data_NRL
# 
_chem_comp.id                                    NRL 
_chem_comp.name                                  "N-[(3R,4R)-4-aminooxolan-3-yl]-N-[(4-amino-2-oxopyrimidin-1(2H)-yl)acetyl]glycine" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-07 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        311.294 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UID 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NRL C10  C10  C 0 1 N N N N N N 30.521 13.088 15.710 2.161  2.030  -1.416 C10  NRL 1  
NRL C14  C14  C 0 1 N N N N N N 27.253 15.891 20.113 -2.806 -0.211 -0.992 C14  NRL 2  
NRL C17  C17  C 0 1 N N N N N N 28.249 18.088 21.511 -3.615 -0.384 1.584  C17  NRL 3  
NRL C18  C18  C 0 1 N N N N N N 29.053 17.472 20.599 -2.380 -0.820 1.237  C18  NRL 4  
NRL O21  O21  O 0 1 N N N N N N 26.907 14.888 19.497 -2.431 -0.132 -2.150 O21  NRL 5  
NRL C    C02  C 0 1 N N N Y N Y 28.559 16.293 14.425 2.504  -2.398 0.103  C02  NRL 6  
NRL C03  C03  C 0 1 N N N Y N N 29.876 16.062 15.123 2.086  -1.576 -1.089 C03  NRL 7  
NRL C05  C05  C 0 1 N N R Y N N 30.803 14.297 16.638 2.590  0.845  -0.523 C05  NRL 8  
NRL CA   C06  C 0 1 N N R Y N N 32.326 14.507 16.367 2.576  1.429  0.908  C06  NRL 9  
NRL C08  C08  C 0 1 N N N N N N 32.807 13.088 16.048 2.141  2.898  0.709  C08  NRL 10 
NRL C11  C11  C 0 1 N N N N N N 29.317 16.138 17.569 0.336  -0.060 -0.331 C11  NRL 11 
NRL C12  C12  C 0 1 N N N N N N 29.453 15.623 18.989 -0.648 -1.195 -0.451 C12  NRL 12 
NRL C16  C16  C 0 1 N N N N N N 26.945 17.529 21.782 -4.457 0.147  0.585  C16  NRL 13 
NRL N04  N04  N 0 1 N N N Y N N 29.926 15.492 16.450 1.633  -0.258 -0.639 N04  NRL 14 
NRL N    N07  N 0 1 N N N Y Y N 32.997 15.068 17.544 3.918  1.366  1.502  N07  NRL 15 
NRL N13  N13  N 0 1 N N N N N N 28.620 16.330 19.927 -1.982 -0.728 -0.063 N13  NRL 16 
NRL N15  N15  N 0 1 N N N N N N 26.469 16.481 21.125 -4.024 0.221  -0.667 N15  NRL 17 
NRL N19  N19  N 0 1 N N N N N N 26.148 18.183 22.712 -5.716 0.597  0.909  N19  NRL 18 
NRL O    O01  O 0 1 N N N Y N Y 28.566 17.144 13.568 2.431  -1.930 1.215  O01  NRL 19 
NRL O09  O09  O 0 1 N N N N N N 31.749 12.410 15.499 1.415  2.902  -0.539 O09  NRL 20 
NRL O22  O22  O 0 1 N N N N N N 28.609 17.121 17.421 -0.039 1.031  0.041  O22  NRL 21 
NRL H101 H101 H 0 0 N N N N N N 30.117 13.440 14.749 3.037  2.546  -1.809 H101 NRL 22 
NRL H102 H102 H 0 0 N N N N N N 29.796 12.411 16.186 1.530  1.680  -2.233 H102 NRL 23 
NRL H171 H171 H 0 0 N N N N N N 28.581 18.979 22.023 -3.949 -0.444 2.609  H171 NRL 24 
NRL H181 H181 H 0 0 N N N N N N 30.035 17.873 20.395 -1.717 -1.231 1.984  H181 NRL 25 
NRL HXT  H1   H 0 1 N Y N Y N Y 27.068 15.245 14.057 3.214  -4.137 0.725  H1   NRL 26 
NRL H032 H032 H 0 0 N N N Y N N 30.461 15.394 14.474 2.934  -1.458 -1.764 H032 NRL 27 
NRL H031 H031 H 0 0 N N N Y N N 30.373 17.041 15.185 1.273  -2.081 -1.611 H031 NRL 28 
NRL H051 H051 H 0 0 N N N Y N N 30.697 13.951 17.677 3.592  0.510  -0.789 H051 NRL 29 
NRL HA   H061 H 0 0 N N N Y N N 32.460 15.157 15.490 1.858  0.897  1.531  H061 NRL 30 
NRL H082 H082 H 0 0 N N N N N N 33.137 12.587 16.970 1.493  3.215  1.526  H082 NRL 31 
NRL H081 H081 H 0 0 N N N N N N 33.641 13.126 15.332 3.014  3.547  0.645  H081 NRL 32 
NRL H122 H122 H 0 0 N N N N N N 29.173 14.559 19.004 -0.673 -1.548 -1.482 H122 NRL 33 
NRL H121 H121 H 0 0 N N N N N N 30.502 15.731 19.302 -0.344 -2.010 0.205  H121 NRL 34 
