155.451 18.585 -0.443 4.707  -1.412 H19 LRK 38 
LRK H20 H20 H 0 1 N N N 1.598  156.650 20.976 -3.345 1.747  -0.919 H20 LRK 39 
LRK H21 H21 H 0 1 N N N 0.817  154.348 21.457 -3.970 1.997  1.905  H21 LRK 40 
LRK H22 H22 H 0 1 N N N -0.419 157.455 22.486 -2.662 -0.585 -0.279 H22 LRK 41 
LRK H23 H23 H 0 1 N N N -0.799 155.701 22.577 -3.317 -0.293 1.350  H23 LRK 42 
LRK H24 H24 H 0 1 N N N 3.195  154.209 24.346 -7.152 -2.769 -0.875 H24 LRK 43 
LRK H25 H25 H 0 1 N N N -0.243 153.727 24.986 -6.046 -1.798 1.918  H25 LRK 44 
LRK OXT O9  O 0 1 N N N ?      ?       ?      8.444  0.097  0.058  O2  LRK 45 
LRK HXT H1  H 0 1 N N N ?      ?       ?      9.287  0.092  0.531  H1  LRK 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LRK O   C   DOUB N N 1  
LRK C   CA  SING N N 2  
LRK CA  N   SING N N 3  
LRK CA  CB  SING N N 4  
LRK CG  CB  SING N N 5  
LRK CG  CD  SING N N 6  
LRK C2  O1  SING N N 7  
LRK C2  C3  SING N N 8  
LRK CE  CD  SING N N 9  
LRK CE  NZ  SING N N 10 
LRK C3  NZ  SING N N 11 
LRK C3  C5  SING N N 12 
LRK C5  O13 DOUB N N 13 
LRK C5  C6  SING N N 14 
LRK O14 C6  SING N N 15 
LRK C6  C7  SING N N 16 
LRK C7  O8  SING N N 17 
LRK O10 P9  DOUB N N 18 
LRK O8  P9  SING N N 19 
LRK P9  O11 SING N N 20 
LRK P9  O12 SING N N 21 
LRK CA  H2  SING N N 22 
LRK N   H3  SING N N 23 
LRK N   H4  SING N N 24 
LRK CB  H6  SING N N 25 
LRK CB  H7  SING N N 26 
LRK CG  H8  SING N N 27 
LRK CG  H9  SING N N 28 
LRK CD  H10 SING N N 29 
LRK CD  H11 SING N N 30 
LRK CE  H12 SING N N 31 
LRK CE  H13 SING N N 32 
LRK NZ  H14 SING N N 33 
LRK C3  H16 SING N N 34 
LRK C2  H17 SING N N 35 
LRK C2  H18 SING N N 36 
LRK O1  H19 SING N N 37 
LRK C6  H20 SING N N 38 
LRK O14 H21 SING N N 39 
LRK C7  H22 SING N N 40 
LRK C7  H23 SING N N 41 
LRK O11 H24 SING N N 42 
LRK O12 H25 SING N N 43 
LRK C   OXT SING N N 44 
LRK OXT HXT SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LRK SMILES           ACDLabs              12.01 "O=P(OCC(O)C(=O)C(NCCCCC(C(=O)O)N)CO)(O)O"                                                                                                      
LRK InChI            InChI                1.03  "InChI=1S/C11H23N2O9P/c12-7(11(17)18)3-1-2-4-13-8(5-14)10(16)9(15)6-22-23(19,20)21/h7-9,13-15H,1-6,12H2,(H,17,18)(H2,19,20,21)/t7-,8+,9+/m0/s1" 
LRK InChIKey         InChI                1.03  MTFNVQCMTVXWTF-DJLDLDEBSA-N                                                                                                                     
LRK SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCN[C@H](CO)C(=O)[C@H](O)CO[P](O)(O)=O)C(O)=O"                                                                                       
LRK SMILES           CACTVS               3.385 "N[CH](CCCCN[CH](CO)C(=O)[CH](O)CO[P](O)(O)=O)C(O)=O"                                                                                           
LRK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(CCN[C@H](CO)C(=O)[C@@H](COP(=O)(O)O)O)C[C@@H](C(=O)O)N"                                                                                      
LRK SMILES           "OpenEye OEToolkits" 1.9.2 "C(CCNC(CO)C(=O)C(COP(=O)(O)O)O)CC(C(=O)O)N"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LRK "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-6-{[(2R,4R)-1,4-dihydroxy-3-oxo-5-(phosphonooxy)pentan-2-yl]amino}hexanoic acid (non-preferred name)" 
LRK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-6-[[(2R,4R)-1,4-bis(oxidanyl)-3-oxidanylidene-5-phosphonooxy-pentan-2-yl]amino]hexanoic acid"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LRK "Create component" 2014-11-17 RCSB 
LRK "Initial release"  2015-01-14 RCSB 
# 
