data_JWL
# 
_chem_comp.id                                    JWL 
_chem_comp.name                                  "6-azido-N-[(2R)-1-oxidanylidene-1-[[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-3-phenyl-propan-2-yl]hexanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H27 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Beta-lactone antibacterial agent (open form)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-13 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.449 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JWL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZUL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JWL C5  C1  C 0  1 Y N N 9.604  -4.465  6.429  -0.205 3.770  1.220  C5  JWL 1  
JWL C6  C2  C 0  1 Y N N 8.974  -5.684  6.207  0.853  2.966  0.838  C6  JWL 2  
JWL N1  N1  N 0  1 N N N 9.285  -8.832  6.182  0.562  -0.721 -0.611 N1  JWL 3  
JWL C2  C3  C 0  1 Y N N 7.683  -5.374  8.184  -0.399 2.222  -1.062 C2  JWL 4  
JWL N3  N2  N 1  1 N N N 7.846  -12.326 0.143  -8.846 -0.674 0.134  N3  JWL 5  
JWL C4  C4  C 0  1 Y N N 9.273  -3.706  7.525  -1.360 3.800  0.461  C4  JWL 6  
JWL CA  C5  C 0  1 N N S 8.150  -8.780  10.894 5.374  -1.302 -0.309 CA  JWL 7  
JWL C   C6  C 0  1 N N N 8.992  -10.027 11.215 5.545  -2.360 0.750  C   JWL 8  
JWL CB  C7  C 0  1 N N R 6.870  -8.771  11.735 6.614  -0.407 -0.343 CB  JWL 9  
JWL O   O1  O 0  1 N N N 8.710  -11.068 10.724 4.763  -2.428 1.668  O   JWL 10 
JWL OB1 O2  O 0  1 N N N 6.166  -7.558  11.474 6.852  0.126  0.961  OB1 JWL 11 
JWL CB1 C8  C 0  1 N N N 7.167  -8.922  13.210 6.389  0.740  -1.330 CB1 JWL 12 
JWL N   N3  N 0  1 N N N 7.799  -8.739  9.490  4.194  -0.490 -0.002 N   JWL 13 
JWL CAO C9  C 0  1 N N N 8.718  -8.765  8.531  2.972  -0.900 -0.396 CAO JWL 14 
JWL OAR O3  O 0  1 N N N 9.926  -8.805  8.748  2.849  -1.941 -1.005 OAR JWL 15 
JWL CAP C10 C 0  1 N N R 8.173  -8.730  7.106  1.758  -0.064 -0.080 CAP JWL 16 
JWL CAS C11 C 0  1 N N N 7.319  -7.477  6.843  1.909  1.317  -0.720 CAS JWL 17 
JWL C7  C12 C 0  1 N N N 9.115  -9.123  4.893  -0.643 -0.476 -0.058 C7  JWL 18 
JWL C1  C13 C 0  1 Y N N 8.021  -6.162  7.091  0.756  2.193  -0.303 C1  JWL 19 
JWL C3  C14 C 0  1 Y N N 8.311  -4.154  8.403  -1.455 3.030  -0.683 C3  JWL 20 
JWL C8  C15 C 0  1 N N N 10.369 -9.109  4.048  -1.874 -1.151 -0.605 C8  JWL 21 
JWL C9  C16 C 0  1 N N N 10.375 -10.153 2.984  -3.099 -0.704 0.195  C9  JWL 22 
JWL C10 C17 C 0  1 N N N 9.699  -9.716  1.697  -4.349 -1.389 -0.360 C10 JWL 23 
JWL C11 C18 C 0  1 N N N 10.163 -10.487 0.469  -5.574 -0.942 0.440  C11 JWL 24 
JWL C12 C19 C 0  1 N N N 9.123  -10.513 -0.629 -6.824 -1.627 -0.115 C12 JWL 25 
JWL N2  N4  N 0  1 N N N 8.613  -11.884 -0.807 -7.997 -1.199 0.651  N2  JWL 26 
JWL N4  N5  N -1 1 N N N 7.170  -12.753 0.952  -9.694 -0.150 -0.384 N4  JWL 27 