NRL H    H071 H 0 0 N N N Y Y N 32.654 15.992 17.715 3.918  1.746  2.437  H071 NRL 35 
NRL H2   H2   H 0 1 N Y N Y Y N 32.812 14.491 18.340 4.273  0.421  1.496  H2   NRL 36 
NRL H192 H192 H 0 0 N N N N N N 25.216 17.863 22.885 -6.027 0.548  1.827  H192 NRL 37 
NRL H191 H191 H 0 0 N N N N N N 26.505 18.974 23.209 -6.293 0.962  0.220  H191 NRL 38 
NRL OXT  O02  O 0 1 N Y N Y N Y 27.770 15.280 14.696 2.958  -3.649 -0.070 O02  NRL 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NRL O   C    DOUB N N 1  
NRL C   C03  SING N N 2  
NRL C03 N04  SING N N 3  
NRL O09 C10  SING N N 4  
NRL O09 C08  SING N N 5  
NRL C10 C05  SING N N 6  
NRL C08 CA   SING N N 7  
NRL CA  C05  SING N N 8  
NRL CA  N    SING N N 9  
NRL N04 C05  SING N N 10 
NRL N04 C11  SING N N 11 
NRL O22 C11  DOUB N N 12 
NRL C11 C12  SING N N 13 
NRL C12 N13  SING N N 14 
NRL O21 C14  DOUB N N 15 
NRL N13 C14  SING N N 16 
NRL N13 C18  SING N N 17 
NRL C14 N15  SING N N 18 
NRL C18 C17  DOUB N N 19 
NRL N15 C16  DOUB N N 20 
NRL C17 C16  SING N N 21 
NRL C16 N19  SING N N 22 
NRL C10 H101 SING N N 23 
NRL C10 H102 SING N N 24 
NRL C17 H171 SING N N 25 
NRL C18 H181 SING N N 26 
NRL C03 H032 SING N N 27 
NRL C03 H031 SING N N 28 
NRL C05 H051 SING N N 29 
NRL CA  HA   SING N N 30 
NRL C08 H082 SING N N 31 
NRL C08 H081 SING N N 32 
NRL C12 H122 SING N N 33 
NRL C12 H121 SING N N 34 
NRL N   H    SING N N 35 
NRL N   H2   SING N N 36 
NRL N19 H192 SING N N 37 
NRL N19 H191 SING N N 38 
NRL C   OXT  SING N N 39 
NRL OXT HXT  SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NRL SMILES           ACDLabs              12.01 "OC(=O)CN(C1COCC1N)C(=O)CN1C=CC(N)=NC1=O"                                                                                                   
NRL InChI            InChI                1.03  "InChI=1S/C12H17N5O5/c13-7-5-22-6-8(7)17(4-11(19)20)10(18)3-16-2-1-9(14)15-12(16)21/h1-2,7-8H,3-6,13H2,(H,19,20)(H2,14,15,21)/t7-,8-/m0/s1" 
NRL InChIKey         InChI                1.03  SSCQFEZTHMEZLU-YUMQZZPRSA-N                                                                                                                 
NRL SMILES_CANONICAL CACTVS               3.385 "N[C@H]1COC[C@@H]1N(CC(O)=O)C(=O)CN2C=CC(=NC2=O)N"                                                                                          
NRL SMILES           CACTVS               3.385 "N[CH]1COC[CH]1N(CC(O)=O)C(=O)CN2C=CC(=NC2=O)N"                                                                                             
NRL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H](CO1)N(CC(=O)O)C(=O)CN2C=CC(=NC2=O)N)N"                                                                                      
NRL SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(CO1)N(CC(=O)O)C(=O)CN2C=CC(=NC2=O)N)N"                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NRL "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(3R,4R)-4-aminooxolan-3-yl]-N-[(4-amino-2-oxopyrimidin-1(2H)-yl)acetyl]glycine"                             
NRL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)ethanoyl-[(3~{R},4~{R})-4-azanyloxolan-3-yl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NRL "Create component"     2022-04-07 RCSB 
NRL "Modify internal type" 2022-08-15 RCSB 
NRL "Initial release"      2023-04-05 RCSB 
NRL "Modify backbone"      2023-11-03 PDBE 
# 
