data_H6L
#

_chem_comp.id                                   H6L
_chem_comp.name                                 "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H37 N5 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-19
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       531.601
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H6L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DGI
_chem_comp.pdbx_subcomponent_list               "4NB VAL LEU ELF"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H6L  C26  C9   C   0  1  N  N  N   -7.642  16.648  39.782   4.247  -0.658   1.153  C       4NB   1  
H6L  O36  O5   O   0  1  N  N  N   -7.792  17.271  40.781   4.360  -1.333   2.158  O2      4NB   2  
H6L  C27  C22  C   0  1  Y  N  N   -6.334  16.893  38.935   5.453  -0.140   0.472  C1      4NB   3  
H6L  C28  C10  C   0  1  Y  N  N   -5.378  15.963  38.462   6.721  -0.426   0.979  C2      4NB   4  
H6L  C29  C23  C   0  1  Y  N  N   -4.281  16.462  37.702   7.842   0.060   0.337  C3      4NB   5  
H6L  C30  C24  C   0  1  Y  N  N   -4.171  17.841  37.417   7.711   0.828  -0.806  C4      4NB   6  
H6L  C34  C25  C   0  1  Y  N  N   -5.139  18.734  37.891   6.456   1.115  -1.313  C5      4NB   7  
H6L  C35  C26  C   0  1  Y  N  N   -6.206  18.250  38.637   5.327   0.631  -0.685  C6      4NB   8  
H6L  N31  N5   N   1  1  N  N  N   -3.093  18.476  36.644   8.917   1.346  -1.489  N       4NB   9  
H6L  O32  O3   O  -1  1  N  N  N   -2.184  17.730  35.869   8.805   2.023  -2.495  "O1'"   4NB  10  
H6L  O33  O4   O   0  1  N  N  N   -2.995  19.655  36.675  10.023   1.096  -1.044  "O2'"   4NB  11  
H6L  N25  N4   N   0  1  N  N  N   -8.755  15.774  39.362   3.024  -0.386   0.658  N       VAL  12  
H6L  C21  C6   C   0  1  N  N  S   -9.877  15.819  40.285   1.829  -0.904   1.331  CA      VAL  13  
H6L  C20  C5   C   0  1  N  N  N  -10.289  14.481  40.846   0.702  -1.014   0.337  C       VAL  14  
H6L  O37  O6   O   0  1  N  N  N  -10.532  13.562  40.137   0.878  -0.692  -0.819  O       VAL  15  
H6L  C22  C7   C   0  1  N  N  N  -11.101  16.436  39.541   1.425   0.049   2.457  CB      VAL  16  
H6L  C24  C8   C   0  1  N  N  N  -10.702  17.581  38.571   2.569   0.162   3.466  CG1     VAL  17  
H6L  C23  C21  C   0  1  N  N  N  -12.216  16.885  40.512   1.122   1.431   1.873  CG2     VAL  18  
H6L  N19  N3   N   0  1  N  N  N  -10.396  14.418  42.316  -0.503  -1.471   0.733  N       LEU  19  
H6L  C14  C18  C   0  1  N  N  S  -10.805  13.224  43.000  -1.629  -1.475  -0.205  CA      LEU  20  
H6L  C13  C2   C   0  1  N  N  N  -12.316  13.129  42.742  -2.920  -1.336   0.560  C       LEU  21  
H6L  O38  O7   O   0  1  N  N  N  -13.042  14.043  42.953  -2.954  -1.595   1.745  O       LEU  22  
H6L  C15  C3   C   0  1  N  N  N  -10.509  13.406  44.491  -1.638  -2.791  -0.985  CB      LEU  23  
