data_ONK
#

_chem_comp.id                                   ONK
_chem_comp.name                                 "N-hexanoyl-L-valyl-N~1~-[(3S,4S)-3-hydroxy-2,6-dimethylhept-1-en-4-yl]-N~5~,N~5~-dimethyl-L-glutamamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H50 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "vinylketone carmaphycin analogue VNK1, single bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-11-01
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       510.710
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ONK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4HNP
_chem_comp.pdbx_subcomponent_list               "6NA VAL QMM 17U"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ONK  C27  C27  C  0  1  N  N  N  58.056  -134.697  33.924   5.973  -0.565   0.246  CA    6NA   1  
ONK  C1   C1   C  0  1  N  N  N  59.162  -135.369  34.707   4.659  -1.167  -0.181  C     6NA   2  
ONK  O1   O1   O  0  1  N  N  N  59.014  -136.511  35.124   4.613  -1.901  -1.145  O     6NA   3  
ONK  C28  C28  C  0  1  N  N  N  56.829  -134.574  34.820   7.081  -1.037  -0.697  CB    6NA   4  
ONK  C29  C29  C  0  1  N  N  N  55.866  -133.507  34.320   8.415  -0.426  -0.264  CG    6NA   5  
ONK  C30  C30  C  0  1  N  N  N  54.429  -133.837  34.712   9.523  -0.898  -1.207  CD    6NA   6  
ONK  C31  C31  C  0  1  N  N  N  53.449  -133.301  33.688  10.857  -0.286  -0.774  C6    6NA   7  
ONK  N1   N1   N  0  1  N  N  N  60.260  -134.637  34.899   3.535  -0.889   0.509  N     VAL   8  
ONK  C2   C2   C  0  1  N  N  S  61.431  -135.091  35.633   2.257  -1.474   0.093  CA    VAL   9  
ONK  C5   C5   C  0  1  N  N  N  61.111  -135.222  37.099   1.126  -0.598   0.567  C     VAL  10  
ONK  O3   O3   O  0  1  N  N  N  60.532  -134.312  37.669   1.272   0.105   1.544  O     VAL  11  
ONK  C3   C3   C  0  1  N  N  N  62.578  -134.107  35.399   2.113  -2.869   0.705  CB    VAL  12  
ONK  C4   C4   C  0  1  N  N  N  63.062  -134.163  33.956   0.789  -3.490   0.253  CG1   VAL  13  
ONK  C26  C26  C  0  1  N  N  N  63.747  -134.329  36.349   2.131  -2.761   2.231  CG2   VAL  14  
ONK  C10  C10  C  0  1  N  N  N  62.470  -136.567  39.960  -2.467  -0.410  -0.079  C     QMM  15  
ONK  C9   C9   C  0  1  N  N  N  58.110  -138.435  38.845   0.306   3.699   0.019  CD    QMM  16  
ONK  C8   C8   C  0  1  N  N  N  59.488  -138.257  38.246   0.191   2.279   0.512  CG    QMM  17  
ONK  N2   N2   N  0  1  N  N  N  61.477  -136.352  37.710  -0.048  -0.597  -0.096  N     QMM  18  
ONK  O7   O7   O  0  1  N  N  N  57.944  -139.221  39.766  -0.529   4.147  -0.738  OE1   QMM  19  
ONK  N5   N5   N  0  1  N  N  N  57.113  -137.716  38.315   1.334   4.471   0.423  NE2   QMM  20  
ONK  C24  C24  C  0  1  N  N  N  56.987  -136.279  38.528   1.442   5.853  -0.052  CH1   QMM  21  
