data_VKL
# 
_chem_comp.id                                    VKL 
_chem_comp.name                                  "3-[3,4-bis(fluoranyl)phenyl]-5-methyl-1$l^{4},4,5$l^{4},7-tetrazabicyclo[4.3.0]nona-1(6),2,4-triene" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H12 F2 N4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2023-03-09 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.247 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VKL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6S9Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VKL C   C1  C 0 1 N N N 34.792 -7.050 -4.464 2.707  2.701  0.023  C   VKL 1  
VKL C4  C2  C 0 1 Y N N 37.960 -5.847 -3.366 0.365  -0.043 0.037  C4  VKL 2  
VKL C5  C3  C 0 1 Y N N 35.745 -4.814 -4.573 3.009  0.306  0.062  C5  VKL 3  
VKL C6  C4  C 0 1 N N N 35.031 -2.833 -5.273 4.860  -1.019 -0.319 C6  VKL 4  
VKL N1  N1  N 1 1 Y N N 35.834 -6.113 -4.184 2.164  1.341  0.036  N1  VKL 5  
VKL C7  C5  C 0 1 N N N 36.516 -2.694 -4.949 3.651  -1.892 0.090  C7  VKL 6  
VKL C8  C6  C 0 1 Y N N 38.078 -4.448 -3.907 1.227  -1.143 0.062  C8  VKL 7  
VKL N2  N2  N 0 1 N N N 34.743 -4.269 -5.164 4.400  0.329  0.085  N2  VKL 8  
VKL C11 C7  C 0 1 Y N N 38.958 -7.410 -1.699 -1.954 0.871  -0.007 C11 VKL 9  
VKL C10 C8  C 0 1 Y N N 40.073 -7.972 -1.117 -3.323 0.687  -0.024 C10 VKL 10 
VKL N3  N3  N 1 1 Y N N 36.749 -3.978 -4.274 2.533  -0.932 0.072  N3  VKL 11 
VKL N   N4  N 0 1 Y N N 36.942 -6.619 -3.517 0.890  1.179  0.023  N   VKL 12 
VKL C9  C9  C 0 1 Y N N 41.330 -7.562 -1.457 -3.853 -0.595 -0.015 C9  VKL 13 
VKL C1  C10 C 0 1 Y N N 41.520 -6.559 -2.370 -3.012 -1.696 0.010  C1  VKL 14 
VKL C2  C11 C 0 1 Y N N 40.414 -5.975 -2.960 -1.643 -1.521 0.027  C2  VKL 15 
VKL C3  C12 C 0 1 Y N N 39.131 -6.402 -2.649 -1.106 -0.235 0.019  C3  VKL 16 
VKL F   F1  F 0 1 N N N 42.396 -8.167 -0.890 -5.192 -0.772 -0.032 F   VKL 17 
VKL F1  F2  F 0 1 N N N 39.945 -8.937 -0.182 -4.148 1.757  -0.048 F1  VKL 18 
VKL H1  H1  H 0 1 N N N 35.077 -8.041 -4.081 2.854  3.024  -1.008 H1  VKL 19 
VKL H3  H2  H 0 1 N N N 33.863 -6.721 -3.976 2.008  3.376  0.518  H3  VKL 20 
VKL H2  H3  H 0 1 N N N 34.634 -7.109 -5.551 3.661  2.717  0.548  H2  VKL 21 
VKL H4  H4  H 0 1 N N N 34.425 -2.263 -4.554 5.755  -1.308 0.231  H4  VKL 22 
VKL H5  H5  H 0 1 N N N 34.824 -2.475 -6.292 5.031  -1.068 -1.394 H5  VKL 23 
VKL H6  H6  H 0 1 N N N 37.125 -2.595 -5.859 3.488  -2.689 -0.635 H6  VKL 24 
VKL H7  H7  H 0 1 N N N 36.711 -1.841 -4.283 3.792  -2.302 1.091  H7  VKL 25 
VKL H8  H8  H 0 1 N N N 38.995 -3.886 -4.007 0.833  -2.149 0.075  H8  VKL 26 
VKL H9  H9  H 0 1 N N N 33.920 -4.735 -5.489 4.761  1.036  -0.537 H9  VKL 27 
VKL H10 H10 H 0 1 N N N 37.968 -7.743 -1.425 -1.542 1.869  -0.018 H10 VKL 28 
VKL H15 H15 H 0 1 N N N 40.551 -5.175 -3.673 -0.989 -2.380 0.047  H15 VKL 29 
VKL H11 H11 H 0 1 N N N 42.517 -6.230 -2.625 -3.428 -2.692 0.017  H11 VKL 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VKL C   N1  SING N N 1  
VKL C4  C8  DOUB Y N 2  
VKL C4  N   SING Y N 3  
VKL C4  C3  SING N N 4  
VKL C5  N1  SING Y N 5  
VKL C5  N2  SING N N 6  
VKL C5  N3  DOUB Y N 7  
VKL C6  C7  SING N N 8  
VKL C6  N2  SING N N 9  
VKL N1  N   DOUB Y N 10 
VKL C7  N3  SING N N 11 
VKL C8  N3  SING Y N 12 
VKL C11 C10 SING Y N 13 
VKL C11 C3  DOUB Y N 14 
VKL C10 F1  SING N N 15 
VKL C9  F   SING N N 16 
VKL C2  C3  SING Y N 17 
VKL C   H1  SING N N 18 
VKL C   H3  SING N N 19 
VKL C   H2  SING N N 20 
VKL C6  H4  SING N N 21 
VKL C6  H5  SING N N 22 
VKL C7  H6  SING N N 23 
VKL C7  H7  SING N N 24 
VKL C8  H8  SING N N 25 
VKL N2  H9  SING N N 26 
VKL C11 H10 SING N N 27 
VKL C2  H15 SING N N 28 
VKL C9  C10 DOUB Y N 29 
VKL C1  C2  DOUB Y N 30 
VKL C1  C9  SING Y N 31 
VKL C1  H11 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VKL InChI            InChI                1.06  "InChI=1S/C12H11F2N4/c1-17-12-15-4-5-18(12)7-11(16-17)8-2-3-9(13)10(14)6-8/h2-3,6-7H,4-5H2,1H3/q+1/p+1" 
VKL InChIKey         InChI                1.06  LPONEBABNALWCF-UHFFFAOYSA-O                                                                             
VKL SMILES_CANONICAL CACTVS               3.385 "C[n+]1nc(c[n+]2CCNc12)c3ccc(F)c(F)c3"                                                                  
VKL SMILES           CACTVS               3.385 "C[n+]1nc(c[n+]2CCNc12)c3ccc(F)c(F)c3"                                                                  
VKL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1c2[n+](cc(n1)c3ccc(c(c3)F)F)CCN2"                                                                
VKL SMILES           "OpenEye OEToolkits" 2.0.7 "C[n+]1c2[n+](cc(n1)c3ccc(c(c3)F)F)CCN2"                                                                
# 
_pdbx_chem_comp_identifier.comp_id           VKL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[3,4-bis(fluoranyl)phenyl]-1-methyl-7,8-dihydro-6~{H}-imidazo[2,1-c][1,2,4]triazine-1,5-diium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VKL "Create component" 2023-03-09 PDBE 
VKL "Initial release"  2023-05-24 RCSB 
# 