H6L  C16  C19  C   0  1  N  N  N   -8.947  13.498  44.772  -2.727  -2.740  -2.059  CG      LEU  24  
H6L  C17  C4   C   0  1  N  N  N   -8.186  12.316  44.127  -2.354  -1.696  -3.113  CD1     LEU  25  
H6L  C18  C20  C   0  1  N  N  N   -8.650  13.589  46.271  -2.853  -4.112  -2.723  CD2     LEU  26  
H6L  C07  C16  C   0  1  N  N  N  -14.365  14.640  38.518  -4.900   3.724   0.943  C6      ELF  27  
H6L  C03  C12  C   0  1  N  N  S  -14.287  11.782  41.947  -5.264  -0.687   0.691  C11     ELF  28  
H6L  C06  C15  C   0  1  N  N  N  -14.565  13.737  39.645  -5.330   2.264   1.137  C13     ELF  29  
H6L  C10  C1   C   0  1  N  N  N  -14.100  11.843  37.988  -6.323   2.504  -1.126  C15     ELF  30  
H6L  C04  C13  C   0  1  N  N  N  -14.510  11.412  40.478  -6.176   0.261  -0.092  C17     ELF  31  
H6L  C02  C11  C   0  1  N  N  N  -14.818  10.712  42.860  -5.976  -1.996   0.917  C24     ELF  32  
H6L  C05  C14  C   0  1  N  N  S  -13.925  12.470  39.440  -5.490   1.620  -0.243  C25     ELF  33  
H6L  C08  C17  C   0  1  N  N  N  -15.091  14.145  37.322  -6.056   4.495   0.306  C27     ELF  34  
H6L  N12  N1   N   0  1  N  N  N  -12.846  11.885  42.197  -4.036  -0.923  -0.072  N3      ELF  35  
H6L  N09  N2   N   0  1  N  N  N  -14.707  12.726  36.896  -6.548   3.794  -0.874  N4      ELF  36  
H6L  O01  O1   O   0  1  N  N  N  -15.988  10.540  42.868  -5.505  -3.021   0.485  O3      ELF  37  
H6L  O11  O2   O   0  1  N  N  N  -13.769  10.732  37.760  -6.817   2.019  -2.121  O4      ELF  38  
H6L  H12  H12  H   0  1  N  N  N   -5.477  14.908  38.671   6.826  -1.025   1.871  H2      4NB  39  
H6L  H32  H32  H   0  1  N  N  N   -3.526  15.779  37.340   8.825  -0.159   0.729  H3      4NB  40  
H6L  H33  H33  H   0  1  N  N  N   -5.057  19.790  37.679   6.360   1.716  -2.206  H5      4NB  41  
H6L  H34  H34  H   0  1  N  N  N   -6.955  18.941  38.995   4.348   0.855  -1.082  H6      4NB  42  
H6L  H37  H37  H   0  1  N  N  N   -8.739  15.213  38.534   2.934   0.153  -0.143  H       VAL  43  
H6L  H7   H7   H   0  1  N  N  N   -9.625  16.484  41.124   2.045  -1.888   1.747  HA      VAL  44  
H6L  H8   H8   H   0  1  N  N  N  -11.527  15.633  38.921   0.536  -0.336   2.957  HB      VAL  45  
H6L  H9   H9   H   0  1  N  N  N  -11.603  17.975  38.078   2.281   0.840   4.269  HG11    VAL  46  
H6L  H10  H10  H   0  1  N  N  N  -10.212  18.387  39.137   2.785  -0.822   3.882  HG12    VAL  47  
H6L  H11  H11  H   0  1  N  N  N  -10.008  17.192  37.811   3.458   0.547   2.966  HG13    VAL  48  
H6L  H29  H29  H   0  1  N  N  N  -12.475  16.053  41.184   0.307   1.351   1.154  HG21    VAL  49  
H6L  H30  H30  H   0  1  N  N  N  -11.862  17.740  41.107   0.834   2.109   2.675  HG22    VAL  50  
H6L  H31  H31  H   0  1  N  N  N  -13.105  17.182  39.937   2.011   1.816   1.373  HG23    VAL  51  
H6L  H36  H36  H   0  1  N  N  N  -10.177  15.233  42.853  -0.624  -1.797   1.638  H2      LEU  52  