ONK  C25  C25  C  0  1  N  N  N  56.067  -138.311  37.482   2.342   3.929   1.337  CH2   QMM  22  
ONK  C6   C6   C  0  1  N  N  S  61.219  -136.606  39.122  -1.174   0.189   0.412  CA    QMM  23  
ONK  C7   C7   C  0  1  N  N  N  60.514  -137.947  39.332  -1.058   1.630  -0.088  CB    QMM  24  
ONK  O2   O2   O  0  1  N  N  N  63.572  -136.746  39.456  -2.449  -1.396  -0.784  O     QMM  25  
ONK  N3   N3   N  0  1  N  N  N  62.290  -136.332  41.260  -3.643   0.151   0.265  N3    17U  26  
ONK  C11  C11  C  0  1  N  N  S  63.374  -136.251  42.225  -4.900  -0.432  -0.212  C11   17U  27  
ONK  C16  C16  C  0  1  N  N  S  63.291  -137.402  43.241  -5.216   0.112  -1.607  C16   17U  28  
ONK  O6   O6   O  0  1  N  N  N  62.088  -137.242  44.015  -4.160  -0.235  -2.504  O6    17U  29  
ONK  C17  C17  C  0  1  N  N  N  63.245  -138.747  42.526  -6.509  -0.488  -2.098  C17   17U  30  
ONK  C23  C23  C  0  1  N  N  N  64.358  -139.174  41.609  -6.602  -1.969  -2.359  C23   17U  31  
ONK  C18  C18  C  0  1  N  N  N  62.228  -139.575  42.701  -7.552   0.279  -2.298  C18   17U  32  
ONK  C12  C12  C  0  1  N  N  N  63.318  -134.876  42.895  -6.031  -0.061   0.749  C12   17U  33  
ONK  C13  C13  C  0  1  N  N  N  64.322  -133.833  42.402  -5.760  -0.682   2.121  C13   17U  34  
ONK  C15  C15  C  0  1  N  N  N  64.725  -133.968  40.937  -6.822  -0.208   3.114  C15   17U  35  
ONK  C14  C14  C  0  1  N  N  N  63.779  -132.433  42.662  -5.809  -2.207   2.010  C14   17U  36  
ONK  H40  H40  H  0  1  N  N  N  58.383  -133.696  33.605   5.903   0.523   0.210  HAC1  6NA  37  
ONK  H41  H41  H  0  1  N  N  N  57.809  -135.302  33.039   6.203  -0.880   1.264  HAC2  6NA  38  
ONK  H42  H42  H  0  1  N  N  N  56.307  -135.542  34.843   7.150  -2.124  -0.661  HBC1  6NA  39  
ONK  H43  H43  H  0  1  N  N  N  57.156  -134.310  35.837   6.850  -0.721  -1.715  HBC2  6NA  40  
ONK  H44  H44  H  0  1  N  N  N  55.934  -133.446  33.224   8.345   0.662  -0.300  HGC1  6NA  41  
ONK  H45  H45  H  0  1  N  N  N  56.145  -132.538  34.759   8.645  -0.741   0.754  HGC2  6NA  42  
ONK  H46  H46  H  0  1  N  N  N  54.210  -133.384  35.690   9.592  -1.985  -1.171  HDC1  6NA  43  
ONK  H47  H47  H  0  1  N  N  N  54.317  -134.929  34.780   9.292  -0.582  -2.225  HDC2  6NA  44  
ONK  H48  H48  H  0  1  N  N  N  52.423  -133.553  33.995  10.787   0.801  -0.810  H6C1  6NA  45  
ONK  H49  H49  H  0  1  N  N  N  53.553  -132.208  33.618  11.087  -0.602   0.244  H6C2  6NA  46  
ONK  H50  H50  H  0  1  N  N  N  53.660  -133.753  32.708  11.646  -0.623  -1.446  H6C3  6NA  47  
ONK  H39  H39  H  0  1  N  N  N  60.280  -133.715  34.513   3.571  -0.302   1.280  H     VAL  48  
