data_X1L
# 
_chem_comp.id                                    X1L 
_chem_comp.name                                  "N-[(1S)-1-cyclopropyl-3-(methanesulfonyl)propyl]-2-(1,1-difluoroethyl)-4-phenoxypyrimidine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 F2 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-19 
_chem_comp.pdbx_modified_date                    2024-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.476 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X1L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GQU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X1L N1  N1  N 0 1 N N N N N N 19.751 21.333 14.623 -1.810 -0.412 0.776  N1  X1L 1  
X1L C7  C1  C 0 1 N N N N N N 21.052 23.380 14.211 -4.240 -0.605 0.581  C7  X1L 2  
X1L C8  C2  C 0 1 N N N N N N 21.423 23.515 15.649 -4.265 0.106  -0.774 C8  X1L 3  
X1L N2  N2  N 0 1 Y N N N N N 16.427 19.692 16.859 2.822  0.670  0.135  N2  X1L 4  
X1L C9  C3  C 0 1 N N N N N N 23.500 22.487 17.202 -5.640 1.757  -2.597 C9  X1L 5  
X1L O1  O1  O 0 1 N N N N N N 23.635 24.838 16.090 -6.891 0.066  -1.007 O1  X1L 6  
X1L C1  C4  C 0 1 N N N N N N 15.578 17.866 18.203 3.722  2.888  0.579  C1  X1L 7  
X1L C5  C5  C 0 1 N N N N N N 19.826 20.092 15.127 -0.573 -0.803 0.412  C5  X1L 8  
X1L C6  C6  C 0 1 N N S N N N 20.827 21.910 13.832 -2.922 -1.365 0.734  C6  X1L 9  
X1L C4  C7  C 0 1 Y N N N N N 18.654 19.587 15.915 0.547  0.157  0.455  C4  X1L 10 
X1L C3  C8  C 0 1 Y N N N N N 18.786 18.347 16.547 0.347  1.477  0.870  C3  X1L 11 
X1L O3  O2  O 0 1 N N N N N N 17.231 21.392 15.508 2.099  -1.494 -0.332 O3  X1L 12 
X1L C2  C9  C 0 1 Y N N N N N 16.714 18.515 17.395 2.583  1.903  0.534  C2  X1L 13 
X1L N   N3  N 0 1 Y N N N N N 17.825 17.798 17.294 1.379  2.303  0.894  N   X1L 14 
X1L C   C10 C 0 1 N N N N N N 14.735 18.858 18.919 3.206  4.242  1.069  C   X1L 15 
X1L O   O3  O 0 1 N N N N N N 20.813 19.385 14.960 -0.379 -1.947 0.048  O   X1L 16 
X1L C10 C11 C 0 1 N N N N N N 20.500 21.870 12.332 -2.948 -2.176 2.031  C10 X1L 17 
X1L C11 C12 C 0 1 N N N N N N 20.869 20.619 11.599 -1.712 -3.012 2.367  C11 X1L 18 
X1L C12 C13 C 0 1 N N N N N N 21.642 21.874 11.364 -3.000 -3.700 1.911  C12 X1L 19 
X1L C13 C14 C 0 1 Y N N N N N 17.409 20.198 16.127 1.847  -0.229 0.079  C13 X1L 20 
X1L C14 C15 C 0 1 Y N N N N N 15.940 21.887 15.290 3.350  -1.783 -0.777 C14 X1L 21 
X1L C15 C16 C 0 1 Y N N N N N 15.683 23.205 15.631 4.386  -1.961 0.128  C15 X1L 22 
X1L C16 C17 C 0 1 Y N N N N N 14.434 23.746 15.371 5.657  -2.256 -0.327 C16 X1L 23 
X1L C17 C18 C 0 1 Y N N N N N 13.450 22.979 14.780 5.897  -2.371 -1.684 C17 X1L 24 
X1L C18 C19 C 0 1 Y N N N N N 13.708 21.662 14.455 4.866  -2.194 -2.588 C18 X1L 25 
X1L C19 C20 C 0 1 Y N N N N N 14.951 21.105 14.705 3.592  -1.905 -2.138 C19 X1L 26 
