data_ZYK
# 
_chem_comp.id                                    ZYK 
_chem_comp.name                                  "(4R)-4-({[(3,4-dimethoxyphenyl)carbonyl]amino}oxy)-L-proline" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C14 H18 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         "3,4-dimethoxybenzamidoxy proline" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-10-22 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        310.303 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZYK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3P9G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZYK C   C   C 0 1 N N N Y N Y 4.096  -1.343 -0.631 -6.435 -0.093 -0.237 C   ZYK 1  
ZYK N   N   N 0 1 N N N Y Y N 2.555  -1.564 1.223  -4.627 -0.987 1.167  N   ZYK 2  
ZYK O   O   O 0 1 N N N Y N Y 4.166  -1.915 -1.709 -6.835 -1.230 -0.333 O   ZYK 3  
ZYK C1  C1  C 0 1 N N N N N N -1.208 1.175  2.411  0.691  0.862  -0.009 C1  ZYK 4  
ZYK N1  N1  N 0 1 N N N N N N -0.061 1.750  2.240  -0.394 0.067  -0.096 N1  ZYK 5  
ZYK O1  O1  O 0 1 N N N N N N 0.680  1.566  1.209  -1.691 0.634  -0.062 O1  ZYK 6  
ZYK C2  C2  C 0 1 Y N N N N N -1.939 1.378  3.573  2.043  0.271  -0.044 C2  ZYK 7  
ZYK O2  O2  O 0 1 N N N N N N -1.692 0.500  1.510  0.557  2.065  0.098  O2  ZYK 8  
ZYK C3  C3  C 0 1 Y N N N N N -3.307 1.716  3.497  3.170  1.093  0.046  C3  ZYK 9  
ZYK O3  O3  O 0 1 N N N N N N -4.251 1.893  6.965  5.824  -1.393 -0.140 O3  ZYK 10 
ZYK C4  C4  C 0 1 Y N N N N N -1.347 1.262  4.851  2.200  -1.113 -0.162 C4  ZYK 11 
ZYK O4  O4  O 0 1 N N N N N N -5.334 2.244  4.613  5.531  1.332  0.101  O4  ZYK 12 
ZYK C5  C5  C 0 1 Y N N N N N -2.114 1.450  6.013  3.463  -1.663 -0.193 C5  ZYK 13 
ZYK C6  C6  C 0 1 Y N N N N N -3.494 1.762  5.936  4.582  -0.846 -0.109 C6  ZYK 14 
ZYK C7  C7  C 0 1 N N N N N N -4.014 1.701  8.270  5.904  -2.815 -0.261 C7  ZYK 15 
ZYK C8  C8  C 0 1 Y N N N N N -4.092 1.922  4.660  4.433  0.535  0.013  C8  ZYK 16 
ZYK C9  C9  C 0 1 N N N N N N -6.124 2.554  3.575  5.304  2.737  0.225  C9  ZYK 17 
ZYK CA  CA  C 0 1 N N S Y N N 2.813  -0.936 -0.084 -5.084 0.181  0.371  CA  ZYK 18 
ZYK CB  CB  C 0 1 N N N N N N 2.664  0.585  0.163  -4.018 0.339  -0.735 CB  ZYK 19 
ZYK CD  CD  C 0 1 N N N N N N 1.483  -0.756 1.820  -3.152 -0.825 1.239  CD  ZYK 20 
ZYK CG  CG  C 0 1 N N R N N N 1.811  0.706  1.447  -2.747 -0.323 -0.164 CG  ZYK 21 
ZYK OXT O6  O 0 1 N Y N Y N Y 5.147  -1.137 -0.033 -7.192 0.924  -0.678 O6  ZYK 22 
ZYK H   HN  H 0 1 N Y N Y Y N 2.270  -2.516 1.115  -5.037 -0.978 2.089  HN  ZYK 23 
ZYK HN1 HN1 H 0 1 N N N N N N 0.266  2.372  2.951  -0.287 -0.893 -0.182 HN1 ZYK 24 
ZYK H3  H3  H 0 1 N N N N N N -3.769 1.821  2.526  3.053  2.162  0.141  H3  ZYK 25 
ZYK H4  H4  H 0 1 N N N N N N -0.296 1.027  4.935  1.331  -1.751 -0.227 H4  ZYK 26 
ZYK H5  H5  H 0 1 N N N N N N -1.644 1.355  6.981  3.582  -2.733 -0.284 H5  ZYK 27 
ZYK H7  H7  H 0 1 N N N N N N -4.926 1.920  8.845  6.950  -3.120 -0.274 H7  ZYK 28 
ZYK H7A H7A H 0 1 N N N N N N -3.717 0.655  8.439  5.400  -3.281 0.586  H7A ZYK 29 
ZYK H7B H7B H 0 1 N N N N N N -3.204 2.370  8.598  5.423  -3.128 -1.188 H7B ZYK 30 
ZYK H9  H9  H 0 1 N N N N N N -7.138 2.775  3.939  6.261  3.256  0.286  H9  ZYK 31 
ZYK H9A H9A H 0 1 N N N N N N -5.720 3.437  3.058  4.752  3.095  -0.644 H9A ZYK 32 
ZYK H9B H9B H 0 1 N N N N N N -6.162 1.705  2.877  4.727  2.934  1.129  H9B ZYK 33 
ZYK HA  HA  H 0 1 N N N Y N N 2.104  -1.256 -0.862 -5.122 1.075  0.994  HA  ZYK 34 