ONK  H31  H31  H  0  1  N  N  N  61.738  -136.076  35.252   2.228  -1.549  -0.994  HA    VAL  49  
ONK  H32  H32  H  0  1  N  N  N  62.189  -133.094  35.581   2.940  -3.498   0.375  HB    VAL  50  
ONK  H36  H36  H  0  1  N  N  N  63.885  -133.447  33.817   0.688  -4.485   0.685  HG11  VAL  51  
ONK  H37  H37  H  0  1  N  N  N  63.417  -135.179  33.728  -0.038  -2.863   0.586  HG12  VAL  52  
ONK  H38  H38  H  0  1  N  N  N  62.233  -133.904  33.281   0.775  -3.562  -0.835  HG13  VAL  53  
ONK  H33  H33  H  0  1  N  N  N  63.389  -134.287  37.388   1.303  -2.133   2.560  HG21  VAL  54  
ONK  H34  H34  H  0  1  N  N  N  64.195  -135.315  36.155   2.027  -3.755   2.667  HG22  VAL  55  
ONK  H35  H35  H  0  1  N  N  N  64.503  -133.546  36.190   3.073  -2.319   2.553  HG23  VAL  56  
ONK  H7   H7   H  0  1  N  N  N  59.779  -139.183  37.729   1.074   1.717   0.208  HG1   QMM  57  
ONK  H8   H8   H  0  1  N  N  N  59.464  -137.426  37.525   0.115   2.277   1.599  HG2   QMM  58  
ONK  H30  H30  H  0  1  N  N  N  61.948  -137.054  37.176  -0.146  -1.116  -0.909  H     QMM  59  
ONK  H4   H4   H  0  1  N  N  N  57.814  -135.928  39.162   0.608   6.075  -0.718  HH1   QMM  60  
ONK  H5   H5   H  0  1  N  N  N  57.022  -135.760  37.559   1.418   6.533   0.800  HH1A  QMM  61  
ONK  H6   H6   H  0  1  N  N  N  56.029  -136.065  39.024   2.381   5.979  -0.591  HH1B  QMM  62  
ONK  H1   H1   H  0  1  N  N  N  56.248  -139.391  37.381   2.037   4.114   2.366  HH2   QMM  63  
ONK  H2   H2   H  0  1  N  N  N  55.086  -138.147  37.952   2.441   2.856   1.174  HH2A  QMM  64  
ONK  H3   H3   H  0  1  N  N  N  56.080  -137.842  36.487   3.300   4.415   1.149  HH2B  QMM  65  
ONK  H11  H11  H  0  1  N  N  N  60.545  -135.820  39.494  -1.161   0.181   1.502  HA    QMM  66  
ONK  H9   H9   H  0  1  N  N  N  60.000  -137.924  40.304  -1.941   2.193   0.215  HB2   QMM  67  
ONK  H10  H10  H  0  1  N  N  N  61.272  -138.745  39.337  -0.982   1.632  -1.176  HB3   QMM  68  
ONK  H12  H12  H  0  1  N  N  N  61.355  -136.204  41.590  -3.658   0.940   0.829  H12   17U  69  
ONK  H13  H13  H  0  1  N  N  N  64.334  -136.334  41.695  -4.803  -1.517  -0.258  H13   17U  70  
ONK  H14  H14  H  0  1  N  N  N  64.175  -137.369  43.895  -5.313   1.196  -1.561  H14   17U  71  
ONK  H15  H15  H  0  1  N  N  N  62.022  -137.947  44.648  -3.296   0.118  -2.250  H15   17U  72  
ONK  H16  H16  H  0  1  N  N  N  65.123  -138.385  41.568  -7.605  -2.215  -2.706  H16   17U  73  
ONK  H17  H17  H  0  1  N  N  N  64.809  -140.103  41.988  -5.875  -2.250  -3.122  H17   17U  74  
ONK  H18  H18  H  0  1  N  N  N  63.956  -139.347  40.600  -6.391  -2.514  -1.439  H18   17U  75  
ONK  H19  H19  H  0  1  N  N  N  61.416  -139.301  43.358  -8.479  -0.150  -2.650  H19   17U  76  