X1L F   F1  F 0 1 N N N N N N 16.080 16.971 19.067 4.708  2.420  1.455  F   X1L 27 
X1L F1  F2  F 0 1 N N N N N N 14.813 17.098 17.393 4.266  3.031  -0.701 F1  X1L 28 
X1L O2  O4  O 0 1 N N N N N N 23.744 22.856 14.637 -5.867 2.046  0.014  O2  X1L 29 
X1L S1  S1  S 0 1 N N N N N N 23.194 23.498 15.803 -5.828 1.008  -0.956 S1  X1L 30 
X1L H5  H1  H 0 1 N N N N N N 18.931 21.878 14.796 -1.964 0.499  1.071  H5  X1L 31 
X1L H6  H2  H 0 1 N N N N N N 21.863 23.790 13.591 -4.330 0.132  1.379  H6  X1L 32 
X1L H7  H3  H 0 1 N N N N N N 20.126 23.944 14.025 -5.073 -1.306 0.638  H7  X1L 33 
X1L H8  H4  H 0 1 N N N N N N 21.029 24.464 16.043 -3.432 0.807  -0.831 H8  X1L 34 
X1L H9  H5  H 0 1 N N N N N N 20.997 22.676 16.219 -4.175 -0.630 -1.572 H9  X1L 35 
X1L H11 H6  H 0 1 N N N N N N 24.584 22.418 17.375 -5.510 0.972  -3.342 H11 X1L 36 
X1L H12 H7  H 0 1 N N N N N N 23.015 22.927 18.086 -6.530 2.340  -2.835 H12 X1L 37 
X1L H10 H8  H 0 1 N N N N N N 23.093 21.481 17.023 -4.767 2.410  -2.601 H10 X1L 38 
X1L H   H9  H 0 1 N N N N N N 21.759 21.353 14.006 -2.791 -2.039 -0.113 H   X1L 39 
X1L H4  H10 H 0 1 N N N N N N 19.712 17.806 16.425 -0.634 1.816  1.167  H4  X1L 40 
X1L H1  H11 H 0 1 N N N N N N 14.331 19.584 18.199 2.782  4.131  2.067  H1  X1L 41 
X1L H2  H12 H 0 1 N N N N N N 13.905 18.339 19.421 4.030  4.955  1.102  H2  X1L 42 
X1L H3  H13 H 0 1 N N N N N N 15.345 19.385 19.668 2.438  4.607  0.387  H3  X1L 43 
X1L H13 H14 H 0 1 N N N N N N 19.577 22.380 12.020 -3.487 -1.718 2.861  H13 X1L 44 
X1L H14 H15 H 0 1 N N N N N N 21.333 19.781 12.140 -0.879 -2.984 1.664  H14 X1L 45 
X1L H15 H16 H 0 1 N N N N N N 20.206 20.226 10.814 -1.437 -3.104 3.418  H15 X1L 46 
X1L H16 H17 H 0 1 N N N N N N 22.675 21.961 11.732 -3.572 -4.246 2.661  H16 X1L 47 
X1L H17 H18 H 0 1 N N N N N N 21.549 22.406 10.406 -3.014 -4.126 0.907  H17 X1L 48 
X1L H18 H19 H 0 1 N N N N N N 16.450 23.806 16.096 4.200  -1.870 1.188  H18 X1L 49 
X1L H19 H20 H 0 1 N N N N N N 14.229 24.774 15.632 6.464  -2.395 0.377  H19 X1L 50 
X1L H20 H21 H 0 1 N N N N N N 12.481 23.408 14.572 6.891  -2.601 -2.038 H20 X1L 51 
X1L H21 H22 H 0 1 N N N N N N 12.934 21.061 14.002 5.056  -2.284 -3.648 H21 X1L 52 
X1L H22 H23 H 0 1 N N N N N N 15.150 20.075 14.448 2.788  -1.766 -2.845 H22 X1L 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X1L C   C1  SING N N 1  
X1L F   C1  SING N N 2  
X1L F1  C1  SING N N 3  
X1L C1  C2  SING N N 4  
X1L C2  N   DOUB Y N 5  
X1L N   C3  SING Y N 6  
X1L C3  C4  DOUB Y N 7  
X1L C4  C5  SING N N 8  
X1L O   C5  DOUB N N 9  
X1L C5  N1  SING N N 10 
X1L N1  C6  SING N N 11 
X1L C6  C7  SING N N 12 
X1L C7  C8  SING N N 13 
X1L C8  S1  SING N N 14 
X1L O1  S1  DOUB N N 15 
X1L S1  O2  DOUB N N 16 
X1L C9  S1  SING N N 17 
X1L C10 C6  SING N N 18 
X1L C10 C11 SING N N 19 