JWL OC7 O4  O 0  1 N N N 8.001  -9.343  4.418  -0.736 0.288  0.879  OC7 JWL 28 
JWL H1  H1  H 0  1 N N N 10.356 -4.114  5.738  -0.131 4.371  2.115  H1  JWL 29 
JWL H2  H2  H 0  1 N N N 9.231  -6.266  5.334  1.755  2.943  1.431  H2  JWL 30 
JWL H3  H3  H 0  1 N N N 10.212 -8.679  6.524  0.636  -1.332 -1.361 H3  JWL 31 
JWL H4  H4  H 0  1 N N N 6.923  -5.714  8.872  -0.473 1.621  -1.956 H4  JWL 32 
JWL H5  H5  H 0  1 N N N 9.766  -2.761  7.698  -2.188 4.424  0.763  H5  JWL 33 
JWL H6  H6  H 0  1 N N N 8.741  -7.888  11.151 5.243  -1.779 -1.281 H6  JWL 34 
JWL H7  H7  H 0  1 N Y N 9.836  -9.954  11.885 6.368  -3.057 0.689  H7  JWL 35 
JWL H8  H8  H 0  1 N N N 6.252  -9.625  11.420 7.477  -0.994 -0.658 H8  JWL 36 
JWL H9  H9  H 0  1 N N N 5.368  -7.537  11.989 6.124  0.661  1.306  H9  JWL 37 
JWL H10 H10 H 0  1 N N N 6.225  -8.911  13.777 5.527  1.327  -1.015 H10 JWL 38 
JWL H11 H11 H 0  1 N N N 7.688  -9.875  13.383 7.273  1.377  -1.354 H11 JWL 39 
JWL H12 H12 H 0  1 N N N 7.805  -8.090  13.542 6.208  0.333  -2.325 H12 JWL 40 
JWL H13 H13 H 0  1 N N N 6.834  -8.690  9.234  4.292  0.343  0.485  H13 JWL 41 
JWL H14 H14 H 0  1 N N N 7.524  -9.608  6.974  1.664  0.045  1.001  H14 JWL 42 
JWL H15 H15 H 0  1 N N N 6.437  -7.522  7.498  2.845  1.769  -0.393 H15 JWL 43 
JWL H16 H16 H 0  1 N N N 6.996  -7.499  5.792  1.915  1.216  -1.805 H16 JWL 44 
JWL H17 H17 H 0  1 N N N 8.045  -3.557  9.262  -2.357 3.054  -1.276 H17 JWL 45 
JWL H18 H18 H 0  1 N N N 11.235 -9.276  4.706  -2.004 -0.878 -1.652 H18 JWL 46 
JWL H19 H19 H 0  1 N N N 10.457 -8.122  3.570  -1.762 -2.232 -0.523 H19 JWL 47 
JWL H20 H20 H 0  1 N N N 9.852  -11.042 3.367  -2.969 -0.977 1.242  H20 JWL 48 
JWL H21 H21 H 0  1 N N N 11.420 -10.412 2.757  -3.211 0.378  0.113  H21 JWL 49 
JWL H22 H22 H 0  1 N N N 9.912  -8.649  1.538  -4.479 -1.116 -1.407 H22 JWL 50 
JWL H23 H23 H 0  1 N N N 8.614  -9.860  1.808  -4.237 -2.470 -0.278 H23 JWL 51 
JWL H24 H24 H 0  1 N N N 10.387 -11.522 0.767  -5.444 -1.215 1.487  H24 JWL 52 
JWL H25 H25 H 0  1 N N N 11.075 -10.012 0.079  -5.686 0.140  0.359  H25 JWL 53 
JWL H26 H26 H 0  1 N N N 9.577  -10.168 -1.570 -6.954 -1.354 -1.162 H26 JWL 54 
JWL H27 H27 H 0  1 N N N 8.291  -9.847  -0.358 -6.712 -2.708 -0.033 H27 JWL 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JWL N2  C12 SING N N 1  
JWL N2  N3  DOUB N N 2  
JWL C12 C11 SING N N 3  
JWL N3  N4  DOUB N N 4  
JWL C11 C10 SING N N 5  
JWL C10 C9  SING N N 6  
JWL C9  C8  SING N N 7  
JWL C8  C7  SING N N 8  
JWL OC7 C7  DOUB N N 9  
JWL C7  N1  SING N N 10 
JWL N1  CAP SING N N 11 
JWL C6  C5  DOUB Y N 12 
JWL C6  C1  SING Y N 13 
JWL C5  C4  SING Y N 14 
JWL CAS C1  SING N N 15 
JWL CAS CAP SING N N 16 
JWL C1  C2  DOUB Y N 17 
JWL CAP CAO SING N N 18 
JWL C4  C3  DOUB Y N 19 
JWL C2  C3  SING Y N 20 
JWL CAO OAR DOUB N N 21 
JWL CAO N   SING N N 22 