ONK  H20  H20  H  0  1  N  N  N  62.210  -140.525  42.187  -7.486   1.341  -2.111  H20   17U  77  
ONK  H21  H21  H  0  1  N  N  N  62.309  -134.469  42.737  -6.086   1.023   0.845  H21   17U  78  
ONK  H22  H22  H  0  1  N  N  N  63.490  -135.022  43.972  -6.977  -0.440   0.360  H22   17U  79  
ONK  H23  H23  H  0  1  N  N  N  65.235  -133.948  43.005  -4.773  -0.375   2.469  H23   17U  80  
ONK  H24  H24  H  0  1  N  N  N  65.116  -134.980  40.755  -7.798  -0.585   2.810  H24   17U  81  
ONK  H25  H25  H  0  1  N  N  N  63.847  -133.794  40.298  -6.582  -0.582   4.109  H25   17U  82  
ONK  H26  H26  H  0  1  N  N  N  65.503  -133.227  40.701  -6.843   0.882   3.132  H26   17U  83  
ONK  H27  H27  H  0  1  N  N  N  63.490  -132.342  43.719  -5.052  -2.544   1.302  H27   17U  84  
ONK  H28  H28  H  0  1  N  N  N  64.555  -131.690  42.429  -5.615  -2.649   2.987  H28   17U  85  
ONK  H29  H29  H  0  1  N  N  N  62.899  -132.257  42.025  -6.795  -2.514   1.661  H29   17U  86  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ONK  C31  C30  SING  N  N   1  
ONK  C27  C1   SING  N  N   2  
ONK  C27  C28  SING  N  N   3  
ONK  C4   C3   SING  N  N   4  
ONK  C29  C30  SING  N  N   5  
ONK  C29  C28  SING  N  N   6  
ONK  C1   N1   SING  N  N   7  
ONK  C1   O1   DOUB  N  N   8  
ONK  N1   C2   SING  N  N   9  
ONK  C3   C2   SING  N  N  10  
ONK  C3   C26  SING  N  N  11  
ONK  C2   C5   SING  N  N  12  
ONK  C5   O3   DOUB  N  N  13  
ONK  C5   N2   SING  N  N  14  
ONK  C25  N5   SING  N  N  15  
ONK  N2   C6   SING  N  N  16  
ONK  C8   C9   SING  N  N  17  
ONK  C8   C7   SING  N  N  18  
ONK  N5   C24  SING  N  N  19  
ONK  N5   C9   SING  N  N  20  
ONK  C9   O7   DOUB  N  N  21  
ONK  C6   C7   SING  N  N  22  
ONK  C6   C10  SING  N  N  23  
ONK  O2   C10  DOUB  N  N  24  
ONK  C10  N3   SING  N  N  25  
ONK  C15  C13  SING  N  N  26  
ONK  N3   C11  SING  N  N  27  
ONK  C23  C17  SING  N  N  28  
ONK  C11  C12  SING  N  N  29  
ONK  C11  C16  SING  N  N  30  
ONK  C13  C14  SING  N  N  31  
ONK  C13  C12  SING  N  N  32  
ONK  C17  C18  DOUB  N  N  33  
ONK  C17  C16  SING  N  N  34  
ONK  C16  O6   SING  N  N  35  
ONK  C25  H1   SING  N  N  36  
ONK  C25  H2   SING  N  N  37  
ONK  C25  H3   SING  N  N  38  
ONK  C24  H4   SING  N  N  39  
ONK  C24  H5   SING  N  N  40  
ONK  C24  H6   SING  N  N  41  
ONK  C8   H7   SING  N  N  42  
ONK  C8   H8   SING  N  N  43  
ONK  C7   H9   SING  N  N  44  
ONK  C7   H10  SING  N  N  45  
ONK  C6   H11  SING  N  N  46  
ONK  N3   H12  SING  N  N  47  
ONK  C11  H13  SING  N  N  48  
ONK  C16  H14  SING  N  N  49  
ONK  O6   H15  SING  N  N  50  
ONK  C23  H16  SING  N  N  51  
ONK  C23  H17  SING  N  N  52  
ONK  C23  H18  SING  N  N  53  
ONK  C18  H19  SING  N  N  54  
ONK  C18  H20  SING  N  N  55  