ZYK HB  HB  H 0 1 N N N N N N 3.647  1.059  0.299  -4.335 -0.173 -1.643 HB  ZYK 35 
ZYK HBA HBA H 0 1 N N N N N N 2.166  1.074  -0.687 -3.836 1.394  -0.938 HBA ZYK 36 
ZYK HD  HD  H 0 1 N N N N N N 0.502  -1.051 1.419  -2.886 -0.089 1.998  HD  ZYK 37 
ZYK HDA HDA H 0 1 N N N N N N 1.459  -0.885 2.912  -2.675 -1.781 1.453  HDA ZYK 38 
ZYK HG  HG  H 0 1 N N N N N N 2.314  1.189  2.298  -2.440 -1.159 -0.792 HG  ZYK 39 
ZYK HXT H18 H 0 1 N Y N Y N Y 5.873  -1.478 -0.542 -8.049 0.698  -1.064 H18 ZYK 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZYK C   O   DOUB N N 1  
ZYK C   CA  SING N N 2  
ZYK C   OXT SING N N 3  
ZYK N   CA  SING N N 4  
ZYK N   CD  SING N N 5  
ZYK N   H   SING N N 6  
ZYK C1  N1  SING N N 7  
ZYK C1  C2  SING N N 8  
ZYK C1  O2  DOUB N N 9  
ZYK N1  O1  SING N N 10 
ZYK N1  HN1 SING N N 11 
ZYK O1  CG  SING N N 12 
ZYK C2  C3  DOUB Y N 13 
ZYK C2  C4  SING Y N 14 
ZYK C3  C8  SING Y N 15 
ZYK C3  H3  SING N N 16 
ZYK O3  C6  SING N N 17 
ZYK O3  C7  SING N N 18 
ZYK C4  C5  DOUB Y N 19 
ZYK C4  H4  SING N N 20 
ZYK O4  C8  SING N N 21 
ZYK O4  C9  SING N N 22 
ZYK C5  C6  SING Y N 23 
ZYK C5  H5  SING N N 24 
ZYK C6  C8  DOUB Y N 25 
ZYK C7  H7  SING N N 26 
ZYK C7  H7A SING N N 27 
ZYK C7  H7B SING N N 28 
ZYK C9  H9  SING N N 29 
ZYK C9  H9A SING N N 30 
ZYK C9  H9B SING N N 31 
ZYK CA  CB  SING N N 32 
ZYK CA  HA  SING N N 33 
ZYK CB  CG  SING N N 34 
ZYK CB  HB  SING N N 35 
ZYK CB  HBA SING N N 36 
ZYK CD  CG  SING N N 37 
ZYK CD  HD  SING N N 38 
ZYK CD  HDA SING N N 39 
ZYK CG  HG  SING N N 40 
ZYK OXT HXT SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZYK SMILES           ACDLabs              12.01 "O=C(NOC1CC(C(=O)O)NC1)c2ccc(OC)c(OC)c2"                                                                                                        
ZYK SMILES_CANONICAL CACTVS               3.370 "COc1ccc(cc1OC)C(=O)NO[C@H]2CN[C@@H](C2)C(O)=O"                                                                                                 
ZYK SMILES           CACTVS               3.370 "COc1ccc(cc1OC)C(=O)NO[CH]2CN[CH](C2)C(O)=O"                                                                                                    
ZYK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COc1ccc(cc1OC)C(=O)NO[C@@H]2C[C@H](NC2)C(=O)O"                                                                                                 
ZYK SMILES           "OpenEye OEToolkits" 1.7.0 "COc1ccc(cc1OC)C(=O)NOC2CC(NC2)C(=O)O"                                                                                                          
ZYK InChI            InChI                1.03  "InChI=1S/C14H18N2O6/c1-20-11-4-3-8(5-12(11)21-2)13(17)16-22-9-6-10(14(18)19)15-7-9/h3-5,9-10,15H,6-7H2,1-2H3,(H,16,17)(H,18,19)/t9-,10+/m1/s1" 
ZYK InChIKey         InChI                1.03  WPKMWFSKVVSYBX-ZJUUUORDSA-N                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZYK "SYSTEMATIC NAME" ACDLabs              12.01 "(4R)-4-{[(3,4-dimethoxybenzoyl)amino]oxy}-L-proline"                            
ZYK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,4R)-4-[(3,4-dimethoxyphenyl)carbonylamino]oxypyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZYK "Create component"  2010-10-22 RCSB 
ZYK "Modify descriptor" 2011-06-04 RCSB 
ZYK "Modify synonyms"   2021-03-13 RCSB 
ZYK "Modify backbone"   2023-11-03 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ZYK 
_pdbx_chem_comp_synonyms.name         "3,4-dimethoxybenzamidoxy proline" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