JWL N   CA  SING N N 23 
JWL O   C   DOUB N N 24 
JWL CA  C   SING N N 25 
JWL CA  CB  SING N N 26 
JWL OB1 CB  SING N N 27 
JWL CB  CB1 SING N N 28 
JWL C5  H1  SING N N 29 
JWL C6  H2  SING N N 30 
JWL N1  H3  SING N N 31 
JWL C2  H4  SING N N 32 
JWL C4  H5  SING N N 33 
JWL CA  H6  SING N N 34 
JWL C   H7  SING N N 35 
JWL CB  H8  SING N N 36 
JWL OB1 H9  SING N N 37 
JWL CB1 H10 SING N N 38 
JWL CB1 H11 SING N N 39 
JWL CB1 H12 SING N N 40 
JWL N   H13 SING N N 41 
JWL CAP H14 SING N N 42 
JWL CAS H15 SING N N 43 
JWL CAS H16 SING N N 44 
JWL C3  H17 SING N N 45 
JWL C8  H18 SING N N 46 
JWL C8  H19 SING N N 47 
JWL C9  H20 SING N N 48 
JWL C9  H21 SING N N 49 
JWL C10 H22 SING N N 50 
JWL C10 H23 SING N N 51 
JWL C11 H24 SING N N 52 
JWL C11 H25 SING N N 53 
JWL C12 H26 SING N N 54 
JWL C12 H27 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JWL InChI            InChI                1.06  "InChI=1S/C19H27N5O4/c1-14(26)17(13-25)23-19(28)16(12-15-8-4-2-5-9-15)22-18(27)10-6-3-7-11-21-24-20/h2,4-5,8-9,13-14,16-17,26H,3,6-7,10-12H2,1H3,(H,22,27)(H,23,28)/t14-,16-,17-/m1/s1" 
JWL InChIKey         InChI                1.06  JYMVTDPABCQINZ-DJIMGWMZSA-N                                                                                                                                                             
JWL SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H](NC(=O)[C@@H](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])C=O"                                                                                                                     
JWL SMILES           CACTVS               3.385 "C[CH](O)[CH](NC(=O)[CH](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])C=O"                                                                                                                          
JWL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C=O)NC(=O)[C@@H](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])O"                                                                                                                     
JWL SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C=O)NC(=O)C(Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])O"                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           JWL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "6-azido-~{N}-[(2~{R})-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-3-phenyl-propan-2-yl]hexanamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      JWL 
_pdbx_chem_comp_synonyms.name         "Beta-lactone antibacterial agent (open form)" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JWL "Create component"  2022-05-13 PDBE 
JWL "Modify charge"     2022-06-02 PDBE 
JWL "Modify descriptor" 2022-08-22 RCSB 
JWL "Initial release"   2022-11-02 RCSB 
# 