ONK  C12  H21  SING  N  N  56  
ONK  C12  H22  SING  N  N  57  
ONK  C13  H23  SING  N  N  58  
ONK  C15  H24  SING  N  N  59  
ONK  C15  H25  SING  N  N  60  
ONK  C15  H26  SING  N  N  61  
ONK  C14  H27  SING  N  N  62  
ONK  C14  H28  SING  N  N  63  
ONK  C14  H29  SING  N  N  64  
ONK  N2   H30  SING  N  N  65  
ONK  C2   H31  SING  N  N  66  
ONK  C3   H32  SING  N  N  67  
ONK  C26  H33  SING  N  N  68  
ONK  C26  H34  SING  N  N  69  
ONK  C26  H35  SING  N  N  70  
ONK  C4   H36  SING  N  N  71  
ONK  C4   H37  SING  N  N  72  
ONK  C4   H38  SING  N  N  73  
ONK  N1   H39  SING  N  N  74  
ONK  C27  H40  SING  N  N  75  
ONK  C27  H41  SING  N  N  76  
ONK  C28  H42  SING  N  N  77  
ONK  C28  H43  SING  N  N  78  
ONK  C29  H44  SING  N  N  79  
ONK  C29  H45  SING  N  N  80  
ONK  C30  H46  SING  N  N  81  
ONK  C30  H47  SING  N  N  82  
ONK  C31  H48  SING  N  N  83  
ONK  C31  H49  SING  N  N  84  
ONK  C31  H50  SING  N  N  85  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ONK  SMILES            ACDLabs               12.01  "O=C(NC(CC(C)C)C(O)C(=C)\C)C(NC(=O)C(NC(=O)CCCCC)C(C)C)CCC(=O)N(C)C"  
ONK  InChI             InChI                 1.03   "InChI=1S/C27H50N4O5/c1-10-11-12-13-22(32)30-24(18(4)5)27(36)28-20(14-15-23(33)31(8)9)26(35)29-21(16-17(2)3)25(34)19(6)7/h17-18,20-21,24-25,34H,6,10-16H2,1-5,7-9H3,(H,28,36)(H,29,35)(H,30,32)/t20-,21-,24-,25-/m0/s1"  
ONK  InChIKey          InChI                 1.03   KBKIHHNRHOTMRE-NBMBROAQSA-N  
ONK  SMILES_CANONICAL  CACTVS                3.370  "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCC(=O)N(C)C)C(=O)N[C@@H](CC(C)C)[C@@H](O)C(C)=C"  
ONK  SMILES            CACTVS                3.370  "CCCCCC(=O)N[CH](C(C)C)C(=O)N[CH](CCC(=O)N(C)C)C(=O)N[CH](CC(C)C)[CH](O)C(C)=C"  
ONK  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCC(=O)N(C)C)C(=O)N[C@@H](CC(C)C)[C@H](C(=C)C)O"  
ONK  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCC(=O)NC(C(C)C)C(=O)NC(CCC(=O)N(C)C)C(=O)NC(CC(C)C)C(C(=C)C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ONK  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-hexanoyl-L-valyl-N~1~-[(3S,4S)-3-hydroxy-2,6-dimethylhept-1-en-4-yl]-N~5~,N~5~-dimethyl-L-glutamamide"  
ONK  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-N-[(3S,4S)-2,6-dimethyl-3-oxidanyl-hept-1-en-4-yl]-2-[[(2S)-2-(hexanoylamino)-3-methyl-butanoyl]amino]-N',N'-dimethyl-pentanediamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ONK  "Create component"  2012-11-01  RCSB  
ONK  "Initial release"   2014-01-29  RCSB  
ONK  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ONK
_pdbx_chem_comp_synonyms.name        "vinylketone carmaphycin analogue VNK1, single bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