X1L C11 C12 SING N N 20 
X1L C12 C10 SING N N 21 
X1L C13 C4  SING Y N 22 
X1L O3  C13 SING N N 23 
X1L C14 O3  SING N N 24 
X1L C14 C15 DOUB Y N 25 
X1L C15 C16 SING Y N 26 
X1L C16 C17 DOUB Y N 27 
X1L C17 C18 SING Y N 28 
X1L C18 C19 DOUB Y N 29 
X1L C19 C14 SING Y N 30 
X1L N2  C13 DOUB Y N 31 
X1L C2  N2  SING Y N 32 
X1L N1  H5  SING N N 33 
X1L C7  H6  SING N N 34 
X1L C7  H7  SING N N 35 
X1L C8  H8  SING N N 36 
X1L C8  H9  SING N N 37 
X1L C9  H11 SING N N 38 
X1L C9  H12 SING N N 39 
X1L C9  H10 SING N N 40 
X1L C6  H   SING N N 41 
X1L C3  H4  SING N N 42 
X1L C   H1  SING N N 43 
X1L C   H2  SING N N 44 
X1L C   H3  SING N N 45 
X1L C10 H13 SING N N 46 
X1L C11 H14 SING N N 47 
X1L C11 H15 SING N N 48 
X1L C12 H16 SING N N 49 
X1L C12 H17 SING N N 50 
X1L C15 H18 SING N N 51 
X1L C16 H19 SING N N 52 
X1L C17 H20 SING N N 53 
X1L C18 H21 SING N N 54 
X1L C19 H22 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X1L SMILES           ACDLabs              12.01 "FC(C)(F)c1nc(Oc2ccccc2)c(cn1)C(=O)NC(CCS(C)(=O)=O)C1CC1"                                                                                                 
X1L InChI            InChI                1.06  "InChI=1S/C20H23F2N3O4S/c1-20(21,22)19-23-12-15(18(25-19)29-14-6-4-3-5-7-14)17(26)24-16(13-8-9-13)10-11-30(2,27)28/h3-7,12-13,16H,8-11H2,1-2H3,(H,24,26)" 
X1L InChIKey         InChI                1.06  DBNMEVJJGIPVCE-UHFFFAOYSA-N                                                                                                                               
X1L SMILES_CANONICAL CACTVS               3.385 "CC(F)(F)c1ncc(C(=O)N[C@@H](CC[S](C)(=O)=O)C2CC2)c(Oc3ccccc3)n1"                                                                                          
X1L SMILES           CACTVS               3.385 "CC(F)(F)c1ncc(C(=O)N[CH](CC[S](C)(=O)=O)C2CC2)c(Oc3ccccc3)n1"                                                                                            
X1L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(c1ncc(c(n1)Oc2ccccc2)C(=O)N[C@H](CCS(=O)(=O)C)C3CC3)(F)F"                                                                                             
X1L SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ncc(c(n1)Oc2ccccc2)C(=O)NC(CCS(=O)(=O)C)C3CC3)(F)F"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X1L "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1S)-1-cyclopropyl-3-(methanesulfonyl)propyl]-2-(1,1-difluoroethyl)-4-phenoxypyrimidine-5-carboxamide"            
X1L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1,1-bis(fluoranyl)ethyl]-~{N}-[(1~{R})-1-cyclopropyl-3-methylsulfonyl-propyl]-4-phenoxy-pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X1L "Create component" 2023-10-19 RCSB 
X1L "Initial release"  2024-05-01 RCSB 
# 