H6L  H24  H24  H   0  1  N  N  N  -10.292  12.332  42.611  -1.526  -0.641  -0.899  HA      LEU  53  
H6L  H2   H2   H   0  1  N  N  N  -10.989  14.332  44.840  -0.667  -2.940  -1.459  HB2     LEU  54  
H6L  H3   H3   H   0  1  N  N  N  -10.921  12.549  45.044  -1.839  -3.617  -0.303  HB3     LEU  55  
H6L  H25  H25  H   0  1  N  N  N   -8.586  14.424  44.300  -3.677  -2.469  -1.599  HG      LEU  56  
H6L  H4   H4   H   0  1  N  N  N   -7.111  12.411  44.341  -1.441  -2.003  -3.623  HD11    LEU  57  
H6L  H5   H5   H   0  1  N  N  N   -8.560  11.369  44.543  -3.163  -1.607  -3.839  HD12    LEU  58  
H6L  H6   H6   H   0  1  N  N  N   -8.346  12.327  43.039  -2.193  -0.732  -2.629  HD13    LEU  59  
H6L  H26  H26  H   0  1  N  N  N   -9.202  14.436  46.704  -3.118  -4.856  -1.972  HD21    LEU  60  
H6L  H27  H27  H   0  1  N  N  N   -8.963  12.657  46.764  -3.629  -4.076  -3.488  HD22    LEU  61  
H6L  H28  H28  H   0  1  N  N  N   -7.571  13.739  46.422  -1.902  -4.383  -3.182  HD23    LEU  62  
H6L  H20  H20  H   0  1  N  N  N  -13.291  14.702  38.290  -4.655   4.164   1.909  H1      ELF  63  
H6L  H21  H21  H   0  1  N  N  N  -14.742  15.639  38.783  -4.027   3.764   0.291  H2      ELF  64  
H6L  H14  H14  H   0  1  N  N  N  -14.783  12.739  42.164  -5.014  -0.238   1.653  H3      ELF  65  
H6L  H18  H18  H   0  1  N  N  N  -14.149  14.202  40.551  -4.568   1.730   1.705  H4      ELF  66  
H6L  H19  H19  H   0  1  N  N  N  -15.644  13.572  39.780  -6.279   2.229   1.671  H5      ELF  67  
H6L  H15  H15  H   0  1  N  N  N  -15.593  11.323  40.306  -6.374  -0.158  -1.079  H6      ELF  68  
H6L  H16  H16  H   0  1  N  N  N  -14.027  10.442  40.290  -7.116   0.386   0.445  H7      ELF  69  
H6L  H13  H13  H   0  1  N  N  N  -14.159  10.125  43.482  -6.906  -2.017   1.464  H8      ELF  70  
H6L  H17  H17  H   0  1  N  N  N  -12.846  12.565  39.634  -4.508   1.480  -0.693  H9      ELF  71  
H6L  H22  H22  H   0  1  N  N  N  -14.879  14.826  36.484  -6.866   4.593   1.030  H10     ELF  72  
H6L  H23  H23  H   0  1  N  N  N  -16.169  14.159  37.543  -5.711   5.486   0.015  H11     ELF  73  
H6L  H1   H1   H   0  1  N  N  N  -12.238  11.116  41.997  -4.027  -0.783  -1.031  H12     ELF  74  
H6L  H35  H35  H   0  1  N  N  N  -14.844  12.396  35.962  -7.072   4.298  -1.516  H15     ELF  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H6L  O32  N31  SING  N  N   1  
H6L  N31  O33  DOUB  N  N   2  
H6L  N31  C30  SING  N  N   3  
H6L  N09  C08  SING  N  N   4  
H6L  N09  C10  SING  N  N   5  
H6L  C08  C07  SING  N  N   6  
H6L  C30  C29  DOUB  Y  N   7  
H6L  C30  C34  SING  Y  N   8  
H6L  C29  C28  SING  Y  N   9  
H6L  O11  C10  DOUB  N  N  10  
H6L  C34  C35  DOUB  Y  N  11  
H6L  C10  C05  SING  N  N  12  
H6L  C28  C27  DOUB  Y  N  13  
H6L  C07  C06  SING  N  N  14  
H6L  C24  C22  SING  N  N  15  
H6L  C35  C27  SING  Y  N  16  
H6L  C27  C26  SING  N  N  17  
H6L  N25  C26  SING  N  N  18  
H6L  N25  C21  SING  N  N  19  
H6L  C05  C06  SING  N  N  20  
H6L  C05  C04  SING  N  N  21  
H6L  C22  C21  SING  N  N  22  
H6L  C22  C23  SING  N  N  23  
H6L  C26  O36  DOUB  N  N  24  
H6L  O37  C20  DOUB  N  N  25  
H6L  C21  C20  SING  N  N  26  
H6L  C04  C03  SING  N  N  27  
H6L  C20  N19  SING  N  N  28  
H6L  C03  N12  SING  N  N  29  
H6L  C03  C02  SING  N  N  30  
H6L  N12  C13  SING  N  N  31  
H6L  N19  C14  SING  N  N  32  
H6L  C13  O38  DOUB  N  N  33  
H6L  C13  C14  SING  N  N  34  
H6L  C02  O01  DOUB  N  N  35  
H6L  C14  C15  SING  N  N  36  
H6L  C17  C16  SING  N  N  37  
H6L  C15  C16  SING  N  N  38  
H6L  C16  C18  SING  N  N  39  
H6L  N12  H1   SING  N  N  40  
H6L  C15  H2   SING  N  N  41  
H6L  C15  H3   SING  N  N  42  
H6L  C17  H4   SING  N  N  43  
H6L  C17  H5   SING  N  N  44  
H6L  C17  H6   SING  N  N  45  
H6L  C21  H7   SING  N  N  46  
H6L  C22  H8   SING  N  N  47  
H6L  C24  H9   SING  N  N  48  
H6L  C24  H10  SING  N  N  49  
H6L  C24  H11  SING  N  N  50  
H6L  C28  H12  SING  N  N  51  
H6L  C02  H13  SING  N  N  52  
H6L  C03  H14  SING  N  N  53  
H6L  C04  H15  SING  N  N  54  
H6L  C04  H16  SING  N  N  55  
H6L  C05  H17  SING  N  N  56  
H6L  C06  H18  SING  N  N  57  
H6L  C06  H19  SING  N  N  58  
H6L  C07  H20  SING  N  N  59  
H6L  C07  H21  SING  N  N  60  
H6L  C08  H22  SING  N  N  61  
H6L  C08  H23  SING  N  N  62  
H6L  C14  H24  SING  N  N  63  
H6L  C16  H25  SING  N  N  64  
H6L  C18  H26  SING  N  N  65  
H6L  C18  H27  SING  N  N  66  
H6L  C18  H28  SING  N  N  67  
H6L  C23  H29  SING  N  N  68  
H6L  C23  H30  SING  N  N  69  
H6L  C23  H31  SING  N  N  70  
H6L  C29  H32  SING  N  N  71  
H6L  C34  H33  SING  N  N  72  
H6L  C35  H34  SING  N  N  73  
H6L  N09  H35  SING  N  N  74  
H6L  N19  H36  SING  N  N  75  
H6L  N25  H37  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H6L  InChI             InChI                 1.03   "InChI=1S/C26H37N5O7/c1-15(2)12-21(25(35)28-19(14-32)13-18-6-5-11-27-23(18)33)29-26(36)22(16(3)4)30-24(34)17-7-9-20(10-8-17)31(37)38/h7-10,14-16,18-19,21-22H,5-6,11-13H2,1-4H3,(H,27,33)(H,28,35)(H,29,36)(H,30,34)/t18-,19-,21-,22-/m0/s1"  
H6L  InChIKey          InChI                 1.03   UUOJCIYWLMPKQE-LGGPRVQUSA-N  
H6L  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O"  
H6L  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)[CH](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O"  
H6L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]"  
H6L  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]"  
#
_pdbx_chem_comp_identifier.comp_id          H6L
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H6L  "Create component"  2020-11-19  PDBJ  
H6L  "Initial release"   2021-11-24  RCSB  
##
